data_3ZV5
#
_model_server_result.job_id            daQi0Ednljb-VqCb82l54g 
_model_server_result.datetime_utc      '2024-10-16 10:30:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3zv5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1278}' 
#
_entry.id    3ZV5 
#
_exptl.entry_id    3ZV5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              186.207 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            BIPHENYL-2,3-DIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3ZV5 
_cell.length_a            75.394 
_cell.length_b            75.394 
_cell.length_c            173.567 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3ZV5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C12 H10 O2' 
_chem_comp.formula_weight    186.207 
_chem_comp.id                BPY 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              BIPHENYL-2,3-DIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CK1 CK2 BPY doub 70 n y 
CK1 CK6 BPY sing 71 n y 
CK1 HCK1 BPY sing 72 n n 
CK2 CK3 BPY sing 73 n y 
CK2 CK7 BPY sing 74 n y 
CK3 CK4 BPY doub 75 n y 
CK3 OK2 BPY sing 76 n n 
CK4 CK5 BPY sing 77 n y 
CK4 OK1 BPY sing 78 n n 
CK5 CK6 BPY doub 79 n y 
CK5 HCK5 BPY sing 80 n n 
CK6 HCK6 BPY sing 81 n n 
CK7 CK8 BPY doub 82 n y 
CK7 CKC BPY sing 83 n y 
CK8 CK9 BPY sing 84 n y 
CK8 HCK8 BPY sing 85 n n 
CK9 CKA BPY doub 86 n y 
CK9 HCK9 BPY sing 87 n n 
CKA CKB BPY sing 88 n y 
CKA HC10 BPY sing 89 n n 
CKB CKC BPY doub 90 n y 
CKB HC11 BPY sing 91 n n 
CKC HC12 BPY sing 92 n n 
OK1 H0K1 BPY sing 93 n n 
OK2 HOK2 BPY sing 94 n n 
#
_atom_sites.entry_id                     3ZV5 
_atom_sites.fract_transf_matrix[1][1]    0.013264 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013264 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005761 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NAD A 1 1277 1277 NAD NAD . 
D 3 BPY A 1 1278 1278 BPY BPY . 
E 2 NAD B 1 1277 1277 NAD NAD . 
F 4 HOH A 1 2001 2001 HOH HOH . 
F 4 HOH A 2 2002 2002 HOH HOH . 
F 4 HOH A 3 2003 2003 HOH HOH . 
F 4 HOH A 4 2004 2004 HOH HOH . 
F 4 HOH A 5 2005 2005 HOH HOH . 
F 4 HOH A 6 2006 2006 HOH HOH . 
F 4 HOH A 7 2007 2007 HOH HOH . 
F 4 HOH A 8 2008 2008 HOH HOH . 
F 4 HOH A 9 2009 2009 HOH HOH . 
F 4 HOH A 10 2010 2010 HOH HOH . 
F 4 HOH A 11 2011 2011 HOH HOH . 
F 4 HOH A 12 2012 2012 HOH HOH . 
F 4 HOH A 13 2013 2013 HOH HOH . 
F 4 HOH A 14 2014 2014 HOH HOH . 
F 4 HOH A 15 2015 2015 HOH HOH . 
F 4 HOH A 16 2016 2016 HOH HOH . 
F 4 HOH A 17 2017 2017 HOH HOH . 
F 4 HOH A 18 2018 2018 HOH HOH . 
F 4 HOH A 19 2019 2019 HOH HOH . 
F 4 HOH A 20 2020 2020 HOH HOH . 
F 4 HOH A 21 2021 2021 HOH HOH . 
F 4 HOH A 22 2022 2022 HOH HOH . 
F 4 HOH A 23 2023 2023 HOH HOH . 
F 4 HOH A 24 2024 2024 HOH HOH . 
F 4 HOH A 25 2025 2025 HOH HOH . 
F 4 HOH A 26 2026 2026 HOH HOH . 
F 4 HOH A 27 2027 2027 HOH HOH . 
F 4 HOH A 28 2028 2028 HOH HOH . 
F 4 HOH A 29 2029 2029 HOH HOH . 
F 4 HOH A 30 2030 2030 HOH HOH . 
F 4 HOH A 31 2031 2031 HOH HOH . 
F 4 HOH A 32 2032 2032 HOH HOH . 
F 4 HOH A 33 2033 2033 HOH HOH . 
F 4 HOH A 34 2034 2034 HOH HOH . 
F 4 HOH A 35 2035 2035 HOH HOH . 
F 4 HOH A 36 2036 2036 HOH HOH . 
F 4 HOH A 37 2037 2037 HOH HOH . 
F 4 HOH A 38 2038 2038 HOH HOH . 
F 4 HOH A 39 2039 2039 HOH HOH . 
F 4 HOH A 40 2040 2040 HOH HOH . 
F 4 HOH A 41 2041 2041 HOH HOH . 
F 4 HOH A 42 2042 2042 HOH HOH . 
F 4 HOH A 43 2043 2043 HOH HOH . 
F 4 HOH A 44 2044 2044 HOH HOH . 
F 4 HOH A 45 2045 2045 HOH HOH . 
F 4 HOH A 46 2046 2046 HOH HOH . 
F 4 HOH A 47 2047 2047 HOH HOH . 
F 4 HOH A 48 2048 2048 HOH HOH . 
F 4 HOH A 49 2049 2049 HOH HOH . 
F 4 HOH A 50 2050 2050 HOH HOH . 
F 4 HOH A 51 2051 2051 HOH HOH . 
F 4 HOH A 52 2052 2052 HOH HOH . 
F 4 HOH A 53 2053 2053 HOH HOH . 
F 4 HOH A 54 2054 2054 HOH HOH . 
F 4 HOH A 55 2055 2055 HOH HOH . 
F 4 HOH A 56 2056 2056 HOH HOH . 
F 4 HOH A 57 2057 2057 HOH HOH . 
F 4 HOH A 58 2058 2058 HOH HOH . 
F 4 HOH A 59 2059 2059 HOH HOH . 
F 4 HOH A 60 2060 2060 HOH HOH . 
F 4 HOH A 61 2061 2061 HOH HOH . 
F 4 HOH A 62 2062 2062 HOH HOH . 
F 4 HOH A 63 2063 2063 HOH HOH . 
F 4 HOH A 64 2064 2064 HOH HOH . 
F 4 HOH A 65 2065 2065 HOH HOH . 
F 4 HOH A 66 2066 2066 HOH HOH . 
F 4 HOH A 67 2067 2067 HOH HOH . 
F 4 HOH A 68 2068 2068 HOH HOH . 
F 4 HOH A 69 2069 2069 HOH HOH . 
F 4 HOH A 70 2070 2070 HOH HOH . 
F 4 HOH A 71 2071 2071 HOH HOH . 
F 4 HOH A 72 2072 2072 HOH HOH . 
G 4 HOH B 1 2001 2001 HOH HOH . 
G 4 HOH B 2 2002 2002 HOH HOH . 
G 4 HOH B 3 2003 2003 HOH HOH . 
G 4 HOH B 4 2004 2004 HOH HOH . 
G 4 HOH B 5 2005 2005 HOH HOH . 
G 4 HOH B 6 2006 2006 HOH HOH . 
G 4 HOH B 7 2007 2007 HOH HOH . 
G 4 HOH B 8 2008 2008 HOH HOH . 
G 4 HOH B 9 2009 2009 HOH HOH . 
G 4 HOH B 10 2010 2010 HOH HOH . 
G 4 HOH B 11 2011 2011 HOH HOH . 
G 4 HOH B 12 2012 2012 HOH HOH . 
G 4 HOH B 13 2013 2013 HOH HOH . 
G 4 HOH B 14 2014 2014 HOH HOH . 
G 4 HOH B 15 2015 2015 HOH HOH . 
G 4 HOH B 16 2016 2016 HOH HOH . 
G 4 HOH B 17 2017 2017 HOH HOH . 
G 4 HOH B 18 2018 2018 HOH HOH . 
G 4 HOH B 19 2019 2019 HOH HOH . 
G 4 HOH B 20 2020 2020 HOH HOH . 
G 4 HOH B 21 2021 2021 HOH HOH . 
G 4 HOH B 22 2022 2022 HOH HOH . 
G 4 HOH B 23 2023 2023 HOH HOH . 
G 4 HOH B 24 2024 2024 HOH HOH . 
G 4 HOH B 25 2025 2025 HOH HOH . 
G 4 HOH B 26 2026 2026 HOH HOH . 
G 4 HOH B 27 2027 2027 HOH HOH . 
G 4 HOH B 28 2028 2028 HOH HOH . 
G 4 HOH B 29 2029 2029 HOH HOH . 
G 4 HOH B 30 2030 2030 HOH HOH . 
G 4 HOH B 31 2031 2031 HOH HOH . 
G 4 HOH B 32 2032 2032 HOH HOH . 
G 4 HOH B 33 2033 2033 HOH HOH . 
G 4 HOH B 34 2034 2034 HOH HOH . 
G 4 HOH B 35 2035 2035 HOH HOH . 
G 4 HOH B 36 2036 2036 HOH HOH . 
G 4 HOH B 37 2037 2037 HOH HOH . 
G 4 HOH B 38 2038 2038 HOH HOH . 
G 4 HOH B 39 2039 2039 HOH HOH . 
G 4 HOH B 40 2040 2040 HOH HOH . 
G 4 HOH B 41 2041 2041 HOH HOH . 
G 4 HOH B 42 2042 2042 HOH HOH . 
G 4 HOH B 43 2043 2043 HOH HOH . 
G 4 HOH B 44 2044 2044 HOH HOH . 
G 4 HOH B 45 2045 2045 HOH HOH . 
G 4 HOH B 46 2046 2046 HOH HOH . 
G 4 HOH B 47 2047 2047 HOH HOH . 
G 4 HOH B 48 2048 2048 HOH HOH . 
G 4 HOH B 49 2049 2049 HOH HOH . 
G 4 HOH B 50 2050 2050 HOH HOH . 
G 4 HOH B 51 2051 2051 HOH HOH . 
G 4 HOH B 52 2052 2052 HOH HOH . 
G 4 HOH B 53 2053 2053 HOH HOH . 
G 4 HOH B 54 2054 2054 HOH HOH . 
G 4 HOH B 55 2055 2055 HOH HOH . 
G 4 HOH B 56 2056 2056 HOH HOH . 
G 4 HOH B 57 2057 2057 HOH HOH . 
G 4 HOH B 58 2058 2058 HOH HOH . 
G 4 HOH B 59 2059 2059 HOH HOH . 
G 4 HOH B 60 2060 2060 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CK1 BPY . . . D 3 -1.102 -22.428 -4.306 0.7 53.99 ? CK1 BPY 1278 A 1 
HETATM 2 C CK2 BPY . . . D 3 -1.814 -21.242 -4.083 0.7 53.92 ? CK2 BPY 1278 A 1 
HETATM 3 C CK3 BPY . . . D 3 -1.114 -20.047 -4.212 0.7 53.51 ? CK3 BPY 1278 A 1 
HETATM 4 C CK4 BPY . . . D 3 0.231 -20.058 -4.549 0.7 53.28 ? CK4 BPY 1278 A 1 
HETATM 5 C CK5 BPY . . . D 3 0.919 -21.238 -4.768 0.7 53.58 ? CK5 BPY 1278 A 1 
HETATM 6 C CK6 BPY . . . D 3 0.248 -22.437 -4.646 0.7 53.68 ? CK6 BPY 1278 A 1 
HETATM 7 C CK7 BPY . . . D 3 -3.176 -21.32 -3.733 0.7 53.91 ? CK7 BPY 1278 A 1 
HETATM 8 C CK8 BPY . . . D 3 -3.792 -22.582 -3.615 0.7 53.46 ? CK8 BPY 1278 A 1 
HETATM 9 C CK9 BPY . . . D 3 -5.131 -22.7 -3.268 0.7 53.53 ? CK9 BPY 1278 A 1 
HETATM 10 C CKA BPY . . . D 3 -5.893 -21.552 -3.024 0.7 53.9 ? CKA BPY 1278 A 1 
HETATM 11 C CKB BPY . . . D 3 -5.307 -20.293 -3.143 0.7 53.72 ? CKB BPY 1278 A 1 
HETATM 12 C CKC BPY . . . D 3 -3.953 -20.179 -3.491 0.7 53.91 ? CKC BPY 1278 A 1 
HETATM 13 O OK1 BPY . . . D 3 0.906 -18.898 -4.686 0.7 53.29 ? OK1 BPY 1278 A 1 
HETATM 14 O OK2 BPY . . . D 3 -1.727 -18.858 -3.994 0.7 54.12 ? OK2 BPY 1278 A 1 
#
_model_server_stats.io_time_ms              74 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           263 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           14 
#