data_3ZUX # _model_server_result.job_id NxAP2EePlki3lw3VlVQ6ZQ _model_server_result.datetime_utc '2024-11-22 06:31:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3zux # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1310}' # _entry.id 3ZUX # _exptl.entry_id 3ZUX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3ZUX _cell.length_a 73.33 _cell.length_b 73.33 _cell.length_c 163.52 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3ZUX _symmetry.cell_setting ? _symmetry.Int_Tables_number 91 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLN 82 A GLN 77 1_555 C NA NA . A NA 1311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc2 A SG CYS 92 A CYS 87 1_555 D HG HG . A HG 1312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.82 ? metalc ? metalc3 A OG SER 119 A SER 114 1_555 B NA NA . A NA 1310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.489 ? metalc ? metalc4 A OD1 ASN 120 A ASN 115 1_555 B NA NA . A NA 1310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc5 A O SER 133 A SER 128 1_555 B NA NA . A NA 1310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc6 A OG SER 133 A SER 128 1_555 B NA NA . A NA 1310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? metalc ? metalc7 A OG1 THR 137 A THR 132 1_555 B NA NA . A NA 1310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? metalc ? metalc8 A OE1 GLU 265 A GLU 260 1_555 B NA NA . A NA 1310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? metalc ? metalc9 A O GLU 265 A GLU 260 1_555 C NA NA . A NA 1311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? metalc ? metalc10 A O VAL 266 A VAL 261 1_555 C NA NA . A NA 1311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc11 A O MET 268 A MET 263 1_555 C NA NA . A NA 1311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? metalc ? metalc12 A OE1 GLN 269 A GLN 264 1_555 C NA NA . A NA 1311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3ZUX _atom_sites.fract_transf_matrix[1][1] 0.013637 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013637 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006115 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 1310 1310 NA NA . C 2 NA A 1 1311 1311 NA NA . D 3 HG A 1 1312 1312 HG HG . E 4 TCH A 1 1313 1313 TCH TCH . F 4 TCH A 1 1314 1314 TCH TCH . G 5 LDA A 1 1315 1315 LDA LDA . H 5 LDA A 1 1316 1316 LDA LDA . I 5 LDA A 1 1317 1317 LDA LDA . J 6 PTY A 1 1318 1318 PTY PTY . K 6 PTY A 1 1319 1319 PTY PTY . L 5 LDA A 1 1320 1320 LDA LDA . M 5 LDA A 1 1321 1321 LDA LDA . N 7 HOH A 1 2001 2001 HOH HOH . N 7 HOH A 2 2002 2002 HOH HOH . N 7 HOH A 3 2003 2003 HOH HOH . N 7 HOH A 4 2004 2004 HOH HOH . N 7 HOH A 5 2005 2005 HOH HOH . N 7 HOH A 6 2006 2006 HOH HOH . N 7 HOH A 7 2007 2007 HOH HOH . N 7 HOH A 8 2008 2008 HOH HOH . N 7 HOH A 9 2009 2009 HOH HOH . N 7 HOH A 10 2010 2010 HOH HOH . N 7 HOH A 11 2011 2011 HOH HOH . N 7 HOH A 12 2012 2012 HOH HOH . N 7 HOH A 13 2013 2013 HOH HOH . N 7 HOH A 14 2014 2014 HOH HOH . N 7 HOH A 15 2015 2015 HOH HOH . N 7 HOH A 16 2016 2016 HOH HOH . N 7 HOH A 17 2017 2017 HOH HOH . N 7 HOH A 18 2018 2018 HOH HOH . N 7 HOH A 19 2019 2019 HOH HOH . N 7 HOH A 20 2020 2020 HOH HOH . N 7 HOH A 21 2021 2021 HOH HOH . N 7 HOH A 22 2022 2022 HOH HOH . N 7 HOH A 23 2023 2023 HOH HOH . N 7 HOH A 24 2024 2024 HOH HOH . N 7 HOH A 25 2025 2025 HOH HOH . N 7 HOH A 26 2026 2026 HOH HOH . N 7 HOH A 27 2027 2027 HOH HOH . N 7 HOH A 28 2028 2028 HOH HOH . N 7 HOH A 29 2029 2029 HOH HOH . N 7 HOH A 30 2030 2030 HOH HOH . N 7 HOH A 31 2031 2031 HOH HOH . N 7 HOH A 32 2032 2032 HOH HOH . N 7 HOH A 33 2033 2033 HOH HOH . N 7 HOH A 34 2034 2034 HOH HOH . N 7 HOH A 35 2035 2035 HOH HOH . N 7 HOH A 36 2036 2036 HOH HOH . N 7 HOH A 37 2037 2037 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 16.542 _atom_site.Cartn_y 67.568 _atom_site.Cartn_z 71.325 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 42.88 _atom_site.pdbx_formal_charge 1 _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 1310 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #