data_3ZVT # _model_server_result.job_id L75siJ0jXpql6sSnYubFqw _model_server_result.datetime_utc '2024-12-01 11:40:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3zvt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":500}' # _entry.id 3ZVT # _exptl.entry_id 3ZVT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 239.033 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2,6 DIMETHOXYBENZAMIDOBORONIC ACID' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.43 _cell.angle_gamma 90 _cell.entry_id 3ZVT _cell.length_a 103.993 _cell.length_b 92.227 _cell.length_c 107.044 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3ZVT _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 software_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 PISA monomeric 1 software_defined_assembly 3 PISA monomeric 1 software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,G,H,I,J,K 1 1 B,L,M,N,O,P 2 1 C,Q,R,S,T,U 3 1 D,V,W,X,Y,Z,AA,BA 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 L N N ? 2 Q N N ? 2 V N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A OG SER 49 A SER 49 1_555 E B B07 . A B07 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.461 ? covale ? covale2 A OG SER 298 A SER 298 1_555 E B B07 . A B07 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? covale ? covale3 A NZ LYS 410 A LYS 410 1_555 E B B07 . A B07 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.679 ? covale ? covale4 B OG SER 49 B SER 49 1_555 L B B07 . B B07 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale5 B OG SER 298 B SER 298 1_555 L B B07 . B B07 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.463 ? covale ? covale6 B NZ LYS 410 B LYS 410 1_555 L B B07 . B B07 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.681 ? covale ? covale7 C OG SER 49 C SER 49 1_555 Q B B07 . C B07 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale8 C OG SER 298 C SER 298 1_555 Q B B07 . C B07 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale9 C NZ LYS 410 C LYS 410 1_555 Q B B07 . C B07 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.675 ? covale ? covale10 D OG SER 49 D SER 49 1_555 V B B07 . D B07 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale11 D OG SER 298 D SER 298 1_555 V B B07 . D B07 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale12 D NZ LYS 410 D LYS 410 1_555 V B B07 . D B07 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.676 ? metalc ? metalc1 A O GLU 188 A GLU 188 1_555 J MG MG . A MG 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? metalc ? metalc2 A NE2 HIS 247 A HIS 247 1_555 J MG MG . A MG 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.523 ? metalc ? metalc3 A OE1 GLU 251 A GLU 251 1_555 J MG MG . A MG 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.752 ? metalc ? metalc4 A OE2 GLU 251 A GLU 251 1_555 J MG MG . A MG 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc5 D O GLU 188 D GLU 188 1_555 AA MG MG . D MG 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.946 ? metalc ? metalc6 D OE2 GLU 251 D GLU 251 1_555 AA MG MG . D MG 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.956 ? metalc ? metalc7 D ND1 HIS 462 D HIS 462 1_555 BA MG MG . D MG 611 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? # _chem_comp.formula 'C10 H14 B N O5' _chem_comp.formula_weight 239.033 _chem_comp.id B07 _chem_comp.mon_nstd_flag . _chem_comp.name '2,6 DIMETHOXYBENZAMIDOBORONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag B C3 B07 sing 70 n n B OT1 B07 sing 71 n n B OT2 B07 sing 72 n n C3 N4 B07 sing 73 n n N4 C5 B07 sing 74 n n O6 C5 B07 doub 75 n n C5 C7 B07 sing 76 n n C7 C14 B07 sing 77 n y C7 C8 B07 doub 78 n y C14 O15 B07 sing 79 n n C14 C13 B07 doub 80 n y O15 C15 B07 sing 81 n n C13 C12 B07 sing 82 n y C12 C11 B07 doub 83 n y C11 C8 B07 sing 84 n y C8 O9 B07 sing 85 n n O9 C10 B07 sing 86 n n C3 H31C B07 sing 87 n n C3 H32C B07 sing 88 n n OT1 HT1 B07 sing 89 n n OT2 HT2 B07 sing 90 n n N4 H4 B07 sing 91 n n C13 H13 B07 sing 92 n n C15 H151 B07 sing 93 n n C15 H152 B07 sing 94 n n C15 H153 B07 sing 95 n n C12 H12 B07 sing 96 n n C11 H11 B07 sing 97 n n C10 H101 B07 sing 98 n n C10 H102 B07 sing 99 n n C10 H103 B07 sing 100 n n # _atom_sites.entry_id 3ZVT _atom_sites.fract_transf_matrix[1][1] 0.009616 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000745 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010843 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00937 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 B07 A 1 500 500 B07 B07 . F 3 SO4 A 1 601 601 SO4 SO4 . G 3 SO4 A 1 602 602 SO4 SO4 . H 3 SO4 A 1 603 603 SO4 SO4 . I 3 SO4 A 1 604 604 SO4 SO4 . J 4 MG A 1 610 610 MG MG . K 4 MG A 1 611 611 MG MG . L 2 B07 B 1 500 500 B07 B07 . M 3 SO4 B 1 601 601 SO4 SO4 . N 3 SO4 B 1 602 602 SO4 SO4 . O 3 SO4 B 1 603 603 SO4 SO4 . P 3 SO4 B 1 604 604 SO4 SO4 . Q 2 B07 C 1 500 500 B07 B07 . R 3 SO4 C 1 601 601 SO4 SO4 . S 3 SO4 C 1 602 602 SO4 SO4 . T 3 SO4 C 1 603 603 SO4 SO4 . U 3 SO4 C 1 604 604 SO4 SO4 . V 2 B07 D 1 500 500 B07 B07 . W 3 SO4 D 1 601 601 SO4 SO4 . X 3 SO4 D 1 602 602 SO4 SO4 . Y 3 SO4 D 1 603 603 SO4 SO4 . Z 3 SO4 D 1 604 604 SO4 SO4 . AA 4 MG D 1 610 610 MG MG . BA 4 MG D 1 611 611 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 B B B07 . . . L 2 63.249 26.219 35.144 1 31.06 ? B B07 500 B 1 HETATM 2 C C3 B07 . . . L 2 64.321 25.844 34.007 1 37.32 ? C3 B07 500 B 1 HETATM 3 N N4 B07 . . . L 2 64.55 24.402 33.886 1 39.91 ? N4 B07 500 B 1 HETATM 4 O O6 B07 . . . L 2 64.904 24.329 31.677 1 41.32 ? O6 B07 500 B 1 HETATM 5 C C5 B07 . . . L 2 64.82 23.747 32.751 1 41.7 ? C5 B07 500 B 1 HETATM 6 C C7 B07 . . . L 2 65.052 22.265 32.773 1 42.96 ? C7 B07 500 B 1 HETATM 7 C C14 B07 . . . L 2 64.004 21.356 32.752 1 43.21 ? C14 B07 500 B 1 HETATM 8 O O15 B07 . . . L 2 62.716 21.806 32.731 1 44.45 ? O15 B07 500 B 1 HETATM 9 C C15 B07 . . . L 2 61.637 21.03 33.264 1 45.4 ? C15 B07 500 B 1 HETATM 10 C C13 B07 . . . L 2 64.258 19.99 32.749 1 43.07 ? C13 B07 500 B 1 HETATM 11 C C12 B07 . . . L 2 65.573 19.534 32.768 1 44.2 ? C12 B07 500 B 1 HETATM 12 C C11 B07 . . . L 2 66.629 20.444 32.784 1 44.58 ? C11 B07 500 B 1 HETATM 13 C C8 B07 . . . L 2 66.361 21.812 32.786 1 44.52 ? C8 B07 500 B 1 HETATM 14 O O9 B07 . . . L 2 67.392 22.721 32.801 1 46.52 ? O9 B07 500 B 1 HETATM 15 C C10 B07 . . . L 2 68.058 23.08 34.023 1 47.7 ? C10 B07 500 B 1 # _model_server_stats.io_time_ms 30 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 15 #