data_3ZVT # _model_server_result.job_id iQ2neu8nArWhiYKPbEGfFQ _model_server_result.datetime_utc '2024-12-01 11:42:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3zvt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"AA","auth_seq_id":610}' # _entry.id 3ZVT # _exptl.entry_id 3ZVT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.43 _cell.angle_gamma 90 _cell.entry_id 3ZVT _cell.length_a 103.993 _cell.length_b 92.227 _cell.length_c 107.044 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3ZVT _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 software_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 PISA monomeric 1 software_defined_assembly 3 PISA monomeric 1 software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,G,H,I,J,K 1 1 B,L,M,N,O,P 2 1 C,Q,R,S,T,U 3 1 D,V,W,X,Y,Z,AA,BA 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 J N N ? 4 K N N ? 4 AA N N ? 4 BA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A OG SER 49 A SER 49 1_555 E B B07 . A B07 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.461 ? covale ? covale2 A OG SER 298 A SER 298 1_555 E B B07 . A B07 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? covale ? covale3 A NZ LYS 410 A LYS 410 1_555 E B B07 . A B07 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.679 ? covale ? covale4 B OG SER 49 B SER 49 1_555 L B B07 . B B07 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale5 B OG SER 298 B SER 298 1_555 L B B07 . B B07 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.463 ? covale ? covale6 B NZ LYS 410 B LYS 410 1_555 L B B07 . B B07 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.681 ? covale ? covale7 C OG SER 49 C SER 49 1_555 Q B B07 . C B07 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale8 C OG SER 298 C SER 298 1_555 Q B B07 . C B07 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale9 C NZ LYS 410 C LYS 410 1_555 Q B B07 . C B07 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.675 ? covale ? covale10 D OG SER 49 D SER 49 1_555 V B B07 . D B07 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale11 D OG SER 298 D SER 298 1_555 V B B07 . D B07 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale12 D NZ LYS 410 D LYS 410 1_555 V B B07 . D B07 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.676 ? metalc ? metalc1 A O GLU 188 A GLU 188 1_555 J MG MG . A MG 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? metalc ? metalc2 A NE2 HIS 247 A HIS 247 1_555 J MG MG . A MG 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.523 ? metalc ? metalc3 A OE1 GLU 251 A GLU 251 1_555 J MG MG . A MG 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.752 ? metalc ? metalc4 A OE2 GLU 251 A GLU 251 1_555 J MG MG . A MG 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc5 D O GLU 188 D GLU 188 1_555 AA MG MG . D MG 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.946 ? metalc ? metalc6 D OE2 GLU 251 D GLU 251 1_555 AA MG MG . D MG 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.956 ? metalc ? metalc7 D ND1 HIS 462 D HIS 462 1_555 BA MG MG . D MG 611 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3ZVT _atom_sites.fract_transf_matrix[1][1] 0.009616 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000745 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010843 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00937 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 B07 A 1 500 500 B07 B07 . F 3 SO4 A 1 601 601 SO4 SO4 . G 3 SO4 A 1 602 602 SO4 SO4 . H 3 SO4 A 1 603 603 SO4 SO4 . I 3 SO4 A 1 604 604 SO4 SO4 . J 4 MG A 1 610 610 MG MG . K 4 MG A 1 611 611 MG MG . L 2 B07 B 1 500 500 B07 B07 . M 3 SO4 B 1 601 601 SO4 SO4 . N 3 SO4 B 1 602 602 SO4 SO4 . O 3 SO4 B 1 603 603 SO4 SO4 . P 3 SO4 B 1 604 604 SO4 SO4 . Q 2 B07 C 1 500 500 B07 B07 . R 3 SO4 C 1 601 601 SO4 SO4 . S 3 SO4 C 1 602 602 SO4 SO4 . T 3 SO4 C 1 603 603 SO4 SO4 . U 3 SO4 C 1 604 604 SO4 SO4 . V 2 B07 D 1 500 500 B07 B07 . W 3 SO4 D 1 601 601 SO4 SO4 . X 3 SO4 D 1 602 602 SO4 SO4 . Y 3 SO4 D 1 603 603 SO4 SO4 . Z 3 SO4 D 1 604 604 SO4 SO4 . AA 4 MG D 1 610 610 MG MG . BA 4 MG D 1 611 611 MG MG . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id AA _atom_site.label_entity_id 4 _atom_site.Cartn_x 35.23 _atom_site.Cartn_y 109.583 _atom_site.Cartn_z 3.113 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 69.13 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 610 _atom_site.auth_asym_id D _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 215 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 34 _model_server_stats.query_time_ms 684 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 1 #