data_3ZVB # _model_server_result.job_id JdWhcRh5AP6b0y_C94_73A _model_server_result.datetime_utc '2024-10-12 08:22:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3zvb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1190}' # _entry.id 3ZVB # _exptl.entry_id 3ZVB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 475.578 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ETHYL (4R)-4-{[N-(TERT-BUTOXYCARBONYL)-L-PHENYLALANYL]AMINO}-5-[(3S)-2-OXOPYRROLIDIN-3-YL]PENTANOATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3ZVB _cell.length_a 56.32 _cell.length_b 56.32 _cell.length_c 170.341 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3ZVB _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 147 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 147 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C63 _struct_conn.ptnr2_label_comp_id G81 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id G81 _struct_conn.ptnr2_auth_seq_id 1190 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.792 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C25 H37 N3 O6' _chem_comp.formula_weight 475.578 _chem_comp.id G81 _chem_comp.mon_nstd_flag . _chem_comp.name 'ETHYL (4R)-4-{[N-(TERT-BUTOXYCARBONYL)-L-PHENYLALANYL]AMINO}-5-[(3S)-2-OXOPYRROLIDIN-3-YL]PENTANOATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O35 C31 G81 doub 83 n n C31 O1 G81 sing 84 n n C31 N33 G81 sing 85 n n O1 C1 G81 sing 86 n n C1 C2 G81 sing 87 n n C1 C4 G81 sing 88 n n C1 C6 G81 sing 89 n n N33 C37 G81 sing 90 n n C37 C41 G81 sing 91 n n C37 C39 G81 sing 92 n n C41 C51 G81 sing 93 n n C51 C53 G81 sing 94 n y C51 C55 G81 doub 95 n y C53 C7 G81 doub 96 n y C7 C9 G81 sing 97 n y C9 C11 G81 doub 98 n y C11 C55 G81 sing 99 n y C39 O47 G81 doub 100 n n C39 N49 G81 sing 101 n n N49 C57 G81 sing 102 n n C57 C59 G81 sing 103 n n C57 C63 G81 sing 104 n n C59 C61 G81 sing 105 n n C61 C73 G81 sing 106 n n C61 C65 G81 sing 107 n n C73 C71 G81 sing 108 n n C71 N69 G81 sing 109 n n N69 C65 G81 sing 110 n n C65 O66 G81 doub 111 n n C63 C82 G81 sing 112 n n C82 C84 G81 sing 113 n n C84 O88 G81 doub 114 n n C84 O86 G81 sing 115 n n O86 C3 G81 sing 116 n n C3 C5 G81 sing 117 n n N33 H33 G81 sing 118 n n C2 H21C G81 sing 119 n n C2 H22C G81 sing 120 n n C2 H23C G81 sing 121 n n C4 H41C G81 sing 122 n n C4 H42C G81 sing 123 n n C4 H43C G81 sing 124 n n C6 H61C G81 sing 125 n n C6 H62C G81 sing 126 n n C6 H63C G81 sing 127 n n C37 H37 G81 sing 128 n n C41 H411 G81 sing 129 n n C41 H412 G81 sing 130 n n C53 H53 G81 sing 131 n n C55 H55 G81 sing 132 n n C7 H7 G81 sing 133 n n C9 H9 G81 sing 134 n n C11 H11 G81 sing 135 n n N49 H49 G81 sing 136 n n C57 H57 G81 sing 137 n n C59 H591 G81 sing 138 n n C59 H592 G81 sing 139 n n C63 H631 G81 sing 140 n n C63 H632 G81 sing 141 n n C61 H61 G81 sing 142 n n C73 H731 G81 sing 143 n n C73 H732 G81 sing 144 n n C71 H711 G81 sing 145 n n C71 H712 G81 sing 146 n n N69 H69 G81 sing 147 n n C82 H821 G81 sing 148 n n C82 H822 G81 sing 149 n n C3 H31C G81 sing 150 n n C3 H32C G81 sing 151 n n C5 H51C G81 sing 152 n n C5 H52C G81 sing 153 n n C5 H53C G81 sing 154 n n # _atom_sites.entry_id 3ZVB _atom_sites.fract_transf_matrix[1][1] 0.017756 _atom_sites.fract_transf_matrix[1][2] 0.010251 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020502 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005871 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 G81 A 1 1190 1190 G81 G81 . C 3 HOH A 1 2001 2001 HOH HOH . C 3 HOH A 2 2002 2002 HOH HOH . C 3 HOH A 3 2003 2003 HOH HOH . C 3 HOH A 4 2004 2004 HOH HOH . C 3 HOH A 5 2005 2005 HOH HOH . C 3 HOH A 6 2006 2006 HOH HOH . C 3 HOH A 7 2007 2007 HOH HOH . C 3 HOH A 8 2008 2008 HOH HOH . C 3 HOH A 9 2009 2009 HOH HOH . C 3 HOH A 10 2010 2010 HOH HOH . C 3 HOH A 11 2011 2011 HOH HOH . C 3 HOH A 12 2012 2012 HOH HOH . C 3 HOH A 13 2013 2013 HOH HOH . C 3 HOH A 14 2014 2014 HOH HOH . C 3 HOH A 15 2015 2015 HOH HOH . C 3 HOH A 16 2016 2016 HOH HOH . C 3 HOH A 17 2017 2017 HOH HOH . C 3 HOH A 18 2018 2018 HOH HOH . C 3 HOH A 19 2019 2019 HOH HOH . C 3 HOH A 20 2020 2020 HOH HOH . C 3 HOH A 21 2021 2021 HOH HOH . C 3 HOH A 22 2022 2022 HOH HOH . C 3 HOH A 23 2023 2023 HOH HOH . C 3 HOH A 24 2024 2024 HOH HOH . C 3 HOH A 25 2025 2025 HOH HOH . C 3 HOH A 26 2026 2026 HOH HOH . C 3 HOH A 27 2027 2027 HOH HOH . C 3 HOH A 28 2028 2028 HOH HOH . C 3 HOH A 29 2029 2029 HOH HOH . C 3 HOH A 30 2030 2030 HOH HOH . C 3 HOH A 31 2031 2031 HOH HOH . C 3 HOH A 32 2032 2032 HOH HOH . C 3 HOH A 33 2033 2033 HOH HOH . C 3 HOH A 34 2034 2034 HOH HOH . C 3 HOH A 35 2035 2035 HOH HOH . C 3 HOH A 36 2036 2036 HOH HOH . C 3 HOH A 37 2037 2037 HOH HOH . C 3 HOH A 38 2038 2038 HOH HOH . C 3 HOH A 39 2039 2039 HOH HOH . C 3 HOH A 40 2040 2040 HOH HOH . C 3 HOH A 41 2041 2041 HOH HOH . C 3 HOH A 42 2042 2042 HOH HOH . C 3 HOH A 43 2043 2043 HOH HOH . C 3 HOH A 44 2044 2044 HOH HOH . C 3 HOH A 45 2045 2045 HOH HOH . C 3 HOH A 46 2046 2046 HOH HOH . C 3 HOH A 47 2047 2047 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O35 G81 . . . B 2 -14.165 -8.683 -13.804 1 35.55 ? O35 G81 1190 A 1 HETATM 2 C C31 G81 . . . B 2 -13.682 -7.855 -14.513 1 31.23 ? C31 G81 1190 A 1 HETATM 3 O O1 G81 . . . B 2 -14.415 -6.631 -14.716 1 34.92 ? O1 G81 1190 A 1 HETATM 4 C C1 G81 . . . B 2 -15.779 -6.386 -14.317 1 31.9 ? C1 G81 1190 A 1 HETATM 5 C C2 G81 . . . B 2 -16.414 -5.3 -15.203 1 30.33 ? C2 G81 1190 A 1 HETATM 6 C C4 G81 . . . B 2 -15.591 -5.889 -12.882 1 28.75 ? C4 G81 1190 A 1 HETATM 7 C C6 G81 . . . B 2 -16.676 -7.614 -14.494 1 28.21 ? C6 G81 1190 A 1 HETATM 8 N N33 G81 . . . B 2 -12.525 -8.023 -15.086 1 31.44 ? N33 G81 1190 A 1 HETATM 9 C C37 G81 . . . B 2 -11.778 -9.259 -14.964 1 31.84 ? C37 G81 1190 A 1 HETATM 10 C C41 G81 . . . B 2 -10.623 -8.94 -15.928 1 34.61 ? C41 G81 1190 A 1 HETATM 11 C C51 G81 . . . B 2 -9.632 -10.084 -16.046 1 39.37 ? C51 G81 1190 A 1 HETATM 12 C C53 G81 . . . B 2 -8.247 -9.808 -16.049 1 38.02 ? C53 G81 1190 A 1 HETATM 13 C C7 G81 . . . B 2 -7.371 -10.886 -16.157 1 37.18 ? C7 G81 1190 A 1 HETATM 14 C C9 G81 . . . B 2 -7.838 -12.212 -16.259 1 37.91 ? C9 G81 1190 A 1 HETATM 15 C C11 G81 . . . B 2 -9.211 -12.509 -16.277 1 38.02 ? C11 G81 1190 A 1 HETATM 16 C C55 G81 . . . B 2 -10.1 -11.431 -16.176 1 40.01 ? C55 G81 1190 A 1 HETATM 17 C C39 G81 . . . B 2 -11.317 -9.6 -13.574 1 32.74 ? C39 G81 1190 A 1 HETATM 18 O O47 G81 . . . B 2 -10.902 -8.697 -12.867 1 34.76 ? O47 G81 1190 A 1 HETATM 19 N N49 G81 . . . B 2 -11.369 -10.884 -13.135 1 32.34 ? N49 G81 1190 A 1 HETATM 20 C C57 G81 . . . B 2 -10.882 -11.26 -11.786 1 30.14 ? C57 G81 1190 A 1 HETATM 21 C C59 G81 . . . B 2 -12.009 -11.747 -10.894 1 28.49 ? C59 G81 1190 A 1 HETATM 22 C C61 G81 . . . B 2 -12.952 -10.594 -10.549 1 28.26 ? C61 G81 1190 A 1 HETATM 23 C C73 G81 . . . B 2 -12.205 -9.395 -9.941 1 28.31 ? C73 G81 1190 A 1 HETATM 24 C C71 G81 . . . B 2 -13.088 -8.821 -8.827 1 29.44 ? C71 G81 1190 A 1 HETATM 25 N N69 G81 . . . B 2 -13.993 -9.953 -8.614 1 29.92 ? N69 G81 1190 A 1 HETATM 26 C C65 G81 . . . B 2 -13.962 -10.966 -9.495 1 28.51 ? C65 G81 1190 A 1 HETATM 27 O O66 G81 . . . B 2 -14.622 -12.018 -9.459 1 24.01 ? O66 G81 1190 A 1 HETATM 28 C C63 G81 . . . B 2 -9.855 -12.346 -11.976 1 31.64 ? C63 G81 1190 A 1 HETATM 29 C C82 G81 . . . B 2 -8.675 -11.734 -12.713 1 42.89 ? C82 G81 1190 A 1 HETATM 30 C C84 G81 . . . B 2 -7.558 -11.253 -11.816 1 49.84 ? C84 G81 1190 A 1 HETATM 31 O O88 G81 . . . B 2 -7.309 -11.88 -10.781 1 54.82 ? O88 G81 1190 A 1 HETATM 32 O O86 G81 . . . B 2 -6.77 -10.082 -12.235 1 52.04 ? O86 G81 1190 A 1 HETATM 33 C C3 G81 . . . B 2 -5.418 -10.25 -12.754 1 54.24 ? C3 G81 1190 A 1 HETATM 34 C C5 G81 . . . B 2 -4.901 -9.092 -13.624 1 52.93 ? C5 G81 1190 A 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 34 #