data_3ZUY # _model_server_result.job_id EtJhD2gzYdy5dwLmDd7fTw _model_server_result.datetime_utc '2024-11-07 12:35:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3zuy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":1317}' # _entry.id 3ZUY # _exptl.entry_id 3ZUY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 229.402 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'LAURYL DIMETHYLAMINE-N-OXIDE' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3ZUY _cell.length_a 73.35 _cell.length_b 73.35 _cell.length_c 162.45 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3ZUY _symmetry.cell_setting ? _symmetry.Int_Tables_number 91 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLN 77 A GLN 77 1_555 C NA NA . A NA 1311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc2 A OG SER 114 A SER 114 1_555 B NA NA . A NA 1310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.526 ? metalc ? metalc3 A OD1 ASN 115 A ASN 115 1_555 B NA NA . A NA 1310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc4 A O SER 128 A SER 128 1_555 B NA NA . A NA 1310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? metalc ? metalc5 A OG SER 128 A SER 128 1_555 B NA NA . A NA 1310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc6 A OG1 THR 132 A THR 132 1_555 B NA NA . A NA 1310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc7 A OE1 GLU 260 A GLU 260 1_555 B NA NA . A NA 1310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? metalc ? metalc8 A O GLU 260 A GLU 260 1_555 C NA NA . A NA 1311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc9 A O VAL 261 A VAL 261 1_555 C NA NA . A NA 1311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc10 A O MET 263 A MET 263 1_555 C NA NA . A NA 1311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? metalc ? metalc11 A OE1 GLN 264 A GLN 264 1_555 C NA NA . A NA 1311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? # _chem_comp.formula 'C14 H31 N O' _chem_comp.formula_weight 229.402 _chem_comp.id LDA _chem_comp.mon_nstd_flag . _chem_comp.name 'LAURYL DIMETHYLAMINE-N-OXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 O1 LDA sing 173 n n N1 CM1 LDA sing 174 n n N1 CM2 LDA sing 175 n n N1 C1 LDA sing 176 n n CM1 HM11 LDA sing 177 n n CM1 HM12 LDA sing 178 n n CM1 HM13 LDA sing 179 n n CM2 HM21 LDA sing 180 n n CM2 HM22 LDA sing 181 n n CM2 HM23 LDA sing 182 n n C1 C2 LDA sing 183 n n C1 H11 LDA sing 184 n n C1 H12 LDA sing 185 n n C2 C3 LDA sing 186 n n C2 H21 LDA sing 187 n n C2 H22 LDA sing 188 n n C3 C4 LDA sing 189 n n C3 H31 LDA sing 190 n n C3 H32 LDA sing 191 n n C4 C5 LDA sing 192 n n C4 H41 LDA sing 193 n n C4 H42 LDA sing 194 n n C5 C6 LDA sing 195 n n C5 H51 LDA sing 196 n n C5 H52 LDA sing 197 n n C6 C7 LDA sing 198 n n C6 H61 LDA sing 199 n n C6 H62 LDA sing 200 n n C7 C8 LDA sing 201 n n C7 H71 LDA sing 202 n n C7 H72 LDA sing 203 n n C8 C9 LDA sing 204 n n C8 H81 LDA sing 205 n n C8 H82 LDA sing 206 n n C9 C10 LDA sing 207 n n C9 H91 LDA sing 208 n n C9 H92 LDA sing 209 n n C10 C11 LDA sing 210 n n C10 H101 LDA sing 211 n n C10 H102 LDA sing 212 n n C11 C12 LDA sing 213 n n C11 H111 LDA sing 214 n n C11 H112 LDA sing 215 n n C12 H121 LDA sing 216 n n C12 H122 LDA sing 217 n n C12 H123 LDA sing 218 n n # _atom_sites.entry_id 3ZUY _atom_sites.fract_transf_matrix[1][1] 0.013633 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013633 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006156 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 1310 1310 NA NA . C 2 NA A 1 1311 1311 NA NA . D 3 TCH A 1 1312 1312 TCH TCH . E 3 TCH A 1 1313 1313 TCH TCH . F 4 LDA A 1 1314 1314 LDA LDA . G 4 LDA A 1 1315 1315 LDA LDA . H 4 LDA A 1 1316 1316 LDA LDA . I 4 LDA A 1 1317 1317 LDA LDA . J 4 LDA A 1 1318 1318 LDA LDA . K 5 PTY A 1 1319 1319 PTY PTY . L 5 PTY A 1 1320 1320 PTY PTY . M 6 HOH A 1 2001 2001 HOH HOH . M 6 HOH A 2 2002 2002 HOH HOH . M 6 HOH A 3 2003 2003 HOH HOH . M 6 HOH A 4 2004 2004 HOH HOH . M 6 HOH A 5 2005 2005 HOH HOH . M 6 HOH A 6 2006 2006 HOH HOH . M 6 HOH A 7 2007 2007 HOH HOH . M 6 HOH A 8 2008 2008 HOH HOH . M 6 HOH A 9 2009 2009 HOH HOH . M 6 HOH A 10 2010 2010 HOH HOH . M 6 HOH A 11 2011 2011 HOH HOH . M 6 HOH A 12 2012 2012 HOH HOH . M 6 HOH A 13 2013 2013 HOH HOH . M 6 HOH A 14 2014 2014 HOH HOH . M 6 HOH A 15 2015 2015 HOH HOH . M 6 HOH A 16 2016 2016 HOH HOH . M 6 HOH A 17 2017 2017 HOH HOH . M 6 HOH A 18 2018 2018 HOH HOH . M 6 HOH A 19 2019 2019 HOH HOH . M 6 HOH A 20 2020 2020 HOH HOH . M 6 HOH A 21 2021 2021 HOH HOH . M 6 HOH A 22 2022 2022 HOH HOH . M 6 HOH A 23 2023 2023 HOH HOH . M 6 HOH A 24 2024 2024 HOH HOH . M 6 HOH A 25 2025 2025 HOH HOH . M 6 HOH A 26 2026 2026 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 LDA . . . I 4 33.868 71.68 68.77 1 102.7 ? N1 LDA 1317 A 1 HETATM 2 O O1 LDA . . . I 4 32.59 72.184 69.293 1 103.24 ? O1 LDA 1317 A 1 HETATM 3 C CM1 LDA . . . I 4 34.806 72.805 68.635 1 102.74 ? CM1 LDA 1317 A 1 HETATM 4 C CM2 LDA . . . I 4 33.635 71.092 67.441 1 102.61 ? CM2 LDA 1317 A 1 HETATM 5 C C1 LDA . . . I 4 34.446 70.636 69.65 1 102.02 ? C1 LDA 1317 A 1 HETATM 6 C C2 LDA . . . I 4 34.454 71.014 71.14 1 100.89 ? C2 LDA 1317 A 1 HETATM 7 C C3 LDA . . . I 4 35.515 70.192 71.873 1 100.23 ? C3 LDA 1317 A 1 HETATM 8 C C4 LDA . . . I 4 34.877 68.984 72.556 1 99.48 ? C4 LDA 1317 A 1 HETATM 9 C C5 LDA . . . I 4 35.061 69.112 74.07 1 99.05 ? C5 LDA 1317 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 342 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 9 #