data_3ZV9 # _model_server_result.job_id a2HF4Fafmmu8N1zQJE_FHA _model_server_result.datetime_utc '2024-10-12 08:30:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3zv9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1190}' # _entry.id 3ZV9 # _exptl.entry_id 3ZV9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 328.404 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ETHYL (4R)-4-[(TERT-BUTOXYCARBONYL)AMINO]-5-[(3S)-2-OXOPYRROLIDIN-3-YL]PENTANOATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3ZV9 _cell.length_a 55.99 _cell.length_b 55.99 _cell.length_c 170.551 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3ZV9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 -x,-x+y,-z+1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 56.850333 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 147 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 147 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C63 _struct_conn.ptnr2_label_comp_id G74 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id G74 _struct_conn.ptnr2_auth_seq_id 1190 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.816 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C16 H28 N2 O5' _chem_comp.formula_weight 328.404 _chem_comp.id G74 _chem_comp.mon_nstd_flag . _chem_comp.name 'ETHYL (4R)-4-[(TERT-BUTOXYCARBONYL)AMINO]-5-[(3S)-2-OXOPYRROLIDIN-3-YL]PENTANOATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O88 C84 G74 doub 83 n n C84 O86 G74 sing 84 n n C84 C82 G74 sing 85 n n O86 C3 G74 sing 86 n n C3 C5 G74 sing 87 n n C82 C63 G74 sing 88 n n C63 C57 G74 sing 89 n n C57 C59 G74 sing 90 n n C57 N49 G74 sing 91 n n C59 C61 G74 sing 92 n n C61 C73 G74 sing 93 n n C61 C65 G74 sing 94 n n C73 C71 G74 sing 95 n n C71 N69 G74 sing 96 n n N69 C65 G74 sing 97 n n C65 O66 G74 doub 98 n n N49 C39 G74 sing 99 n n C39 O47 G74 doub 100 n n C39 O37 G74 sing 101 n n O37 C1 G74 sing 102 n n C1 C2 G74 sing 103 n n C1 C4 G74 sing 104 n n C1 C6 G74 sing 105 n n C82 H821 G74 sing 106 n n C82 H822 G74 sing 107 n n C3 H31C G74 sing 108 n n C3 H32C G74 sing 109 n n C5 H51C G74 sing 110 n n C5 H52C G74 sing 111 n n C5 H53C G74 sing 112 n n C63 H631 G74 sing 113 n n C63 H632 G74 sing 114 n n C57 H57 G74 sing 115 n n C59 H591 G74 sing 116 n n C59 H592 G74 sing 117 n n N49 H49 G74 sing 118 n n C61 H61 G74 sing 119 n n C73 H731 G74 sing 120 n n C73 H732 G74 sing 121 n n C71 H711 G74 sing 122 n n C71 H712 G74 sing 123 n n N69 H69 G74 sing 124 n n C2 H21C G74 sing 125 n n C2 H22C G74 sing 126 n n C2 H23C G74 sing 127 n n C4 H41C G74 sing 128 n n C4 H42C G74 sing 129 n n C4 H43C G74 sing 130 n n C6 H61C G74 sing 131 n n C6 H62C G74 sing 132 n n C6 H63C G74 sing 133 n n # _atom_sites.entry_id 3ZV9 _atom_sites.fract_transf_matrix[1][1] 0.01786 _atom_sites.fract_transf_matrix[1][2] 0.010312 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020623 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005863 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 G74 A 1 1190 1190 G74 G74 . C 3 HOH A 1 2001 2001 HOH HOH . C 3 HOH A 2 2002 2002 HOH HOH . C 3 HOH A 3 2003 2003 HOH HOH . C 3 HOH A 4 2004 2004 HOH HOH . C 3 HOH A 5 2005 2005 HOH HOH . C 3 HOH A 6 2006 2006 HOH HOH . C 3 HOH A 7 2007 2007 HOH HOH . C 3 HOH A 8 2008 2008 HOH HOH . C 3 HOH A 9 2009 2009 HOH HOH . C 3 HOH A 10 2010 2010 HOH HOH . C 3 HOH A 11 2011 2011 HOH HOH . C 3 HOH A 12 2012 2012 HOH HOH . C 3 HOH A 13 2013 2013 HOH HOH . C 3 HOH A 14 2014 2014 HOH HOH . C 3 HOH A 15 2015 2015 HOH HOH . C 3 HOH A 16 2016 2016 HOH HOH . C 3 HOH A 17 2017 2017 HOH HOH . C 3 HOH A 18 2018 2018 HOH HOH . C 3 HOH A 19 2019 2019 HOH HOH . C 3 HOH A 20 2020 2020 HOH HOH . C 3 HOH A 21 2021 2021 HOH HOH . C 3 HOH A 22 2022 2022 HOH HOH . C 3 HOH A 23 2023 2023 HOH HOH . C 3 HOH A 24 2024 2024 HOH HOH . C 3 HOH A 25 2025 2025 HOH HOH . C 3 HOH A 26 2026 2026 HOH HOH . C 3 HOH A 27 2027 2027 HOH HOH . C 3 HOH A 28 2028 2028 HOH HOH . C 3 HOH A 29 2029 2029 HOH HOH . C 3 HOH A 30 2030 2030 HOH HOH . C 3 HOH A 31 2031 2031 HOH HOH . C 3 HOH A 32 2032 2032 HOH HOH . C 3 HOH A 33 2033 2033 HOH HOH . C 3 HOH A 34 2034 2034 HOH HOH . C 3 HOH A 35 2035 2035 HOH HOH . C 3 HOH A 36 2036 2036 HOH HOH . C 3 HOH A 37 2037 2037 HOH HOH . C 3 HOH A 38 2038 2038 HOH HOH . C 3 HOH A 39 2039 2039 HOH HOH . C 3 HOH A 40 2040 2040 HOH HOH . C 3 HOH A 41 2041 2041 HOH HOH . C 3 HOH A 42 2042 2042 HOH HOH . C 3 HOH A 43 2043 2043 HOH HOH . C 3 HOH A 44 2044 2044 HOH HOH . C 3 HOH A 45 2045 2045 HOH HOH . C 3 HOH A 46 2046 2046 HOH HOH . C 3 HOH A 47 2047 2047 HOH HOH . C 3 HOH A 48 2048 2048 HOH HOH . C 3 HOH A 49 2049 2049 HOH HOH . C 3 HOH A 50 2050 2050 HOH HOH . C 3 HOH A 51 2051 2051 HOH HOH . C 3 HOH A 52 2052 2052 HOH HOH . C 3 HOH A 53 2053 2053 HOH HOH . C 3 HOH A 54 2054 2054 HOH HOH . C 3 HOH A 55 2055 2055 HOH HOH . C 3 HOH A 56 2056 2056 HOH HOH . C 3 HOH A 57 2057 2057 HOH HOH . C 3 HOH A 58 2058 2058 HOH HOH . C 3 HOH A 59 2059 2059 HOH HOH . C 3 HOH A 60 2060 2060 HOH HOH . C 3 HOH A 61 2061 2061 HOH HOH . C 3 HOH A 62 2062 2062 HOH HOH . C 3 HOH A 63 2063 2063 HOH HOH . C 3 HOH A 64 2064 2064 HOH HOH . C 3 HOH A 65 2065 2065 HOH HOH . C 3 HOH A 66 2066 2066 HOH HOH . C 3 HOH A 67 2067 2067 HOH HOH . C 3 HOH A 68 2068 2068 HOH HOH . C 3 HOH A 69 2069 2069 HOH HOH . C 3 HOH A 70 2070 2070 HOH HOH . C 3 HOH A 71 2071 2071 HOH HOH . C 3 HOH A 72 2072 2072 HOH HOH . C 3 HOH A 73 2073 2073 HOH HOH . C 3 HOH A 74 2074 2074 HOH HOH . C 3 HOH A 75 2075 2075 HOH HOH . C 3 HOH A 76 2076 2076 HOH HOH . C 3 HOH A 77 2077 2077 HOH HOH . C 3 HOH A 78 2078 2078 HOH HOH . C 3 HOH A 79 2079 2079 HOH HOH . C 3 HOH A 80 2080 2080 HOH HOH . C 3 HOH A 81 2081 2081 HOH HOH . C 3 HOH A 82 2082 2082 HOH HOH . C 3 HOH A 83 2083 2083 HOH HOH . C 3 HOH A 84 2084 2084 HOH HOH . C 3 HOH A 85 2085 2085 HOH HOH . C 3 HOH A 86 2086 2086 HOH HOH . C 3 HOH A 87 2087 2087 HOH HOH . C 3 HOH A 88 2088 2088 HOH HOH . C 3 HOH A 89 2089 2089 HOH HOH . C 3 HOH A 90 2090 2090 HOH HOH . C 3 HOH A 91 2091 2091 HOH HOH . C 3 HOH A 92 2092 2092 HOH HOH . C 3 HOH A 93 2093 2093 HOH HOH . C 3 HOH A 94 2094 2094 HOH HOH . C 3 HOH A 95 2095 2095 HOH HOH . C 3 HOH A 96 2096 2096 HOH HOH . C 3 HOH A 97 2097 2097 HOH HOH . C 3 HOH A 98 2098 2098 HOH HOH . C 3 HOH A 99 2099 2099 HOH HOH . C 3 HOH A 100 2100 2100 HOH HOH . C 3 HOH A 101 2101 2101 HOH HOH . C 3 HOH A 102 2102 2102 HOH HOH . C 3 HOH A 103 2103 2103 HOH HOH . C 3 HOH A 104 2104 2104 HOH HOH . C 3 HOH A 105 2105 2105 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O88 G74 . . . B 2 -5.56 11.831 18.196 1 48.62 ? O88 G74 1190 A 1 HETATM 2 C C84 G74 . . . B 2 -5.692 11.686 16.965 1 46.65 ? C84 G74 1190 A 1 HETATM 3 O O86 G74 . . . B 2 -5.259 10.432 16.338 1 48.81 ? O86 G74 1190 A 1 HETATM 4 C C3 G74 . . . B 2 -4.522 9.421 17.07 1 52.74 ? C3 G74 1190 A 1 HETATM 5 C C5 G74 . . . B 2 -3.242 9.002 16.352 1 53.07 ? C5 G74 1190 A 1 HETATM 6 C C82 G74 . . . B 2 -6.292 12.78 16.075 1 40.46 ? C82 G74 1190 A 1 HETATM 7 C C63 G74 . . . B 2 -5.995 14.207 16.535 1 30.16 ? C63 G74 1190 A 1 HETATM 8 C C57 G74 . . . B 2 -4.488 14.469 16.73 1 30.07 ? C57 G74 1190 A 1 HETATM 9 C C59 G74 . . . B 2 -4.225 15.782 17.472 1 27.31 ? C59 G74 1190 A 1 HETATM 10 C C61 G74 . . . B 2 -2.737 16.012 17.819 1 30.06 ? C61 G74 1190 A 1 HETATM 11 C C73 G74 . . . B 2 -2.013 14.804 18.46 1 31.62 ? C73 G74 1190 A 1 HETATM 12 C C71 G74 . . . B 2 -0.979 15.405 19.439 1 33.04 ? C71 G74 1190 A 1 HETATM 13 N N69 G74 . . . B 2 -1.563 16.737 19.64 1 31.29 ? N69 G74 1190 A 1 HETATM 14 C C65 G74 . . . B 2 -2.499 17.085 18.86 1 30.62 ? C65 G74 1190 A 1 HETATM 15 O O66 G74 . . . B 2 -3.156 18.246 18.972 1 31.42 ? O66 G74 1190 A 1 HETATM 16 N N49 G74 . . . B 2 -3.898 14.566 15.39 1 30.1 ? N49 G74 1190 A 1 HETATM 17 C C39 G74 . . . B 2 -3.046 13.641 14.94 1 30.23 ? C39 G74 1190 A 1 HETATM 18 O O47 G74 . . . B 2 -2.695 12.69 15.617 1 30.62 ? O47 G74 1190 A 1 HETATM 19 O O37 G74 . . . B 2 -2.507 13.764 13.599 1 31.33 ? O37 G74 1190 A 1 HETATM 20 C C1 G74 . . . B 2 -1.937 12.692 12.854 1 32.7 ? C1 G74 1190 A 1 HETATM 21 C C2 G74 . . . B 2 -1.629 13.296 11.478 1 31.55 ? C2 G74 1190 A 1 HETATM 22 C C4 G74 . . . B 2 -2.971 11.557 12.712 1 31.72 ? C4 G74 1190 A 1 HETATM 23 C C6 G74 . . . B 2 -0.625 12.226 13.529 1 29.8 ? C6 G74 1190 A 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 23 #