data_3ZVG # _model_server_result.job_id VAmkrxoQHMgJ2OoucENRxg _model_server_result.datetime_utc '2024-11-29 02:11:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3zvg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1190}' # _entry.id 3ZVG # _exptl.entry_id 3ZVG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 632.788 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-(tert-butoxycarbonyl)-O-tert-butyl-L-threonyl-N-{(2R)-5-ethoxy-5-oxo-1-[(3S)-2-oxopyrrolidin-3-yl]pentan-2-yl}-L-phenylalaninamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3ZVG _cell.length_a 56.2 _cell.length_b 56.2 _cell.length_c 170.231 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3ZVG _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 147 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 147 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C63 _struct_conn.ptnr2_label_comp_id G86 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id G86 _struct_conn.ptnr2_auth_seq_id 1190 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.817 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C33 H52 N4 O8' _chem_comp.formula_weight 632.788 _chem_comp.id G86 _chem_comp.mon_nstd_flag . _chem_comp.name N-(tert-butoxycarbonyl)-O-tert-butyl-L-threonyl-N-{(2R)-5-ethoxy-5-oxo-1-[(3S)-2-oxopyrrolidin-3-yl]pentan-2-yl}-L-phenylalaninamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C13 G86 sing 83 n n C2 C13 G86 sing 84 n n C3 C5 G86 sing 85 n n C3 O86 G86 sing 86 n n C4 C13 G86 sing 87 n n C7 C9 G86 doub 88 n y C7 C53 G86 sing 89 n y C9 C11 G86 sing 90 n y C11 C55 G86 doub 91 n y C12 C29 G86 sing 92 n n C13 O15 G86 sing 93 n n C14 C25 G86 sing 94 n n O15 C17 G86 sing 95 n n C17 O19 G86 doub 96 n n C17 N21 G86 sing 97 n n N21 C23 G86 sing 98 n n C23 C25 G86 sing 99 n n C23 C31 G86 sing 100 n n C25 O27 G86 sing 101 n n O27 C29 G86 sing 102 n n C29 C43 G86 sing 103 n n C29 C45 G86 sing 104 n n C31 N33 G86 sing 105 n n C31 O35 G86 doub 106 n n N33 C37 G86 sing 107 n n C37 C39 G86 sing 108 n n C37 C41 G86 sing 109 n n C39 O47 G86 doub 110 n n C39 N49 G86 sing 111 n n C41 C51 G86 sing 112 n n N49 C57 G86 sing 113 n n C51 C53 G86 doub 114 n y C51 C55 G86 sing 115 n y C57 C59 G86 sing 116 n n C57 C63 G86 sing 117 n n C59 C61 G86 sing 118 n n C61 C65 G86 sing 119 n n C61 C73 G86 sing 120 n n C63 C82 G86 sing 121 n n C65 O66 G86 doub 122 n n C65 N69 G86 sing 123 n n N69 C71 G86 sing 124 n n C71 C73 G86 sing 125 n n C82 C84 G86 sing 126 n n C84 O86 G86 sing 127 n n C84 O88 G86 doub 128 n n C1 H1 G86 sing 129 n n C1 H1A G86 sing 130 n n C1 H1B G86 sing 131 n n C2 H2 G86 sing 132 n n C2 H2A G86 sing 133 n n C2 H2B G86 sing 134 n n C3 H3 G86 sing 135 n n C3 H3A G86 sing 136 n n C4 H4 G86 sing 137 n n C4 H4A G86 sing 138 n n C4 H4B G86 sing 139 n n C5 H5 G86 sing 140 n n C5 H5A G86 sing 141 n n C5 H5B G86 sing 142 n n C7 H7 G86 sing 143 n n C9 H9 G86 sing 144 n n C11 H11 G86 sing 145 n n C12 H12 G86 sing 146 n n C12 H12A G86 sing 147 n n C12 H12B G86 sing 148 n n C14 H14 G86 sing 149 n n C14 H14A G86 sing 150 n n C14 H14B G86 sing 151 n n N21 HN21 G86 sing 152 n n C23 H23 G86 sing 153 n n C25 H25 G86 sing 154 n n N33 HN33 G86 sing 155 n n C37 H37 G86 sing 156 n n C41 H41 G86 sing 157 n n C41 H41A G86 sing 158 n n C43 H43 G86 sing 159 n n C43 H43A G86 sing 160 n n C43 H43B G86 sing 161 n n C45 H45 G86 sing 162 n n C45 H45A G86 sing 163 n n C45 H45B G86 sing 164 n n N49 HN49 G86 sing 165 n n C53 H53 G86 sing 166 n n C55 H55 G86 sing 167 n n C57 H57 G86 sing 168 n n C59 H59 G86 sing 169 n n C59 H59A G86 sing 170 n n C61 H61 G86 sing 171 n n C63 H63 G86 sing 172 n n C63 H63A G86 sing 173 n n N69 HN69 G86 sing 174 n n C71 H71 G86 sing 175 n n C71 H71A G86 sing 176 n n C73 H73 G86 sing 177 n n C73 H73A G86 sing 178 n n C82 H82 G86 sing 179 n n C82 H82A G86 sing 180 n n # _atom_sites.entry_id 3ZVG _atom_sites.fract_transf_matrix[1][1] 0.017794 _atom_sites.fract_transf_matrix[1][2] 0.010273 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020546 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005874 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 G86 A 1 1190 1190 G86 G86 . C 3 HOH A 1 2001 2001 HOH HOH . C 3 HOH A 2 2002 2002 HOH HOH . C 3 HOH A 3 2003 2003 HOH HOH . C 3 HOH A 4 2004 2004 HOH HOH . C 3 HOH A 5 2005 2005 HOH HOH . C 3 HOH A 6 2006 2006 HOH HOH . C 3 HOH A 7 2007 2007 HOH HOH . C 3 HOH A 8 2008 2008 HOH HOH . C 3 HOH A 9 2009 2009 HOH HOH . C 3 HOH A 10 2010 2010 HOH HOH . C 3 HOH A 11 2011 2011 HOH HOH . C 3 HOH A 12 2012 2012 HOH HOH . C 3 HOH A 13 2013 2013 HOH HOH . C 3 HOH A 14 2014 2014 HOH HOH . C 3 HOH A 15 2015 2015 HOH HOH . C 3 HOH A 16 2016 2016 HOH HOH . C 3 HOH A 17 2017 2017 HOH HOH . C 3 HOH A 18 2018 2018 HOH HOH . C 3 HOH A 19 2019 2019 HOH HOH . C 3 HOH A 20 2020 2020 HOH HOH . C 3 HOH A 21 2021 2021 HOH HOH . C 3 HOH A 22 2022 2022 HOH HOH . C 3 HOH A 23 2023 2023 HOH HOH . C 3 HOH A 24 2024 2024 HOH HOH . C 3 HOH A 25 2025 2025 HOH HOH . C 3 HOH A 26 2026 2026 HOH HOH . C 3 HOH A 27 2027 2027 HOH HOH . C 3 HOH A 28 2028 2028 HOH HOH . C 3 HOH A 29 2029 2029 HOH HOH . C 3 HOH A 30 2030 2030 HOH HOH . C 3 HOH A 31 2031 2031 HOH HOH . C 3 HOH A 32 2032 2032 HOH HOH . C 3 HOH A 33 2033 2033 HOH HOH . C 3 HOH A 34 2034 2034 HOH HOH . C 3 HOH A 35 2035 2035 HOH HOH . C 3 HOH A 36 2036 2036 HOH HOH . C 3 HOH A 37 2037 2037 HOH HOH . C 3 HOH A 38 2038 2038 HOH HOH . C 3 HOH A 39 2039 2039 HOH HOH . C 3 HOH A 40 2040 2040 HOH HOH . C 3 HOH A 41 2041 2041 HOH HOH . C 3 HOH A 42 2042 2042 HOH HOH . C 3 HOH A 43 2043 2043 HOH HOH . C 3 HOH A 44 2044 2044 HOH HOH . C 3 HOH A 45 2045 2045 HOH HOH . C 3 HOH A 46 2046 2046 HOH HOH . C 3 HOH A 47 2047 2047 HOH HOH . C 3 HOH A 48 2048 2048 HOH HOH . C 3 HOH A 49 2049 2049 HOH HOH . C 3 HOH A 50 2050 2050 HOH HOH . C 3 HOH A 51 2051 2051 HOH HOH . C 3 HOH A 52 2052 2052 HOH HOH . C 3 HOH A 53 2053 2053 HOH HOH . C 3 HOH A 54 2054 2054 HOH HOH . C 3 HOH A 55 2055 2055 HOH HOH . C 3 HOH A 56 2056 2056 HOH HOH . C 3 HOH A 57 2057 2057 HOH HOH . C 3 HOH A 58 2058 2058 HOH HOH . C 3 HOH A 59 2059 2059 HOH HOH . C 3 HOH A 60 2060 2060 HOH HOH . C 3 HOH A 61 2061 2061 HOH HOH . C 3 HOH A 62 2062 2062 HOH HOH . C 3 HOH A 63 2063 2063 HOH HOH . C 3 HOH A 64 2064 2064 HOH HOH . C 3 HOH A 65 2065 2065 HOH HOH . C 3 HOH A 66 2066 2066 HOH HOH . C 3 HOH A 67 2067 2067 HOH HOH . C 3 HOH A 68 2068 2068 HOH HOH . C 3 HOH A 69 2069 2069 HOH HOH . C 3 HOH A 70 2070 2070 HOH HOH . C 3 HOH A 71 2071 2071 HOH HOH . C 3 HOH A 72 2072 2072 HOH HOH . C 3 HOH A 73 2073 2073 HOH HOH . C 3 HOH A 74 2074 2074 HOH HOH . C 3 HOH A 75 2075 2075 HOH HOH . C 3 HOH A 76 2076 2076 HOH HOH . C 3 HOH A 77 2077 2077 HOH HOH . C 3 HOH A 78 2078 2078 HOH HOH . C 3 HOH A 79 2079 2079 HOH HOH . C 3 HOH A 80 2080 2080 HOH HOH . C 3 HOH A 81 2081 2081 HOH HOH . C 3 HOH A 82 2082 2082 HOH HOH . C 3 HOH A 83 2083 2083 HOH HOH . C 3 HOH A 84 2084 2084 HOH HOH . C 3 HOH A 85 2085 2085 HOH HOH . C 3 HOH A 86 2086 2086 HOH HOH . C 3 HOH A 87 2087 2087 HOH HOH . C 3 HOH A 88 2088 2088 HOH HOH . C 3 HOH A 89 2089 2089 HOH HOH . C 3 HOH A 90 2090 2090 HOH HOH . C 3 HOH A 91 2091 2091 HOH HOH . C 3 HOH A 92 2092 2092 HOH HOH . C 3 HOH A 93 2093 2093 HOH HOH . C 3 HOH A 94 2094 2094 HOH HOH . C 3 HOH A 95 2095 2095 HOH HOH . C 3 HOH A 96 2096 2096 HOH HOH . C 3 HOH A 97 2097 2097 HOH HOH . C 3 HOH A 98 2098 2098 HOH HOH . C 3 HOH A 99 2099 2099 HOH HOH . C 3 HOH A 100 2100 2100 HOH HOH . C 3 HOH A 101 2101 2101 HOH HOH . C 3 HOH A 102 2102 2102 HOH HOH . C 3 HOH A 103 2103 2103 HOH HOH . C 3 HOH A 104 2104 2104 HOH HOH . C 3 HOH A 105 2105 2105 HOH HOH . C 3 HOH A 106 2106 2106 HOH HOH . C 3 HOH A 107 2107 2107 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 G86 . . . B 2 -18.277 -3.977 -15.05 1 33.51 ? C1 G86 1190 A 1 HETATM 2 C C2 G86 . . . B 2 -18.458 -5.761 -16.801 1 36.21 ? C2 G86 1190 A 1 HETATM 3 C C3 G86 . . . B 2 -6.294 -8.926 -12.827 1 53.93 ? C3 G86 1190 A 1 HETATM 4 C C4 G86 . . . B 2 -19.853 -5.875 -14.718 1 32.11 ? C4 G86 1190 A 1 HETATM 5 C C5 G86 . . . B 2 -5.093 -8.8 -13.767 1 53.53 ? C5 G86 1190 A 1 HETATM 6 C C7 G86 . . . B 2 -7.124 -11.112 -16.017 1 37.29 ? C7 G86 1190 A 1 HETATM 7 C C9 G86 . . . B 2 -7.691 -12.367 -16.309 1 38.1 ? C9 G86 1190 A 1 HETATM 8 C C11 G86 . . . B 2 -9.08 -12.511 -16.485 1 36.3 ? C11 G86 1190 A 1 HETATM 9 C C12 G86 . . . B 2 -14.847 -2.192 -12.149 1 34.94 ? C12 G86 1190 A 1 HETATM 10 C C13 G86 . . . B 2 -18.494 -5.474 -15.303 1 35.05 ? C13 G86 1190 A 1 HETATM 11 C C14 G86 . . . B 2 -11.979 -5.61 -12.21 1 30.58 ? C14 G86 1190 A 1 HETATM 12 O O15 G86 . . . B 2 -17.456 -6.257 -14.689 1 33.06 ? O15 G86 1190 A 1 HETATM 13 C C17 G86 . . . B 2 -16.026 -5.987 -14.76 1 31.07 ? C17 G86 1190 A 1 HETATM 14 O O19 G86 . . . B 2 -15.615 -5.237 -15.657 1 32.23 ? O19 G86 1190 A 1 HETATM 15 N N21 G86 . . . B 2 -15.231 -6.612 -13.872 1 29.19 ? N21 G86 1190 A 1 HETATM 16 C C23 G86 . . . B 2 -13.768 -6.447 -13.835 1 30.09 ? C23 G86 1190 A 1 HETATM 17 C C25 G86 . . . B 2 -13.473 -5.702 -12.52 1 31.66 ? C25 G86 1190 A 1 HETATM 18 O O27 G86 . . . B 2 -13.982 -4.364 -12.685 1 35.09 ? O27 G86 1190 A 1 HETATM 19 C C29 G86 . . . B 2 -14.723 -3.638 -11.661 1 36.09 ? C29 G86 1190 A 1 HETATM 20 C C31 G86 . . . B 2 -13.093 -7.784 -13.931 1 29.72 ? C31 G86 1190 A 1 HETATM 21 N N33 G86 . . . B 2 -12.004 -7.873 -14.676 1 30.54 ? N33 G86 1190 A 1 HETATM 22 O O35 G86 . . . B 2 -13.585 -8.753 -13.368 1 30.74 ? O35 G86 1190 A 1 HETATM 23 C C37 G86 . . . B 2 -11.281 -9.137 -14.836 1 32.52 ? C37 G86 1190 A 1 HETATM 24 C C39 G86 . . . B 2 -10.687 -9.527 -13.486 1 31.54 ? C39 G86 1190 A 1 HETATM 25 C C41 G86 . . . B 2 -10.23 -8.892 -15.926 1 33.73 ? C41 G86 1190 A 1 HETATM 26 C C43 G86 . . . B 2 -13.982 -3.602 -10.32 1 36.33 ? C43 G86 1190 A 1 HETATM 27 C C45 G86 . . . B 2 -16.135 -4.215 -11.483 1 31.97 ? C45 G86 1190 A 1 HETATM 28 O O47 G86 . . . B 2 -10.06 -8.684 -12.851 1 31.79 ? O47 G86 1190 A 1 HETATM 29 N N49 G86 . . . B 2 -10.913 -10.769 -13.019 1 29.9 ? N49 G86 1190 A 1 HETATM 30 C C51 G86 . . . B 2 -9.329 -10.108 -16.069 1 36.9 ? C51 G86 1190 A 1 HETATM 31 C C53 G86 . . . B 2 -7.94 -9.977 -15.895 1 37.5 ? C53 G86 1190 A 1 HETATM 32 C C55 G86 . . . B 2 -9.883 -11.381 -16.376 1 37.24 ? C55 G86 1190 A 1 HETATM 33 C C57 G86 . . . B 2 -10.418 -11.23 -11.711 1 29.33 ? C57 G86 1190 A 1 HETATM 34 C C59 G86 . . . B 2 -11.66 -11.662 -10.899 1 27.54 ? C59 G86 1190 A 1 HETATM 35 C C61 G86 . . . B 2 -12.674 -10.513 -10.611 1 27.46 ? C61 G86 1190 A 1 HETATM 36 C C63 G86 . . . B 2 -9.422 -12.365 -11.967 1 30.8 ? C63 G86 1190 A 1 HETATM 37 C C65 G86 . . . B 2 -13.704 -10.845 -9.549 1 28.29 ? C65 G86 1190 A 1 HETATM 38 O O66 G86 . . . B 2 -14.311 -11.916 -9.466 1 26.33 ? O66 G86 1190 A 1 HETATM 39 N N69 G86 . . . B 2 -13.882 -9.832 -8.809 1 28.67 ? N69 G86 1190 A 1 HETATM 40 C C71 G86 . . . B 2 -13.168 -8.592 -9.156 1 28.71 ? C71 G86 1190 A 1 HETATM 41 C C73 G86 . . . B 2 -12.085 -9.188 -10.083 1 28.4 ? C73 G86 1190 A 1 HETATM 42 C C82 G86 . . . B 2 -8.098 -11.825 -12.528 1 40.6 ? C82 G86 1190 A 1 HETATM 43 C C84 G86 . . . B 2 -7.299 -10.949 -11.569 1 45.89 ? C84 G86 1190 A 1 HETATM 44 O O86 G86 . . . B 2 -6.187 -10.14 -12.067 1 50.06 ? O86 G86 1190 A 1 HETATM 45 O O88 G86 . . . B 2 -7.529 -10.928 -10.354 1 47.58 ? O88 G86 1190 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 249 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 45 #