data_3ZVA # _model_server_result.job_id IVpPvUY7_i78bMqQo83O9w _model_server_result.datetime_utc '2024-10-12 08:27:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3zva # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1190}' # _entry.id 3ZVA # _exptl.entry_id 3ZVA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 509.594 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ETHYL (4R)-4-({N-[(BENZYLOXY)CARBONYL]-L-PHENYLALANYL}AMINO)-5-[(3S)-2-OXOPYRROLIDIN-3-YL]PENTANOATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3ZVA _cell.length_a 56.1 _cell.length_b 56.1 _cell.length_c 170.411 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3ZVA _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_554 x-y,-y,-z-1/3 1 0 0 0 -1 0 0 0 -1 0 0 -56.803667 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 147 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 147 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C63 _struct_conn.ptnr2_label_comp_id G75 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id G75 _struct_conn.ptnr2_auth_seq_id 1190 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.808 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C28 H35 N3 O6' _chem_comp.formula_weight 509.594 _chem_comp.id G75 _chem_comp.mon_nstd_flag . _chem_comp.name 'ETHYL (4R)-4-({N-[(BENZYLOXY)CARBONYL]-L-PHENYLALANYL}AMINO)-5-[(3S)-2-OXOPYRROLIDIN-3-YL]PENTANOATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O88 C84 G75 doub 83 n n C84 O86 G75 sing 84 n n C84 C82 G75 sing 85 n n O86 C3 G75 sing 86 n n C3 C5 G75 sing 87 n n C82 C63 G75 sing 88 n n C63 C57 G75 sing 89 n n C57 C59 G75 sing 90 n n C57 N49 G75 sing 91 n n C59 C61 G75 sing 92 n n C61 C65 G75 sing 93 n n C61 C73 G75 sing 94 n n C65 O66 G75 doub 95 n n C65 N69 G75 sing 96 n n N69 C71 G75 sing 97 n n C71 C73 G75 sing 98 n n N49 C39 G75 sing 99 n n C39 O47 G75 doub 100 n n C39 C37 G75 sing 101 n n C37 C41 G75 sing 102 n n C37 N33 G75 sing 103 n n C41 C51 G75 sing 104 n n C51 C55 G75 sing 105 n y C51 C53 G75 doub 106 n y C55 C11 G75 doub 107 n y C11 C9 G75 sing 108 n y C9 C7 G75 doub 109 n y C7 C53 G75 sing 110 n y N33 C31 G75 sing 111 n n C31 O35 G75 doub 112 n n C31 O1 G75 sing 113 n n O1 C1 G75 sing 114 n n C1 C2 G75 sing 115 n n C2 C4 G75 sing 116 n y C2 C10 G75 doub 117 n y C4 C6 G75 doub 118 n y C6 C8 G75 sing 119 n y C8 C12 G75 doub 120 n y C12 C10 G75 sing 121 n y C82 H821 G75 sing 122 n n C82 H822 G75 sing 123 n n C3 H31C G75 sing 124 n n C3 H32C G75 sing 125 n n C5 H51C G75 sing 126 n n C5 H52C G75 sing 127 n n C5 H53C G75 sing 128 n n C63 H631 G75 sing 129 n n C63 H632 G75 sing 130 n n C57 H57 G75 sing 131 n n C59 H591 G75 sing 132 n n C59 H592 G75 sing 133 n n N49 H49 G75 sing 134 n n C61 H61 G75 sing 135 n n C73 H731 G75 sing 136 n n C73 H732 G75 sing 137 n n N69 H69 G75 sing 138 n n C71 H711 G75 sing 139 n n C71 H712 G75 sing 140 n n C37 H37 G75 sing 141 n n C41 H411 G75 sing 142 n n C41 H412 G75 sing 143 n n N33 H33 G75 sing 144 n n C55 H55 G75 sing 145 n n C53 H53 G75 sing 146 n n C11 H11 G75 sing 147 n n C9 H9 G75 sing 148 n n C7 H7 G75 sing 149 n n C1 H11C G75 sing 150 n n C1 H12C G75 sing 151 n n C4 H4 G75 sing 152 n n C10 H10 G75 sing 153 n n C6 H6 G75 sing 154 n n C8 H8 G75 sing 155 n n C12 H12 G75 sing 156 n n # _atom_sites.entry_id 3ZVA _atom_sites.fract_transf_matrix[1][1] 0.017825 _atom_sites.fract_transf_matrix[1][2] 0.010291 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020583 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005868 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 G75 A 1 1190 1190 G75 G75 . C 3 HOH A 1 2001 2001 HOH HOH . C 3 HOH A 2 2002 2002 HOH HOH . C 3 HOH A 3 2003 2003 HOH HOH . C 3 HOH A 4 2004 2004 HOH HOH . C 3 HOH A 5 2005 2005 HOH HOH . C 3 HOH A 6 2006 2006 HOH HOH . C 3 HOH A 7 2007 2007 HOH HOH . C 3 HOH A 8 2008 2008 HOH HOH . C 3 HOH A 9 2009 2009 HOH HOH . C 3 HOH A 10 2010 2010 HOH HOH . C 3 HOH A 11 2011 2011 HOH HOH . C 3 HOH A 12 2012 2012 HOH HOH . C 3 HOH A 13 2013 2013 HOH HOH . C 3 HOH A 14 2014 2014 HOH HOH . C 3 HOH A 15 2015 2015 HOH HOH . C 3 HOH A 16 2016 2016 HOH HOH . C 3 HOH A 17 2017 2017 HOH HOH . C 3 HOH A 18 2018 2018 HOH HOH . C 3 HOH A 19 2019 2019 HOH HOH . C 3 HOH A 20 2020 2020 HOH HOH . C 3 HOH A 21 2021 2021 HOH HOH . C 3 HOH A 22 2022 2022 HOH HOH . C 3 HOH A 23 2023 2023 HOH HOH . C 3 HOH A 24 2024 2024 HOH HOH . C 3 HOH A 25 2025 2025 HOH HOH . C 3 HOH A 26 2026 2026 HOH HOH . C 3 HOH A 27 2027 2027 HOH HOH . C 3 HOH A 28 2028 2028 HOH HOH . C 3 HOH A 29 2029 2029 HOH HOH . C 3 HOH A 30 2030 2030 HOH HOH . C 3 HOH A 31 2031 2031 HOH HOH . C 3 HOH A 32 2032 2032 HOH HOH . C 3 HOH A 33 2033 2033 HOH HOH . C 3 HOH A 34 2034 2034 HOH HOH . C 3 HOH A 35 2035 2035 HOH HOH . C 3 HOH A 36 2036 2036 HOH HOH . C 3 HOH A 37 2037 2037 HOH HOH . C 3 HOH A 38 2038 2038 HOH HOH . C 3 HOH A 39 2039 2039 HOH HOH . C 3 HOH A 40 2040 2040 HOH HOH . C 3 HOH A 41 2041 2041 HOH HOH . C 3 HOH A 42 2042 2042 HOH HOH . C 3 HOH A 43 2043 2043 HOH HOH . C 3 HOH A 44 2044 2044 HOH HOH . C 3 HOH A 45 2045 2045 HOH HOH . C 3 HOH A 46 2046 2046 HOH HOH . C 3 HOH A 47 2047 2047 HOH HOH . C 3 HOH A 48 2048 2048 HOH HOH . C 3 HOH A 49 2049 2049 HOH HOH . C 3 HOH A 50 2050 2050 HOH HOH . C 3 HOH A 51 2051 2051 HOH HOH . C 3 HOH A 52 2052 2052 HOH HOH . C 3 HOH A 53 2053 2053 HOH HOH . C 3 HOH A 54 2054 2054 HOH HOH . C 3 HOH A 55 2055 2055 HOH HOH . C 3 HOH A 56 2056 2056 HOH HOH . C 3 HOH A 57 2057 2057 HOH HOH . C 3 HOH A 58 2058 2058 HOH HOH . C 3 HOH A 59 2059 2059 HOH HOH . C 3 HOH A 60 2060 2060 HOH HOH . C 3 HOH A 61 2061 2061 HOH HOH . C 3 HOH A 62 2062 2062 HOH HOH . C 3 HOH A 63 2063 2063 HOH HOH . C 3 HOH A 64 2064 2064 HOH HOH . C 3 HOH A 65 2065 2065 HOH HOH . C 3 HOH A 66 2066 2066 HOH HOH . C 3 HOH A 67 2067 2067 HOH HOH . C 3 HOH A 68 2068 2068 HOH HOH . C 3 HOH A 69 2069 2069 HOH HOH . C 3 HOH A 70 2070 2070 HOH HOH . C 3 HOH A 71 2071 2071 HOH HOH . C 3 HOH A 72 2072 2072 HOH HOH . C 3 HOH A 73 2073 2073 HOH HOH . C 3 HOH A 74 2074 2074 HOH HOH . C 3 HOH A 75 2075 2075 HOH HOH . C 3 HOH A 76 2076 2076 HOH HOH . C 3 HOH A 77 2077 2077 HOH HOH . C 3 HOH A 78 2078 2078 HOH HOH . C 3 HOH A 79 2079 2079 HOH HOH . C 3 HOH A 80 2080 2080 HOH HOH . C 3 HOH A 81 2081 2081 HOH HOH . C 3 HOH A 82 2082 2082 HOH HOH . C 3 HOH A 83 2083 2083 HOH HOH . C 3 HOH A 84 2084 2084 HOH HOH . C 3 HOH A 85 2085 2085 HOH HOH . C 3 HOH A 86 2086 2086 HOH HOH . C 3 HOH A 87 2087 2087 HOH HOH . C 3 HOH A 88 2088 2088 HOH HOH . C 3 HOH A 89 2089 2089 HOH HOH . C 3 HOH A 90 2090 2090 HOH HOH . C 3 HOH A 91 2091 2091 HOH HOH . C 3 HOH A 92 2092 2092 HOH HOH . C 3 HOH A 93 2093 2093 HOH HOH . C 3 HOH A 94 2094 2094 HOH HOH . C 3 HOH A 95 2095 2095 HOH HOH . C 3 HOH A 96 2096 2096 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O88 G75 . . . B 2 -13.19 -1.226 -18.125 1 47.68 ? O88 G75 1190 A 1 HETATM 2 C C84 G75 . . . B 2 -13.228 -0.838 -16.954 1 45.37 ? C84 G75 1190 A 1 HETATM 3 O O86 G75 . . . B 2 -12.059 -0.108 -16.48 1 48.37 ? O86 G75 1190 A 1 HETATM 4 C C3 G75 . . . B 2 -12.021 1.35 -16.42 1 50.56 ? C3 G75 1190 A 1 HETATM 5 C C5 G75 . . . B 2 -13.197 2.087 -17.073 1 45.23 ? C5 G75 1190 A 1 HETATM 6 C C82 G75 . . . B 2 -14.416 -1.073 -16.006 1 39.52 ? C82 G75 1190 A 1 HETATM 7 C C63 G75 . . . B 2 -15.512 -2.025 -16.496 1 30.29 ? C63 G75 1190 A 1 HETATM 8 C C57 G75 . . . B 2 -15.013 -3.461 -16.73 1 28.95 ? C57 G75 1190 A 1 HETATM 9 C C59 G75 . . . B 2 -15.958 -4.325 -17.595 1 26.33 ? C59 G75 1190 A 1 HETATM 10 C C61 G75 . . . B 2 -15.428 -5.729 -17.964 1 27.76 ? C61 G75 1190 A 1 HETATM 11 C C65 G75 . . . B 2 -16.295 -6.454 -18.962 1 28.01 ? C65 G75 1190 A 1 HETATM 12 O O66 G75 . . . B 2 -17.633 -6.429 -18.969 1 26.88 ? O66 G75 1190 A 1 HETATM 13 N N69 G75 . . . B 2 -15.575 -7.091 -19.785 1 28.8 ? N69 G75 1190 A 1 HETATM 14 C C71 G75 . . . B 2 -14.113 -6.98 -19.636 1 28.74 ? C71 G75 1190 A 1 HETATM 15 C C73 G75 . . . B 2 -14.059 -5.777 -18.672 1 28.73 ? C73 G75 1190 A 1 HETATM 16 N N49 G75 . . . B 2 -14.884 -4.074 -15.402 1 28.77 ? N49 G75 1190 A 1 HETATM 17 C C39 G75 . . . B 2 -13.699 -4.533 -14.981 1 30.7 ? C39 G75 1190 A 1 HETATM 18 O O47 G75 . . . B 2 -12.701 -4.485 -15.696 1 31.19 ? O47 G75 1190 A 1 HETATM 19 C C37 G75 . . . B 2 -13.614 -5.161 -13.604 1 31.27 ? C37 G75 1190 A 1 HETATM 20 C C41 G75 . . . B 2 -12.84 -4.289 -12.594 1 33.07 ? C41 G75 1190 A 1 HETATM 21 C C51 G75 . . . B 2 -13.515 -2.933 -12.464 1 36.23 ? C51 G75 1190 A 1 HETATM 22 C C55 G75 . . . B 2 -12.775 -1.766 -12.712 1 37.57 ? C55 G75 1190 A 1 HETATM 23 C C11 G75 . . . B 2 -13.395 -0.519 -12.593 1 37.93 ? C11 G75 1190 A 1 HETATM 24 C C9 G75 . . . B 2 -14.751 -0.448 -12.23 1 37.39 ? C9 G75 1190 A 1 HETATM 25 C C7 G75 . . . B 2 -15.512 -1.602 -11.976 1 36.04 ? C7 G75 1190 A 1 HETATM 26 C C53 G75 . . . B 2 -14.882 -2.838 -12.088 1 36.14 ? C53 G75 1190 A 1 HETATM 27 N N33 G75 . . . B 2 -12.855 -6.399 -13.683 1 31.72 ? N33 G75 1190 A 1 HETATM 28 C C31 G75 . . . B 2 -13.203 -7.436 -14.422 1 31.36 ? C31 G75 1190 A 1 HETATM 29 O O35 G75 . . . B 2 -14.225 -7.479 -15.073 1 32.62 ? O35 G75 1190 A 1 HETATM 30 O O1 G75 . . . B 2 -12.354 -8.605 -14.426 1 36.27 ? O1 G75 1190 A 1 HETATM 31 C C1 G75 . . . B 2 -12.607 -9.739 -15.278 1 39.25 ? C1 G75 1190 A 1 HETATM 32 C C2 G75 . . . B 2 -13.385 -10.846 -14.572 1 40.91 ? C2 G75 1190 A 1 HETATM 33 C C4 G75 . . . B 2 -12.781 -12.079 -14.319 1 44.15 ? C4 G75 1190 A 1 HETATM 34 C C6 G75 . . . B 2 -13.489 -13.113 -13.678 1 44.72 ? C6 G75 1190 A 1 HETATM 35 C C8 G75 . . . B 2 -14.815 -12.922 -13.298 1 42.22 ? C8 G75 1190 A 1 HETATM 36 C C12 G75 . . . B 2 -15.415 -11.69 -13.553 1 41.02 ? C12 G75 1190 A 1 HETATM 37 C C10 G75 . . . B 2 -14.71 -10.67 -14.187 1 40.22 ? C10 G75 1190 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 37 #