data_3ZVF # _model_server_result.job_id dBH3FDX2FU6Cdc4YJBYjrg _model_server_result.datetime_utc '2024-10-12 08:28:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3zvf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1189}' # _entry.id 3ZVF # _exptl.entry_id 3ZVF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 652.778 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[(benzyloxy)carbonyl]-O-tert-butyl-L-seryl-N-{(2R)-5-ethoxy-5-oxo-1-[(3S)-2-oxopyrrolidin-3-yl]pentan-2-yl}-L-phenylalaninamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3ZVF _cell.length_a 55.87 _cell.length_b 55.87 _cell.length_c 170.15 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3ZVF _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_554 x-y,-y,-z-1/3 1 0 0 0 -1 0 0 0 -1 0 0 -56.716667 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 147 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 147 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C63 _struct_conn.ptnr2_label_comp_id G85 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id G85 _struct_conn.ptnr2_auth_seq_id 1189 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.805 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C35 H48 N4 O8' _chem_comp.formula_weight 652.778 _chem_comp.id G85 _chem_comp.mon_nstd_flag . _chem_comp.name N-[(benzyloxy)carbonyl]-O-tert-butyl-L-seryl-N-{(2R)-5-ethoxy-5-oxo-1-[(3S)-2-oxopyrrolidin-3-yl]pentan-2-yl}-L-phenylalaninamide _chem_comp.type peptide-like _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 G85 doub 83 n y C1 C10 G85 sing 84 n y C2 C4 G85 sing 85 n y C3 C5 G85 sing 86 n n C3 O86 G85 sing 87 n n C4 C6 G85 doub 88 n y C4 C13 G85 sing 89 n n C6 C8 G85 sing 90 n y C7 C9 G85 doub 91 n y C7 C53 G85 sing 92 n y C8 C10 G85 doub 93 n y C9 C11 G85 sing 94 n y C11 C55 G85 doub 95 n y C12 C29 G85 sing 96 n n C13 O15 G85 sing 97 n n O15 C17 G85 sing 98 n n C17 O19 G85 doub 99 n n C17 N21 G85 sing 100 n n N21 C23 G85 sing 101 n n C23 C25 G85 sing 102 n n C23 C31 G85 sing 103 n n C25 O27 G85 sing 104 n n O27 C29 G85 sing 105 n n C29 C43 G85 sing 106 n n C29 C45 G85 sing 107 n n C31 N33 G85 sing 108 n n C31 O35 G85 doub 109 n n N33 C37 G85 sing 110 n n C37 C39 G85 sing 111 n n C37 C41 G85 sing 112 n n C39 O47 G85 doub 113 n n C39 N49 G85 sing 114 n n C41 C51 G85 sing 115 n n N49 C57 G85 sing 116 n n C51 C53 G85 doub 117 n y C51 C55 G85 sing 118 n y C57 C59 G85 sing 119 n n C57 C63 G85 sing 120 n n C59 C61 G85 sing 121 n n C61 C65 G85 sing 122 n n C61 C73 G85 sing 123 n n C63 C82 G85 sing 124 n n C65 O66 G85 doub 125 n n C65 N69 G85 sing 126 n n N69 C71 G85 sing 127 n n C71 C73 G85 sing 128 n n C82 C84 G85 sing 129 n n C84 O86 G85 sing 130 n n C84 O88 G85 doub 131 n n C1 H1 G85 sing 132 n n C2 H2 G85 sing 133 n n C3 H3 G85 sing 134 n n C3 H3A G85 sing 135 n n C5 H5 G85 sing 136 n n C5 H5A G85 sing 137 n n C5 H5B G85 sing 138 n n C6 H6 G85 sing 139 n n C7 H7 G85 sing 140 n n C8 H8 G85 sing 141 n n C9 H9 G85 sing 142 n n C10 H10 G85 sing 143 n n C11 H11 G85 sing 144 n n C12 H12 G85 sing 145 n n C12 H12A G85 sing 146 n n C12 H12B G85 sing 147 n n C13 H13 G85 sing 148 n n C13 H13A G85 sing 149 n n N21 HN21 G85 sing 150 n n C23 H23 G85 sing 151 n n C25 H25 G85 sing 152 n n C25 H25A G85 sing 153 n n N33 HN33 G85 sing 154 n n C37 H37 G85 sing 155 n n C41 H41 G85 sing 156 n n C41 H41A G85 sing 157 n n C43 H43 G85 sing 158 n n C43 H43A G85 sing 159 n n C43 H43B G85 sing 160 n n C45 H45 G85 sing 161 n n C45 H45A G85 sing 162 n n C45 H45B G85 sing 163 n n N49 HN49 G85 sing 164 n n C53 H53 G85 sing 165 n n C55 H55 G85 sing 166 n n C57 H57 G85 sing 167 n n C59 H59 G85 sing 168 n n C59 H59A G85 sing 169 n n C61 H61 G85 sing 170 n n C63 H63 G85 sing 171 n n C63 H63A G85 sing 172 n n N69 HN69 G85 sing 173 n n C71 H71 G85 sing 174 n n C71 H71A G85 sing 175 n n C73 H73 G85 sing 176 n n C73 H73A G85 sing 177 n n C82 H82 G85 sing 178 n n C82 H82A G85 sing 179 n n # _atom_sites.entry_id 3ZVF _atom_sites.fract_transf_matrix[1][1] 0.017899 _atom_sites.fract_transf_matrix[1][2] 0.010334 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020668 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005877 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 G85 A 1 1189 1189 G85 G85 . C 3 HOH A 1 2001 2001 HOH HOH . C 3 HOH A 2 2002 2002 HOH HOH . C 3 HOH A 3 2003 2003 HOH HOH . C 3 HOH A 4 2004 2004 HOH HOH . C 3 HOH A 5 2005 2005 HOH HOH . C 3 HOH A 6 2006 2006 HOH HOH . C 3 HOH A 7 2007 2007 HOH HOH . C 3 HOH A 8 2008 2008 HOH HOH . C 3 HOH A 9 2009 2009 HOH HOH . C 3 HOH A 10 2010 2010 HOH HOH . C 3 HOH A 11 2011 2011 HOH HOH . C 3 HOH A 12 2012 2012 HOH HOH . C 3 HOH A 13 2013 2013 HOH HOH . C 3 HOH A 14 2014 2014 HOH HOH . C 3 HOH A 15 2015 2015 HOH HOH . C 3 HOH A 16 2016 2016 HOH HOH . C 3 HOH A 17 2017 2017 HOH HOH . C 3 HOH A 18 2018 2018 HOH HOH . C 3 HOH A 19 2019 2019 HOH HOH . C 3 HOH A 20 2020 2020 HOH HOH . C 3 HOH A 21 2021 2021 HOH HOH . C 3 HOH A 22 2022 2022 HOH HOH . C 3 HOH A 23 2023 2023 HOH HOH . C 3 HOH A 24 2024 2024 HOH HOH . C 3 HOH A 25 2025 2025 HOH HOH . C 3 HOH A 26 2026 2026 HOH HOH . C 3 HOH A 27 2027 2027 HOH HOH . C 3 HOH A 28 2028 2028 HOH HOH . C 3 HOH A 29 2029 2029 HOH HOH . C 3 HOH A 30 2030 2030 HOH HOH . C 3 HOH A 31 2031 2031 HOH HOH . C 3 HOH A 32 2032 2032 HOH HOH . C 3 HOH A 33 2033 2033 HOH HOH . C 3 HOH A 34 2034 2034 HOH HOH . C 3 HOH A 35 2035 2035 HOH HOH . C 3 HOH A 36 2036 2036 HOH HOH . C 3 HOH A 37 2037 2037 HOH HOH . C 3 HOH A 38 2038 2038 HOH HOH . C 3 HOH A 39 2039 2039 HOH HOH . C 3 HOH A 40 2040 2040 HOH HOH . C 3 HOH A 41 2041 2041 HOH HOH . C 3 HOH A 42 2042 2042 HOH HOH . C 3 HOH A 43 2043 2043 HOH HOH . C 3 HOH A 44 2044 2044 HOH HOH . C 3 HOH A 45 2045 2045 HOH HOH . C 3 HOH A 46 2046 2046 HOH HOH . C 3 HOH A 47 2047 2047 HOH HOH . C 3 HOH A 48 2048 2048 HOH HOH . C 3 HOH A 49 2049 2049 HOH HOH . C 3 HOH A 50 2050 2050 HOH HOH . C 3 HOH A 51 2051 2051 HOH HOH . C 3 HOH A 52 2052 2052 HOH HOH . C 3 HOH A 53 2053 2053 HOH HOH . C 3 HOH A 54 2054 2054 HOH HOH . C 3 HOH A 55 2055 2055 HOH HOH . C 3 HOH A 56 2056 2056 HOH HOH . C 3 HOH A 57 2057 2057 HOH HOH . C 3 HOH A 58 2058 2058 HOH HOH . C 3 HOH A 59 2059 2059 HOH HOH . C 3 HOH A 60 2060 2060 HOH HOH . C 3 HOH A 61 2061 2061 HOH HOH . C 3 HOH A 62 2062 2062 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C17 G85 . . . B 2 -13.268 -10.976 -13.637 1 42.24 ? C17 G85 1189 A 1 HETATM 2 O O19 G85 . . . B 2 -12.389 -10.939 -12.786 1 44.36 ? O19 G85 1189 A 1 HETATM 3 O O15 G85 . . . B 2 -14.182 -12.134 -13.616 1 44.61 ? O15 G85 1189 A 1 HETATM 4 C C13 G85 . . . B 2 -13.685 -13.36 -12.997 1 51.98 ? C13 G85 1189 A 1 HETATM 5 C C4 G85 . . . B 2 -14.049 -14.706 -13.658 1 56.56 ? C4 G85 1189 A 1 HETATM 6 C C2 G85 . . . B 2 -13.087 -15.419 -14.421 1 58.01 ? C2 G85 1189 A 1 HETATM 7 C C1 G85 . . . B 2 -13.462 -16.654 -15.015 1 58.46 ? C1 G85 1189 A 1 HETATM 8 C C10 G85 . . . B 2 -14.76 -17.201 -14.852 1 58.91 ? C10 G85 1189 A 1 HETATM 9 C C8 G85 . . . B 2 -15.73 -16.517 -14.099 1 56.87 ? C8 G85 1189 A 1 HETATM 10 C C6 G85 . . . B 2 -15.356 -15.285 -13.515 1 57.92 ? C6 G85 1189 A 1 HETATM 11 C C31 G85 . . . B 2 -13.209 -7.506 -14.439 1 31.85 ? C31 G85 1189 A 1 HETATM 12 N N21 G85 . . . B 2 -13.352 -9.997 -14.542 1 37.7 ? N21 G85 1189 A 1 HETATM 13 O O35 G85 . . . B 2 -14.311 -7.378 -14.952 1 32.74 ? O35 G85 1189 A 1 HETATM 14 C C12 G85 . . . B 2 -8.909 -10.99 -16.635 1 47.09 ? C12 G85 1189 A 1 HETATM 15 C C45 G85 . . . B 2 -9.475 -8.952 -18.006 1 44.83 ? C45 G85 1189 A 1 HETATM 16 C C43 G85 . . . B 2 -11.109 -10.89 -17.82 1 46.02 ? C43 G85 1189 A 1 HETATM 17 C C23 G85 . . . B 2 -12.471 -8.817 -14.577 1 36.25 ? C23 G85 1189 A 1 HETATM 18 C C25 G85 . . . B 2 -11.827 -8.801 -15.95 1 41.2 ? C25 G85 1189 A 1 HETATM 19 C C29 G85 . . . B 2 -10.035 -10.054 -17.094 1 47.22 ? C29 G85 1189 A 1 HETATM 20 O O27 G85 . . . B 2 -10.551 -9.457 -15.872 1 47.48 ? O27 G85 1189 A 1 HETATM 21 N N33 G85 . . . B 2 -12.654 -6.524 -13.75 1 28.01 ? N33 G85 1189 A 1 HETATM 22 C C37 G85 . . . B 2 -13.372 -5.269 -13.6 1 31.66 ? C37 G85 1189 A 1 HETATM 23 C C39 G85 . . . B 2 -13.465 -4.522 -14.933 1 31.78 ? C39 G85 1189 A 1 HETATM 24 O O47 G85 . . . B 2 -12.438 -4.405 -15.587 1 31.2 ? O47 G85 1189 A 1 HETATM 25 C C41 G85 . . . B 2 -12.6 -4.513 -12.497 1 35.08 ? C41 G85 1189 A 1 HETATM 26 C C51 G85 . . . B 2 -13.169 -3.105 -12.39 1 41.53 ? C51 G85 1189 A 1 HETATM 27 C C53 G85 . . . B 2 -14.532 -2.88 -12.019 1 42.74 ? C53 G85 1189 A 1 HETATM 28 C C55 G85 . . . B 2 -12.351 -1.973 -12.674 1 43.48 ? C55 G85 1189 A 1 HETATM 29 C C7 G85 . . . B 2 -15.082 -1.582 -11.951 1 40.32 ? C7 G85 1189 A 1 HETATM 30 C C11 G85 . . . B 2 -12.877 -0.669 -12.583 1 41.1 ? C11 G85 1189 A 1 HETATM 31 C C9 G85 . . . B 2 -14.229 -0.496 -12.233 1 41.07 ? C9 G85 1189 A 1 HETATM 32 O O86 G85 . . . B 2 -11.405 -0.814 -16.586 1 52.91 ? O86 G85 1189 A 1 HETATM 33 C C3 G85 . . . B 2 -10.718 -0.602 -15.328 1 56.9 ? C3 G85 1189 A 1 HETATM 34 C C5 G85 . . . B 2 -10.271 0.836 -15.067 1 56.69 ? C5 G85 1189 A 1 HETATM 35 N N49 G85 . . . B 2 -14.649 -4.039 -15.393 1 29.55 ? N49 G85 1189 A 1 HETATM 36 C C57 G85 . . . B 2 -14.747 -3.329 -16.684 1 32.34 ? C57 G85 1189 A 1 HETATM 37 C C59 G85 . . . B 2 -15.717 -4.078 -17.619 1 31.26 ? C59 G85 1189 A 1 HETATM 38 C C61 G85 . . . B 2 -15.273 -5.54 -17.831 1 31.59 ? C61 G85 1189 A 1 HETATM 39 C C63 G85 . . . B 2 -15.148 -1.868 -16.431 1 35.24 ? C63 G85 1189 A 1 HETATM 40 C C65 G85 . . . B 2 -16.12 -6.376 -18.76 1 30.95 ? C65 G85 1189 A 1 HETATM 41 O O66 G85 . . . B 2 -17.352 -6.317 -18.862 1 25.53 ? O66 G85 1189 A 1 HETATM 42 N N69 G85 . . . B 2 -15.339 -7.143 -19.415 1 31.3 ? N69 G85 1189 A 1 HETATM 43 C C71 G85 . . . B 2 -13.906 -6.869 -19.399 1 30.58 ? C71 G85 1189 A 1 HETATM 44 C C73 G85 . . . B 2 -13.867 -5.662 -18.457 1 30.14 ? C73 G85 1189 A 1 HETATM 45 C C82 G85 . . . B 2 -13.976 -1.047 -15.839 1 44.84 ? C82 G85 1189 A 1 HETATM 46 C C84 G85 . . . B 2 -12.875 -0.778 -16.867 1 50.67 ? C84 G85 1189 A 1 HETATM 47 O O88 G85 . . . B 2 -13.263 -0.547 -18.028 1 52.75 ? O88 G85 1189 A 1 # _model_server_stats.io_time_ms 46 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 47 #