data_3ZUY # _model_server_result.job_id rvfL2IVUPYdKCdjq_RgTcg _model_server_result.datetime_utc '2024-11-07 12:50:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3zuy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":1319}' # _entry.id 3ZUY # _exptl.entry_id 3ZUY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 734.039 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PHOSPHATIDYLETHANOLAMINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3ZUY _cell.length_a 73.35 _cell.length_b 73.35 _cell.length_c 162.45 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3ZUY _symmetry.cell_setting ? _symmetry.Int_Tables_number 91 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 K N N ? 5 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLN 77 A GLN 77 1_555 C NA NA . A NA 1311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc2 A OG SER 114 A SER 114 1_555 B NA NA . A NA 1310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.526 ? metalc ? metalc3 A OD1 ASN 115 A ASN 115 1_555 B NA NA . A NA 1310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc4 A O SER 128 A SER 128 1_555 B NA NA . A NA 1310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? metalc ? metalc5 A OG SER 128 A SER 128 1_555 B NA NA . A NA 1310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc6 A OG1 THR 132 A THR 132 1_555 B NA NA . A NA 1310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc7 A OE1 GLU 260 A GLU 260 1_555 B NA NA . A NA 1310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? metalc ? metalc8 A O GLU 260 A GLU 260 1_555 C NA NA . A NA 1311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc9 A O VAL 261 A VAL 261 1_555 C NA NA . A NA 1311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc10 A O MET 263 A MET 263 1_555 C NA NA . A NA 1311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? metalc ? metalc11 A OE1 GLN 264 A GLN 264 1_555 C NA NA . A NA 1311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? # _chem_comp.formula 'C40 H80 N O8 P' _chem_comp.formula_weight 734.039 _chem_comp.id PTY _chem_comp.mon_nstd_flag . _chem_comp.name PHOSPHATIDYLETHANOLAMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O4 PTY sing 323 n n C1 C6 PTY sing 324 n n C1 HC11 PTY sing 325 n n C1 HC12 PTY sing 326 n n C2 C3 PTY sing 327 n n C2 N1 PTY sing 328 n n C2 HC21 PTY sing 329 n n C2 HC22 PTY sing 330 n n C3 O11 PTY sing 331 n n C3 HC31 PTY sing 332 n n C3 HC32 PTY sing 333 n n O4 C30 PTY sing 334 n n C5 C6 PTY sing 335 n n C5 O14 PTY sing 336 n n C5 HC51 PTY sing 337 n n C5 HC52 PTY sing 338 n n C6 O7 PTY sing 339 n n C6 HC6 PTY sing 340 n n O7 C8 PTY sing 341 n n C8 O10 PTY doub 342 n n C8 C11 PTY sing 343 n n C11 C12 PTY sing 344 n n C11 H111 PTY sing 345 n n C11 H112 PTY sing 346 n n C12 C13 PTY sing 347 n n C12 H121 PTY sing 348 n n C12 H122 PTY sing 349 n n C13 C14 PTY sing 350 n n C13 H131 PTY sing 351 n n C13 H132 PTY sing 352 n n C14 C15 PTY sing 353 n n C14 H141 PTY sing 354 n n C14 H142 PTY sing 355 n n C15 C16 PTY sing 356 n n C15 H151 PTY sing 357 n n C15 H152 PTY sing 358 n n C16 C17 PTY sing 359 n n C16 H161 PTY sing 360 n n C16 H162 PTY sing 361 n n C17 C18 PTY sing 362 n n C17 H171 PTY sing 363 n n C17 H172 PTY sing 364 n n C18 C19 PTY sing 365 n n C18 H181 PTY sing 366 n n C18 H182 PTY sing 367 n n C19 C20 PTY sing 368 n n C19 H191 PTY sing 369 n n C19 H192 PTY sing 370 n n C20 C21 PTY sing 371 n n C20 H201 PTY sing 372 n n C20 H202 PTY sing 373 n n C21 C22 PTY sing 374 n n C21 H211 PTY sing 375 n n C21 H212 PTY sing 376 n n C22 C23 PTY sing 377 n n C22 H221 PTY sing 378 n n C22 H222 PTY sing 379 n n C23 C24 PTY sing 380 n n C23 H231 PTY sing 381 n n C23 H232 PTY sing 382 n n C24 C25 PTY sing 383 n n C24 H241 PTY sing 384 n n C24 H242 PTY sing 385 n n C25 C26 PTY sing 386 n n C25 H251 PTY sing 387 n n C25 H252 PTY sing 388 n n C26 C27 PTY sing 389 n n C26 H261 PTY sing 390 n n C26 H262 PTY sing 391 n n C27 C28 PTY sing 392 n n C27 H271 PTY sing 393 n n C27 H272 PTY sing 394 n n C28 C29 PTY sing 395 n n C28 H281 PTY sing 396 n n C28 H282 PTY sing 397 n n C29 H291 PTY sing 398 n n C29 H292 PTY sing 399 n n C29 H293 PTY sing 400 n n C30 C31 PTY sing 401 n n C30 O30 PTY doub 402 n n C31 C32 PTY sing 403 n n C31 H311 PTY sing 404 n n C31 H312 PTY sing 405 n n C32 C33 PTY sing 406 n n C32 H321 PTY sing 407 n n C32 H322 PTY sing 408 n n C33 C34 PTY sing 409 n n C33 H331 PTY sing 410 n n C33 H332 PTY sing 411 n n C34 C35 PTY sing 412 n n C34 H341 PTY sing 413 n n C34 H342 PTY sing 414 n n C35 C36 PTY sing 415 n n C35 H351 PTY sing 416 n n C35 H352 PTY sing 417 n n C36 C37 PTY sing 418 n n C36 H361 PTY sing 419 n n C36 H362 PTY sing 420 n n C37 C38 PTY sing 421 n n C37 H371 PTY sing 422 n n C37 H372 PTY sing 423 n n C38 C39 PTY sing 424 n n C38 H381 PTY sing 425 n n C38 H382 PTY sing 426 n n C39 C40 PTY sing 427 n n C39 H391 PTY sing 428 n n C39 H392 PTY sing 429 n n C40 C41 PTY sing 430 n n C40 H401 PTY sing 431 n n C40 H402 PTY sing 432 n n C41 C42 PTY sing 433 n n C41 H411 PTY sing 434 n n C41 H412 PTY sing 435 n n C42 C43 PTY sing 436 n n C42 H421 PTY sing 437 n n C42 H422 PTY sing 438 n n C43 C44 PTY sing 439 n n C43 H431 PTY sing 440 n n C43 H432 PTY sing 441 n n C44 H441 PTY sing 442 n n C44 H442 PTY sing 443 n n C44 H443 PTY sing 444 n n P1 O11 PTY sing 445 n n P1 O12 PTY sing 446 n n P1 O13 PTY doub 447 n n P1 O14 PTY sing 448 n n O12 H12O PTY sing 449 n n N1 HN11 PTY sing 450 n n N1 HN12 PTY sing 451 n n # _atom_sites.entry_id 3ZUY _atom_sites.fract_transf_matrix[1][1] 0.013633 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013633 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006156 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 1310 1310 NA NA . C 2 NA A 1 1311 1311 NA NA . D 3 TCH A 1 1312 1312 TCH TCH . E 3 TCH A 1 1313 1313 TCH TCH . F 4 LDA A 1 1314 1314 LDA LDA . G 4 LDA A 1 1315 1315 LDA LDA . H 4 LDA A 1 1316 1316 LDA LDA . I 4 LDA A 1 1317 1317 LDA LDA . J 4 LDA A 1 1318 1318 LDA LDA . K 5 PTY A 1 1319 1319 PTY PTY . L 5 PTY A 1 1320 1320 PTY PTY . M 6 HOH A 1 2001 2001 HOH HOH . M 6 HOH A 2 2002 2002 HOH HOH . M 6 HOH A 3 2003 2003 HOH HOH . M 6 HOH A 4 2004 2004 HOH HOH . M 6 HOH A 5 2005 2005 HOH HOH . M 6 HOH A 6 2006 2006 HOH HOH . M 6 HOH A 7 2007 2007 HOH HOH . M 6 HOH A 8 2008 2008 HOH HOH . M 6 HOH A 9 2009 2009 HOH HOH . M 6 HOH A 10 2010 2010 HOH HOH . M 6 HOH A 11 2011 2011 HOH HOH . M 6 HOH A 12 2012 2012 HOH HOH . M 6 HOH A 13 2013 2013 HOH HOH . M 6 HOH A 14 2014 2014 HOH HOH . M 6 HOH A 15 2015 2015 HOH HOH . M 6 HOH A 16 2016 2016 HOH HOH . M 6 HOH A 17 2017 2017 HOH HOH . M 6 HOH A 18 2018 2018 HOH HOH . M 6 HOH A 19 2019 2019 HOH HOH . M 6 HOH A 20 2020 2020 HOH HOH . M 6 HOH A 21 2021 2021 HOH HOH . M 6 HOH A 22 2022 2022 HOH HOH . M 6 HOH A 23 2023 2023 HOH HOH . M 6 HOH A 24 2024 2024 HOH HOH . M 6 HOH A 25 2025 2025 HOH HOH . M 6 HOH A 26 2026 2026 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PTY . . . K 5 28.868 54.297 70.779 1 100.05 ? C1 PTY 1319 A 1 HETATM 2 C C2 PTY . . . K 5 27.899 51.141 65.505 1 107.65 ? C2 PTY 1319 A 1 HETATM 3 C C3 PTY . . . K 5 28.928 52.091 64.907 1 107.84 ? C3 PTY 1319 A 1 HETATM 4 O O4 PTY . . . K 5 27.812 55 71.29 1 98.37 ? O4 PTY 1319 A 1 HETATM 5 C C5 PTY . . . K 5 30.221 54.353 68.712 1 103.6 ? C5 PTY 1319 A 1 HETATM 6 C C6 PTY . . . K 5 29.85 55.11 69.962 1 101.84 ? C6 PTY 1319 A 1 HETATM 7 O O7 PTY . . . K 5 30.874 55.605 70.847 1 101.94 ? O7 PTY 1319 A 1 HETATM 8 C C8 PTY . . . K 5 32.095 56.269 70.701 1 100.8 ? C8 PTY 1319 A 1 HETATM 9 O O10 PTY . . . K 5 32.749 55.944 69.755 1 101.58 ? O10 PTY 1319 A 1 HETATM 10 C C11 PTY . . . K 5 32.501 57.303 71.727 1 98.63 ? C11 PTY 1319 A 1 HETATM 11 C C12 PTY . . . K 5 33.032 58.652 71.271 1 96.89 ? C12 PTY 1319 A 1 HETATM 12 C C13 PTY . . . K 5 33.706 59.306 72.485 1 95.65 ? C13 PTY 1319 A 1 HETATM 13 C C14 PTY . . . K 5 32.759 59.779 73.557 1 94.8 ? C14 PTY 1319 A 1 HETATM 14 C C15 PTY . . . K 5 33.324 60.134 74.979 1 94.31 ? C15 PTY 1319 A 1 HETATM 15 C C16 PTY . . . K 5 32.246 60.353 76.126 1 93.2 ? C16 PTY 1319 A 1 HETATM 16 C C17 PTY . . . K 5 32.573 60.983 77.521 1 92.22 ? C17 PTY 1319 A 1 HETATM 17 C C18 PTY . . . K 5 32.78 59.933 78.675 1 91.82 ? C18 PTY 1319 A 1 HETATM 18 C C19 PTY . . . K 5 33.75 60.212 79.907 1 91.21 ? C19 PTY 1319 A 1 HETATM 19 C C30 PTY . . . K 5 27.933 55.917 72.315 1 97.21 ? C30 PTY 1319 A 1 HETATM 20 C C31 PTY . . . K 5 28.584 55.594 73.658 1 95.98 ? C31 PTY 1319 A 1 HETATM 21 O O30 PTY . . . K 5 27.46 56.919 72.013 1 97.47 ? O30 PTY 1319 A 1 HETATM 22 C C32 PTY . . . K 5 29.104 56.733 74.419 1 95.38 ? C32 PTY 1319 A 1 HETATM 23 C C33 PTY . . . K 5 28.996 56.337 75.859 1 95.37 ? C33 PTY 1319 A 1 HETATM 24 C C34 PTY . . . K 5 30.001 57.03 76.845 1 95.21 ? C34 PTY 1319 A 1 HETATM 25 C C35 PTY . . . K 5 30.716 56.147 77.943 1 95.92 ? C35 PTY 1319 A 1 HETATM 26 C C36 PTY . . . K 5 30.503 56.908 79.24 1 96.51 ? C36 PTY 1319 A 1 HETATM 27 C C37 PTY . . . K 5 30.413 55.899 80.416 1 95.98 ? C37 PTY 1319 A 1 HETATM 28 C C38 PTY . . . K 5 31.023 56.419 81.654 1 95.36 ? C38 PTY 1319 A 1 HETATM 29 P P1 PTY . . . K 5 29.847 54.482 65.932 1 106.15 ? P1 PTY 1319 A 1 HETATM 30 O O11 PTY . . . K 5 29.301 52.921 66.028 1 107.28 ? O11 PTY 1319 A 1 HETATM 31 O O12 PTY . . . K 5 31.161 54.644 65.213 1 106.48 ? O12 PTY 1319 A 1 HETATM 32 O O13 PTY . . . K 5 28.952 55.358 64.901 1 105.8 ? O13 PTY 1319 A 1 HETATM 33 O O14 PTY . . . K 5 29.719 55.033 67.518 1 105.19 ? O14 PTY 1319 A 1 HETATM 34 N N1 PTY . . . K 5 28.731 50.063 66.028 1 107.47 ? N1 PTY 1319 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 34 #