data_3ZT1 # _model_server_result.job_id gD2RN005tfNNH0URirTJHQ _model_server_result.datetime_utc '2024-11-08 07:05:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3zt1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":1216}' # _entry.id 3ZT1 # _exptl.entry_id 3ZT1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 449.476 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4-CARBOXY-1,3-BENZODIOXOL-5-YL)METHYL-[[2-[(4-METHOXYPHENYL)METHYLCARBAMOYL]PHENYL]METHYL]AZANIUM _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3ZT1 _cell.length_a 70.586 _cell.length_b 70.586 _cell.length_c 66.673 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3ZT1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 H N N ? 4 O N N # _chem_comp.formula 'C25 H25 N2 O6 1' _chem_comp.formula_weight 449.476 _chem_comp.id OM1 _chem_comp.mon_nstd_flag . _chem_comp.name (4-CARBOXY-1,3-BENZODIOXOL-5-YL)METHYL-[[2-[(4-METHOXYPHENYL)METHYLCARBAMOYL]PHENYL]METHYL]AZANIUM _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C15 C16 OM1 sing 252 n y C15 C14 OM1 doub 253 n y C16 C17 OM1 doub 254 n y C14 C13 OM1 sing 255 n y C17 C18 OM1 sing 256 n y C23 C24 OM1 sing 257 n y C23 C22 OM1 doub 258 n y C6 C7 OM1 sing 259 n y C6 C5 OM1 doub 260 n y C10 C9 OM1 doub 261 n y C10 C5 OM1 sing 262 n y C24 C25 OM1 doub 263 n y C7 C8 OM1 doub 264 n y C9 C8 OM1 sing 265 n y C13 C18 OM1 doub 266 n y C13 C2 OM1 sing 267 n n C30 C22 OM1 sing 268 n y C30 C29 OM1 doub 269 n y C30 C31 OM1 sing 270 n n C5 C4 OM1 sing 271 n n C18 C19 OM1 sing 272 n n C22 C21 OM1 sing 273 n n C25 C29 OM1 sing 274 n y C25 O26 OM1 sing 275 n n C29 O28 OM1 sing 276 n n C8 O11 OM1 sing 277 n n C2 N3 OM1 sing 278 n n C2 O1 OM1 doub 279 n n C31 O33 OM1 sing 280 n n C31 O32 OM1 doub 281 n n C27 O26 OM1 sing 282 n n C27 O28 OM1 sing 283 n n C12 O11 OM1 sing 284 n n C4 N3 OM1 sing 285 n n C19 N20 OM1 sing 286 n n C21 N20 OM1 sing 287 n n C15 H15 OM1 sing 288 n n C16 H16 OM1 sing 289 n n C14 H14 OM1 sing 290 n n C17 H17 OM1 sing 291 n n C23 H23 OM1 sing 292 n n C24 H24 OM1 sing 293 n n C6 H6 OM1 sing 294 n n C7 H7 OM1 sing 295 n n C10 H10 OM1 sing 296 n n C9 H9 OM1 sing 297 n n C4 H41C OM1 sing 298 n n C4 H42C OM1 sing 299 n n C19 H191 OM1 sing 300 n n C19 H192 OM1 sing 301 n n C21 H211 OM1 sing 302 n n C21 H212 OM1 sing 303 n n N3 H3 OM1 sing 304 n n O33 H33 OM1 sing 305 n n C27 H271 OM1 sing 306 n n C27 H272 OM1 sing 307 n n C12 H121 OM1 sing 308 n n C12 H122 OM1 sing 309 n n C12 H123 OM1 sing 310 n n N20 H20 OM1 sing 311 n n N20 H220 OM1 sing 312 n n # _atom_sites.entry_id 3ZT1 _atom_sites.fract_transf_matrix[1][1] 0.014167 _atom_sites.fract_transf_matrix[1][2] 0.008179 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016359 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014999 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 1210 1210 SO4 SO4 . D 2 SO4 A 1 1211 1211 SO4 SO4 . E 2 SO4 A 1 1212 1212 SO4 SO4 . F 2 SO4 A 1 1213 1213 SO4 SO4 . G 3 EDO A 1 1214 1214 EDO EDO . H 4 OM1 A 1 1215 1215 OM1 OM1 . I 2 SO4 B 1 1210 1210 SO4 SO4 . J 2 SO4 B 1 1211 1211 SO4 SO4 . K 2 SO4 B 1 1212 1212 SO4 SO4 . L 5 ACT B 1 1213 1213 ACT ACT . M 3 EDO B 1 1214 1214 EDO EDO . N 3 EDO B 1 1215 1215 EDO EDO . O 4 OM1 B 1 1216 1216 OM1 OM1 . P 6 HOH A 1 2001 2001 HOH HOH . P 6 HOH A 2 2002 2002 HOH HOH . P 6 HOH A 3 2003 2003 HOH HOH . P 6 HOH A 4 2004 2004 HOH HOH . P 6 HOH A 5 2005 2005 HOH HOH . P 6 HOH A 6 2006 2006 HOH HOH . P 6 HOH A 7 2007 2007 HOH HOH . P 6 HOH A 8 2008 2008 HOH HOH . P 6 HOH A 9 2009 2009 HOH HOH . P 6 HOH A 10 2010 2010 HOH HOH . P 6 HOH A 11 2011 2011 HOH HOH . P 6 HOH A 12 2012 2012 HOH HOH . P 6 HOH A 13 2013 2013 HOH HOH . P 6 HOH A 14 2014 2014 HOH HOH . P 6 HOH A 15 2015 2015 HOH HOH . P 6 HOH A 16 2016 2016 HOH HOH . P 6 HOH A 17 2017 2017 HOH HOH . P 6 HOH A 18 2018 2018 HOH HOH . P 6 HOH A 19 2019 2019 HOH HOH . P 6 HOH A 20 2020 2020 HOH HOH . P 6 HOH A 21 2021 2021 HOH HOH . P 6 HOH A 22 2022 2022 HOH HOH . P 6 HOH A 23 2023 2023 HOH HOH . P 6 HOH A 24 2024 2024 HOH HOH . P 6 HOH A 25 2025 2025 HOH HOH . P 6 HOH A 26 2026 2026 HOH HOH . P 6 HOH A 27 2027 2027 HOH HOH . P 6 HOH A 28 2028 2028 HOH HOH . P 6 HOH A 29 2029 2029 HOH HOH . P 6 HOH A 30 2030 2030 HOH HOH . P 6 HOH A 31 2031 2031 HOH HOH . P 6 HOH A 32 2032 2032 HOH HOH . P 6 HOH A 33 2033 2033 HOH HOH . P 6 HOH A 34 2034 2034 HOH HOH . P 6 HOH A 35 2035 2035 HOH HOH . P 6 HOH A 36 2036 2036 HOH HOH . P 6 HOH A 37 2037 2037 HOH HOH . P 6 HOH A 38 2038 2038 HOH HOH . P 6 HOH A 39 2039 2039 HOH HOH . P 6 HOH A 40 2040 2040 HOH HOH . P 6 HOH A 41 2041 2041 HOH HOH . P 6 HOH A 42 2042 2042 HOH HOH . P 6 HOH A 43 2043 2043 HOH HOH . P 6 HOH A 44 2044 2044 HOH HOH . P 6 HOH A 45 2045 2045 HOH HOH . P 6 HOH A 46 2046 2046 HOH HOH . P 6 HOH A 47 2047 2047 HOH HOH . P 6 HOH A 48 2048 2048 HOH HOH . P 6 HOH A 49 2049 2049 HOH HOH . P 6 HOH A 50 2050 2050 HOH HOH . P 6 HOH A 51 2051 2051 HOH HOH . P 6 HOH A 52 2052 2052 HOH HOH . P 6 HOH A 53 2053 2053 HOH HOH . P 6 HOH A 54 2054 2054 HOH HOH . P 6 HOH A 55 2055 2055 HOH HOH . P 6 HOH A 56 2056 2056 HOH HOH . P 6 HOH A 57 2057 2057 HOH HOH . P 6 HOH A 58 2058 2058 HOH HOH . P 6 HOH A 59 2059 2059 HOH HOH . P 6 HOH A 60 2060 2060 HOH HOH . P 6 HOH A 61 2061 2061 HOH HOH . P 6 HOH A 62 2062 2062 HOH HOH . P 6 HOH A 63 2063 2063 HOH HOH . P 6 HOH A 64 2064 2064 HOH HOH . P 6 HOH A 65 2065 2065 HOH HOH . P 6 HOH A 66 2066 2066 HOH HOH . P 6 HOH A 67 2067 2067 HOH HOH . P 6 HOH A 68 2068 2068 HOH HOH . P 6 HOH A 69 2069 2069 HOH HOH . Q 6 HOH B 1 2001 2001 HOH HOH . Q 6 HOH B 2 2002 2002 HOH HOH . Q 6 HOH B 3 2003 2003 HOH HOH . Q 6 HOH B 4 2004 2004 HOH HOH . Q 6 HOH B 5 2005 2005 HOH HOH . Q 6 HOH B 6 2006 2006 HOH HOH . Q 6 HOH B 7 2007 2007 HOH HOH . Q 6 HOH B 8 2008 2008 HOH HOH . Q 6 HOH B 9 2009 2009 HOH HOH . Q 6 HOH B 10 2010 2010 HOH HOH . Q 6 HOH B 11 2011 2011 HOH HOH . Q 6 HOH B 12 2012 2012 HOH HOH . Q 6 HOH B 13 2013 2013 HOH HOH . Q 6 HOH B 14 2014 2014 HOH HOH . Q 6 HOH B 15 2015 2015 HOH HOH . Q 6 HOH B 16 2016 2016 HOH HOH . Q 6 HOH B 17 2017 2017 HOH HOH . Q 6 HOH B 18 2018 2018 HOH HOH . Q 6 HOH B 19 2019 2019 HOH HOH . Q 6 HOH B 20 2020 2020 HOH HOH . Q 6 HOH B 21 2021 2021 HOH HOH . Q 6 HOH B 22 2022 2022 HOH HOH . Q 6 HOH B 23 2023 2023 HOH HOH . Q 6 HOH B 24 2024 2024 HOH HOH . Q 6 HOH B 25 2025 2025 HOH HOH . Q 6 HOH B 26 2026 2026 HOH HOH . Q 6 HOH B 27 2027 2027 HOH HOH . Q 6 HOH B 28 2028 2028 HOH HOH . Q 6 HOH B 29 2029 2029 HOH HOH . Q 6 HOH B 30 2030 2030 HOH HOH . Q 6 HOH B 31 2031 2031 HOH HOH . Q 6 HOH B 32 2032 2032 HOH HOH . Q 6 HOH B 33 2033 2033 HOH HOH . Q 6 HOH B 34 2034 2034 HOH HOH . Q 6 HOH B 35 2035 2035 HOH HOH . Q 6 HOH B 36 2036 2036 HOH HOH . Q 6 HOH B 37 2037 2037 HOH HOH . Q 6 HOH B 38 2038 2038 HOH HOH . Q 6 HOH B 39 2039 2039 HOH HOH . Q 6 HOH B 40 2040 2040 HOH HOH . Q 6 HOH B 41 2041 2041 HOH HOH . Q 6 HOH B 42 2042 2042 HOH HOH . Q 6 HOH B 43 2043 2043 HOH HOH . Q 6 HOH B 44 2044 2044 HOH HOH . Q 6 HOH B 45 2045 2045 HOH HOH . Q 6 HOH B 46 2046 2046 HOH HOH . Q 6 HOH B 47 2047 2047 HOH HOH . Q 6 HOH B 48 2048 2048 HOH HOH . Q 6 HOH B 49 2049 2049 HOH HOH . Q 6 HOH B 50 2050 2050 HOH HOH . Q 6 HOH B 51 2051 2051 HOH HOH . Q 6 HOH B 52 2052 2052 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C15 OM1 . . . O 4 -11.422 5.628 -19.358 1 24.85 ? C15 OM1 1216 B 1 HETATM 2 C C16 OM1 . . . O 4 -12.5 6.037 -18.599 1 25.44 ? C16 OM1 1216 B 1 HETATM 3 C C14 OM1 . . . O 4 -10.347 4.992 -18.754 1 26 ? C14 OM1 1216 B 1 HETATM 4 C C17 OM1 . . . O 4 -12.49 5.807 -17.234 1 25.1 ? C17 OM1 1216 B 1 HETATM 5 C C23 OM1 . . . O 4 -9.333 7.597 -12.097 1 20.1 ? C23 OM1 1216 B 1 HETATM 6 C C6 OM1 . . . O 4 -5.868 6.326 -15.274 1 26.45 ? C6 OM1 1216 B 1 HETATM 7 C C10 OM1 . . . O 4 -6.844 4.561 -14.018 1 23.89 ? C10 OM1 1216 B 1 HETATM 8 C C24 OM1 . . . O 4 -9.293 8.526 -11.066 1 20.67 ? C24 OM1 1216 B 1 HETATM 9 C C7 OM1 . . . O 4 -5.671 7.056 -14.113 1 26.51 ? C7 OM1 1216 B 1 HETATM 10 C C9 OM1 . . . O 4 -6.652 5.273 -12.856 1 22.49 ? C9 OM1 1216 B 1 HETATM 11 C C13 OM1 . . . O 4 -10.337 4.762 -17.384 1 23.98 ? C13 OM1 1216 B 1 HETATM 12 C C30 OM1 . . . O 4 -10.58 9.121 -13.514 1 18.1 ? C30 OM1 1216 B 1 HETATM 13 C C5 OM1 . . . O 4 -6.455 5.075 -15.236 1 25.78 ? C5 OM1 1216 B 1 HETATM 14 C C18 OM1 . . . O 4 -11.424 5.175 -16.625 1 24.05 ? C18 OM1 1216 B 1 HETATM 15 C C22 OM1 . . . O 4 -9.962 7.884 -13.308 1 19.65 ? C22 OM1 1216 B 1 HETATM 16 C C25 OM1 . . . O 4 -9.915 9.736 -11.285 1 18.05 ? C25 OM1 1216 B 1 HETATM 17 C C29 OM1 . . . O 4 -10.53 10.032 -12.468 1 18.01 ? C29 OM1 1216 B 1 HETATM 18 C C8 OM1 . . . O 4 -6.066 6.52 -12.901 1 24.81 ? C8 OM1 1216 B 1 HETATM 19 C C2 OM1 . . . O 4 -9.156 4.083 -16.786 1 25.02 ? C2 OM1 1216 B 1 HETATM 20 C C31 OM1 . . . O 4 -11.258 9.493 -14.796 1 19.84 ? C31 OM1 1216 B 1 HETATM 21 C C27 OM1 . . . O 4 -10.565 11.805 -11.183 1 18.95 ? C27 OM1 1216 B 1 HETATM 22 C C12 OM1 . . . O 4 -5.61 8.556 -11.821 1 24.5 ? C12 OM1 1216 B 1 HETATM 23 C C4 OM1 . . . O 4 -6.678 4.286 -16.5 1 25.41 ? C4 OM1 1216 B 1 HETATM 24 C C19 OM1 . . . O 4 -11.5 4.974 -15.149 1 24.72 ? C19 OM1 1216 B 1 HETATM 25 C C21 OM1 . . . O 4 -9.951 6.804 -14.343 1 18.26 ? C21 OM1 1216 B 1 HETATM 26 N N3 OM1 . . . O 4 -7.948 4.663 -17.094 1 23.59 ? N3 OM1 1216 B 1 HETATM 27 N N20 OM1 . . . O 4 -11.326 6.23 -14.363 1 21.56 ? N20 OM1 1216 B 1 HETATM 28 O O33 OM1 . . . O 4 -11.217 10.722 -15.121 1 16.74 ? O33 OM1 1216 B 1 HETATM 29 O O1 OM1 . . . O 4 -9.276 3.09 -16.072 1 26.69 ? O1 OM1 1216 B 1 HETATM 30 O O32 OM1 . . . O 4 -11.799 8.58 -15.481 1 18.95 ? O32 OM1 1216 B 1 HETATM 31 O O26 OM1 . . . O 4 -9.988 10.764 -10.378 1 18.94 ? O26 OM1 1216 B 1 HETATM 32 O O28 OM1 . . . O 4 -11.076 11.301 -12.44 1 17.48 ? O28 OM1 1216 B 1 HETATM 33 O O11 OM1 . . . O 4 -5.925 7.167 -11.681 1 25.19 ? O11 OM1 1216 B 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 33 #