data_3ZW9 # _model_server_result.job_id RHg9ZVt4Q2n-tgAbj6ntzQ _model_server_result.datetime_utc '2024-10-12 17:18:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3zw9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1721}' # _entry.id 3ZW9 # _exptl.entry_id 3ZW9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3ZW9 _cell.length_a 65.592 _cell.length_b 126.652 _cell.length_c 225.432 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3ZW9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,J 1 1 B,F,G,H,I,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 237 n n PA O2A NAD sing 238 n n PA O5B NAD sing 239 n n PA O3 NAD sing 240 n n O2A HOA2 NAD sing 241 n n O5B C5B NAD sing 242 n n C5B C4B NAD sing 243 n n C5B H51A NAD sing 244 n n C5B H52A NAD sing 245 n n C4B O4B NAD sing 246 n n C4B C3B NAD sing 247 n n C4B H4B NAD sing 248 n n O4B C1B NAD sing 249 n n C3B O3B NAD sing 250 n n C3B C2B NAD sing 251 n n C3B H3B NAD sing 252 n n O3B HO3A NAD sing 253 n n C2B O2B NAD sing 254 n n C2B C1B NAD sing 255 n n C2B H2B NAD sing 256 n n O2B HO2A NAD sing 257 n n C1B N9A NAD sing 258 n n C1B H1B NAD sing 259 n n N9A C8A NAD sing 260 n y N9A C4A NAD sing 261 n y C8A N7A NAD doub 262 n y C8A H8A NAD sing 263 n n N7A C5A NAD sing 264 n y C5A C6A NAD sing 265 n y C5A C4A NAD doub 266 n y C6A N6A NAD sing 267 n n C6A N1A NAD doub 268 n y N6A H61A NAD sing 269 n n N6A H62A NAD sing 270 n n N1A C2A NAD sing 271 n y C2A N3A NAD doub 272 n y C2A H2A NAD sing 273 n n N3A C4A NAD sing 274 n y O3 PN NAD sing 275 n n PN O1N NAD doub 276 n n PN O2N NAD sing 277 n n PN O5D NAD sing 278 n n O5D C5D NAD sing 279 n n C5D C4D NAD sing 280 n n C5D H51N NAD sing 281 n n C5D H52N NAD sing 282 n n C4D O4D NAD sing 283 n n C4D C3D NAD sing 284 n n C4D H4D NAD sing 285 n n O4D C1D NAD sing 286 n n C3D O3D NAD sing 287 n n C3D C2D NAD sing 288 n n C3D H3D NAD sing 289 n n O3D HO3N NAD sing 290 n n C2D O2D NAD sing 291 n n C2D C1D NAD sing 292 n n C2D H2D NAD sing 293 n n O2D HO2N NAD sing 294 n n C1D N1N NAD sing 295 n n C1D H1D NAD sing 296 n n N1N C2N NAD sing 297 n y N1N C6N NAD doub 298 n y C2N C3N NAD doub 299 n y C2N H2N NAD sing 300 n n C3N C7N NAD sing 301 n n C3N C4N NAD sing 302 n y C7N O7N NAD doub 303 n n C7N N7N NAD sing 304 n n N7N H71N NAD sing 305 n n N7N H72N NAD sing 306 n n C4N C5N NAD doub 307 n y C4N H4N NAD sing 308 n n C5N C6N NAD sing 309 n y C5N H5N NAD sing 310 n n C6N H6N NAD sing 311 n n # _atom_sites.entry_id 3ZW9 _atom_sites.fract_transf_matrix[1][1] 0.015246 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007896 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004436 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAD A 1 1721 1721 NAD NAD . D 3 T1G A 1 1722 1722 T1G T1G . E 4 SO4 A 1 1723 1723 SO4 SO4 . F 2 NAD B 1 1719 1719 NAD NAD . G 4 SO4 B 1 1720 1720 SO4 SO4 . H 3 T1G B 1 1721 1721 T1G T1G . I 4 SO4 B 1 1722 1722 SO4 SO4 . J 5 HOH A 1 2001 2001 HOH HOH . J 5 HOH A 2 2002 2002 HOH HOH . J 5 HOH A 3 2003 2003 HOH HOH . J 5 HOH A 4 2004 2004 HOH HOH . J 5 HOH A 5 2005 2005 HOH HOH . J 5 HOH A 6 2006 2006 HOH HOH . J 5 HOH A 7 2007 2007 HOH HOH . J 5 HOH A 8 2008 2008 HOH HOH . J 5 HOH A 9 2009 2009 HOH HOH . J 5 HOH A 10 2010 2010 HOH HOH . J 5 HOH A 11 2011 2011 HOH HOH . J 5 HOH A 12 2012 2012 HOH HOH . J 5 HOH A 13 2013 2013 HOH HOH . J 5 HOH A 14 2014 2014 HOH HOH . J 5 HOH A 15 2015 2015 HOH HOH . J 5 HOH A 16 2016 2016 HOH HOH . J 5 HOH A 17 2017 2017 HOH HOH . J 5 HOH A 18 2018 2018 HOH HOH . J 5 HOH A 19 2019 2019 HOH HOH . J 5 HOH A 20 2020 2020 HOH HOH . J 5 HOH A 21 2021 2021 HOH HOH . J 5 HOH A 22 2022 2022 HOH HOH . J 5 HOH A 23 2023 2023 HOH HOH . J 5 HOH A 24 2024 2024 HOH HOH . J 5 HOH A 25 2025 2025 HOH HOH . J 5 HOH A 26 2026 2026 HOH HOH . J 5 HOH A 27 2027 2027 HOH HOH . J 5 HOH A 28 2028 2028 HOH HOH . J 5 HOH A 29 2029 2029 HOH HOH . J 5 HOH A 30 2030 2030 HOH HOH . J 5 HOH A 31 2031 2031 HOH HOH . J 5 HOH A 32 2032 2032 HOH HOH . J 5 HOH A 33 2033 2033 HOH HOH . J 5 HOH A 34 2034 2034 HOH HOH . J 5 HOH A 35 2035 2035 HOH HOH . J 5 HOH A 36 2036 2036 HOH HOH . J 5 HOH A 37 2037 2037 HOH HOH . J 5 HOH A 38 2038 2038 HOH HOH . J 5 HOH A 39 2039 2039 HOH HOH . J 5 HOH A 40 2040 2040 HOH HOH . J 5 HOH A 41 2041 2041 HOH HOH . J 5 HOH A 42 2042 2042 HOH HOH . J 5 HOH A 43 2043 2043 HOH HOH . J 5 HOH A 44 2044 2044 HOH HOH . J 5 HOH A 45 2045 2045 HOH HOH . J 5 HOH A 46 2046 2046 HOH HOH . J 5 HOH A 47 2047 2047 HOH HOH . J 5 HOH A 48 2048 2048 HOH HOH . J 5 HOH A 49 2049 2049 HOH HOH . J 5 HOH A 50 2050 2050 HOH HOH . J 5 HOH A 51 2051 2051 HOH HOH . J 5 HOH A 52 2052 2052 HOH HOH . J 5 HOH A 53 2053 2053 HOH HOH . J 5 HOH A 54 2054 2054 HOH HOH . J 5 HOH A 55 2055 2055 HOH HOH . J 5 HOH A 56 2056 2056 HOH HOH . J 5 HOH A 57 2057 2057 HOH HOH . J 5 HOH A 58 2058 2058 HOH HOH . J 5 HOH A 59 2059 2059 HOH HOH . J 5 HOH A 60 2060 2060 HOH HOH . J 5 HOH A 61 2061 2061 HOH HOH . J 5 HOH A 62 2062 2062 HOH HOH . J 5 HOH A 63 2063 2063 HOH HOH . J 5 HOH A 64 2064 2064 HOH HOH . J 5 HOH A 65 2065 2065 HOH HOH . J 5 HOH A 66 2066 2066 HOH HOH . K 5 HOH B 1 2001 2001 HOH HOH . K 5 HOH B 2 2002 2002 HOH HOH . K 5 HOH B 3 2003 2003 HOH HOH . K 5 HOH B 4 2004 2004 HOH HOH . K 5 HOH B 5 2005 2005 HOH HOH . K 5 HOH B 6 2006 2006 HOH HOH . K 5 HOH B 7 2007 2007 HOH HOH . K 5 HOH B 8 2008 2008 HOH HOH . K 5 HOH B 9 2009 2009 HOH HOH . K 5 HOH B 10 2010 2010 HOH HOH . K 5 HOH B 11 2011 2011 HOH HOH . K 5 HOH B 12 2012 2012 HOH HOH . K 5 HOH B 13 2013 2013 HOH HOH . K 5 HOH B 14 2014 2014 HOH HOH . K 5 HOH B 15 2015 2015 HOH HOH . K 5 HOH B 16 2016 2016 HOH HOH . K 5 HOH B 17 2017 2017 HOH HOH . K 5 HOH B 18 2018 2018 HOH HOH . K 5 HOH B 19 2019 2019 HOH HOH . K 5 HOH B 20 2020 2020 HOH HOH . K 5 HOH B 21 2021 2021 HOH HOH . K 5 HOH B 22 2022 2022 HOH HOH . K 5 HOH B 23 2023 2023 HOH HOH . K 5 HOH B 24 2024 2024 HOH HOH . K 5 HOH B 25 2025 2025 HOH HOH . K 5 HOH B 26 2026 2026 HOH HOH . K 5 HOH B 27 2027 2027 HOH HOH . K 5 HOH B 28 2028 2028 HOH HOH . K 5 HOH B 29 2029 2029 HOH HOH . K 5 HOH B 30 2030 2030 HOH HOH . K 5 HOH B 31 2031 2031 HOH HOH . K 5 HOH B 32 2032 2032 HOH HOH . K 5 HOH B 33 2033 2033 HOH HOH . K 5 HOH B 34 2034 2034 HOH HOH . K 5 HOH B 35 2035 2035 HOH HOH . K 5 HOH B 36 2036 2036 HOH HOH . K 5 HOH B 37 2037 2037 HOH HOH . K 5 HOH B 38 2038 2038 HOH HOH . K 5 HOH B 39 2039 2039 HOH HOH . K 5 HOH B 40 2040 2040 HOH HOH . K 5 HOH B 41 2041 2041 HOH HOH . K 5 HOH B 42 2042 2042 HOH HOH . K 5 HOH B 43 2043 2043 HOH HOH . K 5 HOH B 44 2044 2044 HOH HOH . K 5 HOH B 45 2045 2045 HOH HOH . K 5 HOH B 46 2046 2046 HOH HOH . K 5 HOH B 47 2047 2047 HOH HOH . K 5 HOH B 48 2048 2048 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . C 2 -36.94 -0.527 -81.334 1 82.95 ? PA NAD 1721 A 1 HETATM 2 O O1A NAD . . . C 2 -35.822 -0.224 -80.4 1 82.31 ? O1A NAD 1721 A 1 HETATM 3 O O2A NAD . . . C 2 -38.193 -0.02 -80.718 1 82.15 ? O2A NAD 1721 A 1 HETATM 4 O O5B NAD . . . C 2 -37.039 -2.117 -81.684 1 81.47 ? O5B NAD 1721 A 1 HETATM 5 C C5B NAD . . . C 2 -35.954 -2.848 -82.229 1 81.86 ? C5B NAD 1721 A 1 HETATM 6 C C4B NAD . . . C 2 -36.03 -4.27 -81.678 1 82.7 ? C4B NAD 1721 A 1 HETATM 7 O O4B NAD . . . C 2 -35.106 -5.197 -82.241 1 82.1 ? O4B NAD 1721 A 1 HETATM 8 C C3B NAD . . . C 2 -35.792 -4.297 -80.173 1 82.64 ? C3B NAD 1721 A 1 HETATM 9 O O3B NAD . . . C 2 -37.055 -4.29 -79.542 1 83.13 ? O3B NAD 1721 A 1 HETATM 10 C C2B NAD . . . C 2 -34.982 -5.569 -79.929 1 82.22 ? C2B NAD 1721 A 1 HETATM 11 O O2B NAD . . . C 2 -35.547 -6.396 -78.934 1 81.91 ? O2B NAD 1721 A 1 HETATM 12 C C1B NAD . . . C 2 -34.928 -6.256 -81.302 1 81.88 ? C1B NAD 1721 A 1 HETATM 13 N N9A NAD . . . C 2 -33.678 -7.053 -81.538 1 80.59 ? N9A NAD 1721 A 1 HETATM 14 C C8A NAD . . . C 2 -32.388 -6.705 -81.189 1 80.33 ? C8A NAD 1721 A 1 HETATM 15 N N7A NAD . . . C 2 -31.522 -7.68 -81.574 1 79.71 ? N7A NAD 1721 A 1 HETATM 16 C C5A NAD . . . C 2 -32.237 -8.652 -82.164 1 79.57 ? C5A NAD 1721 A 1 HETATM 17 C C6A NAD . . . C 2 -31.855 -9.863 -82.727 1 80.17 ? C6A NAD 1721 A 1 HETATM 18 N N6A NAD . . . C 2 -30.532 -10.15 -82.787 1 79.9 ? N6A NAD 1721 A 1 HETATM 19 N N1A NAD . . . C 2 -32.801 -10.713 -83.29 1 80.8 ? N1A NAD 1721 A 1 HETATM 20 C C2A NAD . . . C 2 -34.142 -10.33 -83.273 1 80.7 ? C2A NAD 1721 A 1 HETATM 21 N N3A NAD . . . C 2 -34.514 -9.111 -82.698 1 80.31 ? N3A NAD 1721 A 1 HETATM 22 C C4A NAD . . . C 2 -33.586 -8.282 -82.152 1 79.57 ? C4A NAD 1721 A 1 HETATM 23 O O3 NAD . . . C 2 -36.603 0.206 -82.756 1 80.53 ? O3 NAD 1721 A 1 HETATM 24 P PN NAD . . . C 2 -37.534 0.242 -84.073 1 78.05 ? PN NAD 1721 A 1 HETATM 25 O O1N NAD . . . C 2 -38.267 1.525 -83.978 1 77.75 ? O1N NAD 1721 A 1 HETATM 26 O O2N NAD . . . C 2 -38.225 -1.063 -84.303 1 77.11 ? O2N NAD 1721 A 1 HETATM 27 O O5D NAD . . . C 2 -36.455 0.415 -85.242 1 78.51 ? O5D NAD 1721 A 1 HETATM 28 C C5D NAD . . . C 2 -35.797 -0.694 -85.817 1 78.96 ? C5D NAD 1721 A 1 HETATM 29 C C4D NAD . . . C 2 -34.782 -0.171 -86.825 1 78.87 ? C4D NAD 1721 A 1 HETATM 30 O O4D NAD . . . C 2 -35.436 0.638 -87.778 1 78.3 ? O4D NAD 1721 A 1 HETATM 31 C C3D NAD . . . C 2 -33.728 0.7 -86.16 1 79.63 ? C3D NAD 1721 A 1 HETATM 32 O O3D NAD . . . C 2 -32.471 0.359 -86.707 1 80.56 ? O3D NAD 1721 A 1 HETATM 33 C C2D NAD . . . C 2 -34.154 2.129 -86.482 1 79.58 ? C2D NAD 1721 A 1 HETATM 34 O O2D NAD . . . C 2 -33.087 3.057 -86.565 1 79.52 ? O2D NAD 1721 A 1 HETATM 35 C C1D NAD . . . C 2 -34.901 1.947 -87.798 1 79.37 ? C1D NAD 1721 A 1 HETATM 36 N N1N NAD . . . C 2 -35.987 2.929 -88.012 1 80.38 ? N1N NAD 1721 A 1 HETATM 37 C C2N NAD . . . C 2 -36.754 3.404 -86.96 1 79.69 ? C2N NAD 1721 A 1 HETATM 38 C C3N NAD . . . C 2 -37.769 4.336 -87.201 1 80.15 ? C3N NAD 1721 A 1 HETATM 39 C C7N NAD . . . C 2 -38.635 4.872 -86.088 1 81.28 ? C7N NAD 1721 A 1 HETATM 40 O O7N NAD . . . C 2 -38.743 6.269 -85.9 1 82.13 ? O7N NAD 1721 A 1 HETATM 41 N N7N NAD . . . C 2 -39.31 4.023 -85.303 1 81.25 ? N7N NAD 1721 A 1 HETATM 42 C C4N NAD . . . C 2 -37.987 4.769 -88.512 1 79.48 ? C4N NAD 1721 A 1 HETATM 43 C C5N NAD . . . C 2 -37.206 4.278 -89.565 1 79.24 ? C5N NAD 1721 A 1 HETATM 44 C C6N NAD . . . C 2 -36.202 3.352 -89.308 1 79.13 ? C6N NAD 1721 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 44 #