data_3ZUY
#
_model_server_result.job_id            FpcKI5z4ZC4Qp7Ki1YWS0w 
_model_server_result.datetime_utc      '2024-11-07 12:58:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3zuy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":1310}' 
#
_entry.id    3ZUY 
#
_exptl.entry_id    3ZUY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3ZUY 
_cell.length_a            73.35 
_cell.length_b            73.35 
_cell.length_c            162.45 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3ZUY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        91 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 41 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE1 GLN 77 A GLN 77 1_555 C NA NA . A NA 1311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? 
metalc ? metalc2 A OG SER 114 A SER 114 1_555 B NA NA . A NA 1310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.526 ? 
metalc ? metalc3 A OD1 ASN 115 A ASN 115 1_555 B NA NA . A NA 1310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? 
metalc ? metalc4 A O SER 128 A SER 128 1_555 B NA NA . A NA 1310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? 
metalc ? metalc5 A OG SER 128 A SER 128 1_555 B NA NA . A NA 1310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? 
metalc ? metalc6 A OG1 THR 132 A THR 132 1_555 B NA NA . A NA 1310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? 
metalc ? metalc7 A OE1 GLU 260 A GLU 260 1_555 B NA NA . A NA 1310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? 
metalc ? metalc8 A O GLU 260 A GLU 260 1_555 C NA NA . A NA 1311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? 
metalc ? metalc9 A O VAL 261 A VAL 261 1_555 C NA NA . A NA 1311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? 
metalc ? metalc10 A O MET 263 A MET 263 1_555 C NA NA . A NA 1311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? 
metalc ? metalc11 A OE1 GLN 264 A GLN 264 1_555 C NA NA . A NA 1311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3ZUY 
_atom_sites.fract_transf_matrix[1][1]    0.013633 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013633 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006156 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NA A 1 1310 1310 NA NA . 
C 2 NA A 1 1311 1311 NA NA . 
D 3 TCH A 1 1312 1312 TCH TCH . 
E 3 TCH A 1 1313 1313 TCH TCH . 
F 4 LDA A 1 1314 1314 LDA LDA . 
G 4 LDA A 1 1315 1315 LDA LDA . 
H 4 LDA A 1 1316 1316 LDA LDA . 
I 4 LDA A 1 1317 1317 LDA LDA . 
J 4 LDA A 1 1318 1318 LDA LDA . 
K 5 PTY A 1 1319 1319 PTY PTY . 
L 5 PTY A 1 1320 1320 PTY PTY . 
M 6 HOH A 1 2001 2001 HOH HOH . 
M 6 HOH A 2 2002 2002 HOH HOH . 
M 6 HOH A 3 2003 2003 HOH HOH . 
M 6 HOH A 4 2004 2004 HOH HOH . 
M 6 HOH A 5 2005 2005 HOH HOH . 
M 6 HOH A 6 2006 2006 HOH HOH . 
M 6 HOH A 7 2007 2007 HOH HOH . 
M 6 HOH A 8 2008 2008 HOH HOH . 
M 6 HOH A 9 2009 2009 HOH HOH . 
M 6 HOH A 10 2010 2010 HOH HOH . 
M 6 HOH A 11 2011 2011 HOH HOH . 
M 6 HOH A 12 2012 2012 HOH HOH . 
M 6 HOH A 13 2013 2013 HOH HOH . 
M 6 HOH A 14 2014 2014 HOH HOH . 
M 6 HOH A 15 2015 2015 HOH HOH . 
M 6 HOH A 16 2016 2016 HOH HOH . 
M 6 HOH A 17 2017 2017 HOH HOH . 
M 6 HOH A 18 2018 2018 HOH HOH . 
M 6 HOH A 19 2019 2019 HOH HOH . 
M 6 HOH A 20 2020 2020 HOH HOH . 
M 6 HOH A 21 2021 2021 HOH HOH . 
M 6 HOH A 22 2022 2022 HOH HOH . 
M 6 HOH A 23 2023 2023 HOH HOH . 
M 6 HOH A 24 2024 2024 HOH HOH . 
M 6 HOH A 25 2025 2025 HOH HOH . 
M 6 HOH A 26 2026 2026 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         B 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               16.421 
_atom_site.Cartn_y               67.456 
_atom_site.Cartn_z               70.835 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        46.98 
_atom_site.pdbx_formal_charge    1 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           1310 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           227 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#