data_3ZUD # _model_server_result.job_id 999TDQmdf-tADjHJRHVPig _model_server_result.datetime_utc '2024-11-28 04:01:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3zud # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":305}' # _entry.id 3ZUD # _exptl.entry_id 3ZUD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 163.215 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description TRIS(HYDROXYETHYL)AMINOMETHANE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.7 _cell.angle_gamma 90 _cell.entry_id 3ZUD _cell.length_a 34.5 _cell.length_b 87.3 _cell.length_c 37.3 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3ZUD _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 56 A CYS 56 1_555 A SG CYS 178 A CYS 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? disulf ? disulf2 A SG CYS 97 A CYS 97 1_555 A SG CYS 101 A CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? covale ? covale1 A C HIC 1 A HIC 1 1_555 A N GLY 2 A GLY 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A ND2 ASN 138 A ASN 138 1_555 E C1 NAG . A NAG 304 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.559 ? metalc ? metalc1 A N HIC 1 A HIC 1 1_555 B CU CU . A CU 301 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.205 ? metalc ? metalc2 A ND1 HIC 1 A HIC 1 1_555 B CU CU . A CU 301 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.91 ? metalc ? metalc3 A ND1 HIC 1 A HIC 1 1_555 B CU CU . A CU 301 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.616 ? metalc ? metalc4 A NE2 HIS 86 A HIS 86 1_555 B CU CU . A CU 301 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.026 ? metalc ? metalc5 A NE2 HIS 86 A HIS 86 1_555 B CU CU . A CU 301 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.057 ? metalc ? metalc6 A NE2 HIS 87 A HIS 87 1_555 C CU CU . A CU 302 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.982 ? metalc ? metalc7 A NE2 HIS 87 A HIS 87 1_555 C CU CU . A CU 302 1_555 ? C ? ? ? ? ? ? ? ? ? ? 1.947 ? metalc ? metalc8 A OD1 ASP 189 A ASP 189 1_555 D CU CU . A CU 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? metalc ? metalc9 B CU CU . A CU 301 1_555 G O1 PEG . A PEG 306 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc10 B CU CU . A CU 301 1_555 I O HOH . A HOH 574 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.401 ? metalc ? metalc11 C CU CU . A CU 302 1_555 F O5 TAM . A TAM 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? metalc ? metalc12 C CU CU . A CU 302 1_555 F N TAM . A TAM 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc13 C CU CU . A CU 302 1_555 F O6 TAM . A TAM 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? metalc ? metalc14 D CU CU . A CU 303 1_555 I O HOH . A HOH 563 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? metalc ? metalc15 D CU CU . A CU 303 1_555 I O HOH . A HOH 564 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? # _chem_comp.formula 'C7 H17 N O3' _chem_comp.formula_weight 163.215 _chem_comp.id TAM _chem_comp.mon_nstd_flag . _chem_comp.name TRIS(HYDROXYETHYL)AMINOMETHANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 TAM sing 359 n n C C2 TAM sing 360 n n C C3 TAM sing 361 n n C N TAM sing 362 n n C1 C4 TAM sing 363 n n C1 H11 TAM sing 364 n n C1 H12 TAM sing 365 n n C2 C5 TAM sing 366 n n C2 H21 TAM sing 367 n n C2 H22 TAM sing 368 n n C3 C6 TAM sing 369 n n C3 H31 TAM sing 370 n n C3 H32 TAM sing 371 n n C4 O4 TAM sing 372 n n C4 H41 TAM sing 373 n n C4 H42 TAM sing 374 n n C5 O5 TAM sing 375 n n C5 H51 TAM sing 376 n n C5 H52 TAM sing 377 n n C6 O6 TAM sing 378 n n C6 H61 TAM sing 379 n n C6 H62 TAM sing 380 n n N HN1 TAM sing 381 n n N HN2 TAM sing 382 n n O4 HO4 TAM sing 383 n n O5 HO5 TAM sing 384 n n O6 HO6 TAM sing 385 n n # _atom_sites.entry_id 3ZUD _atom_sites.fract_transf_matrix[1][1] 0.028986 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007604 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011455 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.027717 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CU A 1 301 301 CU CU . C 2 CU A 1 302 302 CU CU . D 2 CU A 1 303 303 CU CU . E 3 NAG A 1 304 401 NAG NAG . F 4 TAM A 1 305 1229 TAM TAM . G 5 PEG A 1 306 1230 PEG PEG . H 5 PEG A 1 307 1231 PEG PEG . I 6 HOH A 1 401 2086 HOH HOH . I 6 HOH A 2 402 2140 HOH HOH . I 6 HOH A 3 403 2024 HOH HOH . I 6 HOH A 4 404 2136 HOH HOH . I 6 HOH A 5 405 2137 HOH HOH . I 6 HOH A 6 406 2177 HOH HOH . I 6 HOH A 7 407 2167 HOH HOH . I 6 HOH A 8 408 2094 HOH HOH . I 6 HOH A 9 409 2040 HOH HOH . I 6 HOH A 10 410 2130 HOH HOH . I 6 HOH A 11 411 2045 HOH HOH . I 6 HOH A 12 412 2183 HOH HOH . I 6 HOH A 13 413 2019 HOH HOH . I 6 HOH A 14 414 2029 HOH HOH . I 6 HOH A 15 415 2164 HOH HOH . I 6 HOH A 16 416 2062 HOH HOH . I 6 HOH A 17 417 2002 HOH HOH . I 6 HOH A 18 418 2091 HOH HOH . I 6 HOH A 19 419 2030 HOH HOH . I 6 HOH A 20 420 2168 HOH HOH . I 6 HOH A 21 421 2016 HOH HOH . I 6 HOH A 22 422 2163 HOH HOH . I 6 HOH A 23 423 2033 HOH HOH . I 6 HOH A 24 424 2004 HOH HOH . I 6 HOH A 25 425 2109 HOH HOH . I 6 HOH A 26 426 2119 HOH HOH . I 6 HOH A 27 427 2084 HOH HOH . I 6 HOH A 28 428 2027 HOH HOH . I 6 HOH A 29 429 2060 HOH HOH . I 6 HOH A 30 430 2133 HOH HOH . I 6 HOH A 31 431 2085 HOH HOH . I 6 HOH A 32 432 2141 HOH HOH . I 6 HOH A 33 433 2076 HOH HOH . I 6 HOH A 34 434 2054 HOH HOH . I 6 HOH A 35 435 2069 HOH HOH . I 6 HOH A 36 436 2126 HOH HOH . I 6 HOH A 37 437 2038 HOH HOH . I 6 HOH A 38 438 2107 HOH HOH . I 6 HOH A 39 439 2092 HOH HOH . I 6 HOH A 40 440 2043 HOH HOH . I 6 HOH A 41 441 2036 HOH HOH . I 6 HOH A 42 442 2193 HOH HOH . I 6 HOH A 43 443 2096 HOH HOH . I 6 HOH A 44 444 2148 HOH HOH . I 6 HOH A 45 445 2132 HOH HOH . I 6 HOH A 46 446 2048 HOH HOH . I 6 HOH A 47 447 2179 HOH HOH . I 6 HOH A 48 448 2196 HOH HOH . I 6 HOH A 49 449 2173 HOH HOH . I 6 HOH A 50 450 2089 HOH HOH . I 6 HOH A 51 451 2073 HOH HOH . I 6 HOH A 52 452 2007 HOH HOH . I 6 HOH A 53 453 2051 HOH HOH . I 6 HOH A 54 454 2121 HOH HOH . I 6 HOH A 55 455 2113 HOH HOH . I 6 HOH A 56 456 2160 HOH HOH . I 6 HOH A 57 457 2180 HOH HOH . I 6 HOH A 58 458 2079 HOH HOH . I 6 HOH A 59 459 2070 HOH HOH . I 6 HOH A 60 460 2185 HOH HOH . I 6 HOH A 61 461 2057 HOH HOH . I 6 HOH A 62 462 2035 HOH HOH . I 6 HOH A 63 463 2158 HOH HOH . I 6 HOH A 64 464 2022 HOH HOH . I 6 HOH A 65 465 2023 HOH HOH . I 6 HOH A 66 466 2138 HOH HOH . I 6 HOH A 67 467 2037 HOH HOH . I 6 HOH A 68 468 2097 HOH HOH . I 6 HOH A 69 469 2028 HOH HOH . I 6 HOH A 70 470 2142 HOH HOH . I 6 HOH A 71 471 2005 HOH HOH . I 6 HOH A 72 472 2197 HOH HOH . I 6 HOH A 73 473 2150 HOH HOH . I 6 HOH A 74 474 2184 HOH HOH . I 6 HOH A 75 475 2191 HOH HOH . I 6 HOH A 76 476 2112 HOH HOH . I 6 HOH A 77 477 2050 HOH HOH . I 6 HOH A 78 478 2025 HOH HOH . I 6 HOH A 79 479 2187 HOH HOH . I 6 HOH A 80 480 2063 HOH HOH . I 6 HOH A 81 481 2047 HOH HOH . I 6 HOH A 82 482 2159 HOH HOH . I 6 HOH A 83 483 2021 HOH HOH . I 6 HOH A 84 484 2082 HOH HOH . I 6 HOH A 85 485 2114 HOH HOH . I 6 HOH A 86 486 2058 HOH HOH . I 6 HOH A 87 487 2165 HOH HOH . I 6 HOH A 88 488 2156 HOH HOH . I 6 HOH A 89 489 2068 HOH HOH . I 6 HOH A 90 490 2052 HOH HOH . I 6 HOH A 91 491 2099 HOH HOH . I 6 HOH A 92 492 2144 HOH HOH . I 6 HOH A 93 493 2100 HOH HOH . I 6 HOH A 94 494 2110 HOH HOH . I 6 HOH A 95 495 2066 HOH HOH . I 6 HOH A 96 496 2049 HOH HOH . I 6 HOH A 97 497 2101 HOH HOH . I 6 HOH A 98 498 2115 HOH HOH . I 6 HOH A 99 499 2072 HOH HOH . I 6 HOH A 100 500 2161 HOH HOH . I 6 HOH A 101 501 2154 HOH HOH . I 6 HOH A 102 502 2071 HOH HOH . I 6 HOH A 103 503 2146 HOH HOH . I 6 HOH A 104 504 2015 HOH HOH . I 6 HOH A 105 505 2155 HOH HOH . I 6 HOH A 106 506 2145 HOH HOH . I 6 HOH A 107 507 2017 HOH HOH . I 6 HOH A 108 508 2139 HOH HOH . I 6 HOH A 109 509 2169 HOH HOH . I 6 HOH A 110 510 2186 HOH HOH . I 6 HOH A 111 511 2174 HOH HOH . I 6 HOH A 112 512 2098 HOH HOH . I 6 HOH A 113 513 2074 HOH HOH . I 6 HOH A 114 514 2122 HOH HOH . I 6 HOH A 115 515 2135 HOH HOH . I 6 HOH A 116 516 2093 HOH HOH . I 6 HOH A 117 517 2056 HOH HOH . I 6 HOH A 118 518 2081 HOH HOH . I 6 HOH A 119 519 2181 HOH HOH . I 6 HOH A 120 520 2194 HOH HOH . I 6 HOH A 121 521 2151 HOH HOH . I 6 HOH A 122 522 2026 HOH HOH . I 6 HOH A 123 523 2182 HOH HOH . I 6 HOH A 124 524 2152 HOH HOH . I 6 HOH A 125 525 2061 HOH HOH . I 6 HOH A 126 526 2111 HOH HOH . I 6 HOH A 127 527 2105 HOH HOH . I 6 HOH A 128 528 2006 HOH HOH . I 6 HOH A 129 529 2129 HOH HOH . I 6 HOH A 130 530 2195 HOH HOH . I 6 HOH A 131 531 2032 HOH HOH . I 6 HOH A 132 532 2124 HOH HOH . I 6 HOH A 133 533 2190 HOH HOH . I 6 HOH A 134 534 2188 HOH HOH . I 6 HOH A 135 535 2117 HOH HOH . I 6 HOH A 136 536 2106 HOH HOH . I 6 HOH A 137 537 2059 HOH HOH . I 6 HOH A 138 538 2128 HOH HOH . I 6 HOH A 139 539 2046 HOH HOH . I 6 HOH A 140 540 2176 HOH HOH . I 6 HOH A 141 541 2053 HOH HOH . I 6 HOH A 142 542 2149 HOH HOH . I 6 HOH A 143 543 2120 HOH HOH . I 6 HOH A 144 544 2075 HOH HOH . I 6 HOH A 145 545 2147 HOH HOH . I 6 HOH A 146 546 2090 HOH HOH . I 6 HOH A 147 547 2077 HOH HOH . I 6 HOH A 148 548 2080 HOH HOH . I 6 HOH A 149 549 2172 HOH HOH . I 6 HOH A 150 550 2157 HOH HOH . I 6 HOH A 151 551 2034 HOH HOH . I 6 HOH A 152 552 2125 HOH HOH . I 6 HOH A 153 553 2039 HOH HOH . I 6 HOH A 154 554 2143 HOH HOH . I 6 HOH A 155 555 2127 HOH HOH . I 6 HOH A 156 556 2166 HOH HOH . I 6 HOH A 157 557 2178 HOH HOH . I 6 HOH A 158 558 2192 HOH HOH . I 6 HOH A 159 559 2189 HOH HOH . I 6 HOH A 160 560 2116 HOH HOH . I 6 HOH A 161 561 2044 HOH HOH . I 6 HOH A 162 562 2078 HOH HOH . I 6 HOH A 163 563 2171 HOH HOH . I 6 HOH A 164 564 2170 HOH HOH . I 6 HOH A 165 565 2018 HOH HOH . I 6 HOH A 166 566 2123 HOH HOH . I 6 HOH A 167 567 2153 HOH HOH . I 6 HOH A 168 568 2118 HOH HOH . I 6 HOH A 169 569 2108 HOH HOH . I 6 HOH A 170 570 2175 HOH HOH . I 6 HOH A 171 571 2104 HOH HOH . I 6 HOH A 172 572 2162 HOH HOH . I 6 HOH A 173 573 2067 HOH HOH . I 6 HOH A 174 574 2001 HOH HOH . I 6 HOH A 175 575 2102 HOH HOH . I 6 HOH A 176 576 2087 HOH HOH . I 6 HOH A 177 577 2134 HOH HOH . I 6 HOH A 178 578 2095 HOH HOH . I 6 HOH A 179 579 2088 HOH HOH . I 6 HOH A 180 580 2103 HOH HOH . I 6 HOH A 181 581 2055 HOH HOH . I 6 HOH A 182 582 2064 HOH HOH . I 6 HOH A 183 583 2065 HOH HOH . I 6 HOH A 184 584 2010 HOH HOH . I 6 HOH A 185 585 2003 HOH HOH . I 6 HOH A 186 586 2011 HOH HOH . I 6 HOH A 187 587 2031 HOH HOH . I 6 HOH A 188 588 2009 HOH HOH . I 6 HOH A 189 589 2020 HOH HOH . I 6 HOH A 190 590 2012 HOH HOH . I 6 HOH A 191 591 2083 HOH HOH . I 6 HOH A 192 592 2014 HOH HOH . I 6 HOH A 193 593 2041 HOH HOH . I 6 HOH A 194 594 2013 HOH HOH . I 6 HOH A 195 595 2008 HOH HOH . I 6 HOH A 196 596 2042 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C TAM . . . F 4 1.05 16.957 8.117 1 35.47 ? C TAM 305 A 1 HETATM 2 C C1 TAM . . . F 4 1.982 17.501 9.203 1 36.36 ? C1 TAM 305 A 1 HETATM 3 C C2 TAM . . . F 4 0.986 17.922 6.933 1 35.4 ? C2 TAM 305 A 1 HETATM 4 C C3 TAM . . . F 4 -0.312 16.739 8.779 1 34.78 ? C3 TAM 305 A 1 HETATM 5 C C4 TAM . . . F 4 3.442 17.711 8.804 1 38.26 ? C4 TAM 305 A 1 HETATM 6 C C5 TAM . . . F 4 -0.271 17.775 6.086 1 35.18 ? C5 TAM 305 A 1 HETATM 7 C C6 TAM . . . F 4 -0.765 15.288 8.908 1 32.38 ? C6 TAM 305 A 1 HETATM 8 N N TAM . . . F 4 1.543 15.679 7.607 1 35.53 ? N TAM 305 A 1 HETATM 9 O O4 TAM . . . F 4 4.099 18.442 9.852 1 38.34 ? O4 TAM 305 A 1 HETATM 10 O O5 TAM . . . F 4 -0.074 16.732 5.125 1 34.9 ? O5 TAM 305 A 1 HETATM 11 O O6 TAM . . . F 4 -1.505 14.961 7.721 1 28.65 ? O6 TAM 305 A 1 # _model_server_stats.io_time_ms 93 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 11 #