data_3ZVT
#
_model_server_result.job_id            KepMtrdNJvz2_oZQEBtaQg 
_model_server_result.datetime_utc      '2024-12-01 11:33:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3zvt 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Q","auth_seq_id":500}' 
#
_entry.id    3ZVT 
#
_exptl.entry_id    3ZVT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              239.033 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '2,6 DIMETHOXYBENZAMIDOBORONIC ACID' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          94.43 
_cell.angle_gamma         90 
_cell.entry_id            3ZVT 
_cell.length_a            103.993 
_cell.length_b            92.227 
_cell.length_c            107.044 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3ZVT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 software_defined_assembly 1 
PISA monomeric 1 software_defined_assembly 2 
PISA monomeric 1 software_defined_assembly 3 
PISA monomeric 1 software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F,G,H,I,J,K 1 1 
B,L,M,N,O,P 2 1 
C,Q,R,S,T,U 3 1 
D,V,W,X,Y,Z,AA,BA 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 L N N 
? 2 Q N N 
? 2 V N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A OG SER 49 A SER 49 1_555 E B B07 . A B07 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.461 ? 
covale ? covale2 A OG SER 298 A SER 298 1_555 E B B07 . A B07 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? 
covale ? covale3 A NZ LYS 410 A LYS 410 1_555 E B B07 . A B07 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.679 ? 
covale ? covale4 B OG SER 49 B SER 49 1_555 L B B07 . B B07 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? 
covale ? covale5 B OG SER 298 B SER 298 1_555 L B B07 . B B07 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.463 ? 
covale ? covale6 B NZ LYS 410 B LYS 410 1_555 L B B07 . B B07 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.681 ? 
covale ? covale7 C OG SER 49 C SER 49 1_555 Q B B07 . C B07 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? 
covale ? covale8 C OG SER 298 C SER 298 1_555 Q B B07 . C B07 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? 
covale ? covale9 C NZ LYS 410 C LYS 410 1_555 Q B B07 . C B07 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.675 ? 
covale ? covale10 D OG SER 49 D SER 49 1_555 V B B07 . D B07 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? 
covale ? covale11 D OG SER 298 D SER 298 1_555 V B B07 . D B07 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? 
covale ? covale12 D NZ LYS 410 D LYS 410 1_555 V B B07 . D B07 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.676 ? 
metalc ? metalc1 A O GLU 188 A GLU 188 1_555 J MG MG . A MG 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? 
metalc ? metalc2 A NE2 HIS 247 A HIS 247 1_555 J MG MG . A MG 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.523 ? 
metalc ? metalc3 A OE1 GLU 251 A GLU 251 1_555 J MG MG . A MG 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.752 ? 
metalc ? metalc4 A OE2 GLU 251 A GLU 251 1_555 J MG MG . A MG 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? 
metalc ? metalc5 D O GLU 188 D GLU 188 1_555 AA MG MG . D MG 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.946 ? 
metalc ? metalc6 D OE2 GLU 251 D GLU 251 1_555 AA MG MG . D MG 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.956 ? 
metalc ? metalc7 D ND1 HIS 462 D HIS 462 1_555 BA MG MG . D MG 611 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? 
#
_chem_comp.formula           'C10 H14 B N O5' 
_chem_comp.formula_weight    239.033 
_chem_comp.id                B07 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '2,6 DIMETHOXYBENZAMIDOBORONIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
B C3 B07 sing 70 n n 
B OT1 B07 sing 71 n n 
B OT2 B07 sing 72 n n 
C3 N4 B07 sing 73 n n 
N4 C5 B07 sing 74 n n 
O6 C5 B07 doub 75 n n 
C5 C7 B07 sing 76 n n 
C7 C14 B07 sing 77 n y 
C7 C8 B07 doub 78 n y 
C14 O15 B07 sing 79 n n 
C14 C13 B07 doub 80 n y 
O15 C15 B07 sing 81 n n 
C13 C12 B07 sing 82 n y 
C12 C11 B07 doub 83 n y 
C11 C8 B07 sing 84 n y 
C8 O9 B07 sing 85 n n 
O9 C10 B07 sing 86 n n 
C3 H31C B07 sing 87 n n 
C3 H32C B07 sing 88 n n 
OT1 HT1 B07 sing 89 n n 
OT2 HT2 B07 sing 90 n n 
N4 H4 B07 sing 91 n n 
C13 H13 B07 sing 92 n n 
C15 H151 B07 sing 93 n n 
C15 H152 B07 sing 94 n n 
C15 H153 B07 sing 95 n n 
C12 H12 B07 sing 96 n n 
C11 H11 B07 sing 97 n n 
C10 H101 B07 sing 98 n n 
C10 H102 B07 sing 99 n n 
C10 H103 B07 sing 100 n n 
#
_atom_sites.entry_id                     3ZVT 
_atom_sites.fract_transf_matrix[1][1]    0.009616 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000745 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010843 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00937 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 B07 A 1 500 500 B07 B07 . 
F 3 SO4 A 1 601 601 SO4 SO4 . 
G 3 SO4 A 1 602 602 SO4 SO4 . 
H 3 SO4 A 1 603 603 SO4 SO4 . 
I 3 SO4 A 1 604 604 SO4 SO4 . 
J 4 MG A 1 610 610 MG MG . 
K 4 MG A 1 611 611 MG MG . 
L 2 B07 B 1 500 500 B07 B07 . 
M 3 SO4 B 1 601 601 SO4 SO4 . 
N 3 SO4 B 1 602 602 SO4 SO4 . 
O 3 SO4 B 1 603 603 SO4 SO4 . 
P 3 SO4 B 1 604 604 SO4 SO4 . 
Q 2 B07 C 1 500 500 B07 B07 . 
R 3 SO4 C 1 601 601 SO4 SO4 . 
S 3 SO4 C 1 602 602 SO4 SO4 . 
T 3 SO4 C 1 603 603 SO4 SO4 . 
U 3 SO4 C 1 604 604 SO4 SO4 . 
V 2 B07 D 1 500 500 B07 B07 . 
W 3 SO4 D 1 601 601 SO4 SO4 . 
X 3 SO4 D 1 602 602 SO4 SO4 . 
Y 3 SO4 D 1 603 603 SO4 SO4 . 
Z 3 SO4 D 1 604 604 SO4 SO4 . 
AA 4 MG D 1 610 610 MG MG . 
BA 4 MG D 1 611 611 MG MG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 B B B07 . . . Q 2 17.32 71.195 -14.108 1 30.15 ? B B07 500 C 1 
HETATM 2 C C3 B07 . . . Q 2 18.554 70.909 -15.091 1 36.92 ? C3 B07 500 C 1 
HETATM 3 N N4 B07 . . . Q 2 18.634 69.508 -15.501 1 38.47 ? N4 B07 500 C 1 
HETATM 4 O O6 B07 . . . Q 2 18.808 69.948 -17.682 1 40.74 ? O6 B07 500 C 1 
HETATM 5 C C5 B07 . . . Q 2 18.763 69.131 -16.772 1 40.73 ? C5 B07 500 C 1 
HETATM 6 C C7 B07 . . . Q 2 18.847 67.676 -17.118 1 42.53 ? C7 B07 500 C 1 
HETATM 7 C C14 B07 . . . Q 2 17.681 66.901 -17.118 1 43.04 ? C14 B07 500 C 1 
HETATM 8 O O15 B07 . . . Q 2 16.489 67.491 -16.769 1 44.09 ? O15 B07 500 C 1 
HETATM 9 C C15 B07 . . . Q 2 15.281 67.302 -17.506 1 45.4 ? C15 B07 500 C 1 
HETATM 10 C C13 B07 . . . Q 2 17.731 65.545 -17.441 1 42.37 ? C13 B07 500 C 1 
HETATM 11 C C12 B07 . . . Q 2 18.96 64.985 -17.781 1 43.65 ? C12 B07 500 C 1 
HETATM 12 C C11 B07 . . . Q 2 20.13 65.762 -17.789 1 43.92 ? C11 B07 500 C 1 
HETATM 13 C C8 B07 . . . Q 2 20.086 67.127 -17.465 1 43.31 ? C8 B07 500 C 1 
HETATM 14 O O9 B07 . . . Q 2 21.23 67.912 -17.452 1 42.6 ? O9 B07 500 C 1 
HETATM 15 C C10 B07 . . . Q 2 22.247 67.884 -18.461 1 42.02 ? C10 B07 500 C 1 
#
_model_server_stats.io_time_ms              27 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    30 
_model_server_stats.query_time_ms           232 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           15 
#