data_3ZW9 # _model_server_result.job_id A_kN5KUN-CM0glPigoPwbQ _model_server_result.datetime_utc '2024-11-25 08:54:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3zw9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1721}' # _entry.id 3ZW9 # _exptl.entry_id 3ZW9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 863.618 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2S,3S)-3-HYDROXY-2-METHYLBUTANOYL-COA _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3ZW9 _cell.length_a 65.592 _cell.length_b 126.652 _cell.length_c 225.432 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3ZW9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,J 1 1 B,F,G,H,I,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 H N N # _chem_comp.formula 'C26 H40 N7 O18 P3 S -4' _chem_comp.formula_weight 863.618 _chem_comp.id T1G _chem_comp.mon_nstd_flag . _chem_comp.name (2S,3S)-3-HYDROXY-2-METHYLBUTANOYL-COA _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 T1G doub 369 n y N1 C6 T1G sing 370 n y C2 N3 T1G sing 371 n y N3 C4 T1G doub 372 n y C4 C5 T1G sing 373 n y C4 N9 T1G sing 374 n y C5 C6 T1G doub 375 n y C5 N7 T1G sing 376 n y C6 N6 T1G sing 377 n n N7 C8 T1G doub 378 n y C8 N9 T1G sing 379 n y N9 C1' T1G sing 380 n n C1' C2' T1G sing 381 n n C1' O4' T1G sing 382 n n C2' O2' T1G sing 383 n n C2' C3' T1G sing 384 n n C3' O3' T1G sing 385 n n C3' C4' T1G sing 386 n n O3' PCA T1G sing 387 n n C4' O4' T1G sing 388 n n C4' C5' T1G sing 389 n n C5' O5' T1G sing 390 n n O5' PCB T1G sing 391 n n CAA CBR T1G sing 392 n n CAB CBS T1G sing 393 n n CAC CBZ T1G sing 394 n n CAD CBZ T1G sing 395 n n OAF CBL T1G doub 396 n n OAG CBM T1G doub 397 n n OAH CBN T1G doub 398 n n OAI PCA T1G doub 399 n n OAJ PCB T1G doub 400 n n OAK PCC T1G doub 401 n n OAL CBR T1G sing 402 n n OAM CBT T1G sing 403 n n OAO PCA T1G sing 404 n n OAP PCA T1G sing 405 n n OAQ PCB T1G sing 406 n n OAR PCC T1G sing 407 n n CAU CAW T1G sing 408 n n CAU NBD T1G sing 409 n n CAV CAX T1G sing 410 n n CAV NBE T1G sing 411 n n CAW SBK T1G sing 412 n n CAX CBL T1G sing 413 n n CAZ OBG T1G sing 414 n n CAZ CBZ T1G sing 415 n n NBD CBL T1G sing 416 n n NBE CBM T1G sing 417 n n OBG PCC T1G sing 418 n n OBJ PCB T1G sing 419 n n OBJ PCC T1G sing 420 n n SBK CBN T1G sing 421 n n CBM CBT T1G sing 422 n n CBN CBS T1G sing 423 n n CBR CBS T1G sing 424 n n CBT CBZ T1G sing 425 n n C2 H2 T1G sing 426 n n N6 HN6 T1G sing 427 n n N6 HN6A T1G sing 428 n n C8 H8 T1G sing 429 n n C1' H1' T1G sing 430 n n C2' H2' T1G sing 431 n n O2' HO2' T1G sing 432 n n C3' H3' T1G sing 433 n n C4' H4' T1G sing 434 n n C5' H5' T1G sing 435 n n C5' "H5'A" T1G sing 436 n n CAA HAA T1G sing 437 n n CAA HAAA T1G sing 438 n n CAA HAAB T1G sing 439 n n CAB HAB T1G sing 440 n n CAB HABA T1G sing 441 n n CAB HABB T1G sing 442 n n CAC HAC T1G sing 443 n n CAC HACA T1G sing 444 n n CAC HACB T1G sing 445 n n CAD HAD T1G sing 446 n n CAD HADA T1G sing 447 n n CAD HADB T1G sing 448 n n OAL HOAL T1G sing 449 n n OAM HOAM T1G sing 450 n n CAU HAU T1G sing 451 n n CAU HAUA T1G sing 452 n n CAV HAV T1G sing 453 n n CAV HAVA T1G sing 454 n n CAW HAW T1G sing 455 n n CAW HAWA T1G sing 456 n n CAX HAX T1G sing 457 n n CAX HAXA T1G sing 458 n n CAZ HAZ T1G sing 459 n n CAZ HAZA T1G sing 460 n n NBD HNBD T1G sing 461 n n NBE HNBE T1G sing 462 n n CBR HBR T1G sing 463 n n CBS HBS T1G sing 464 n n CBT HBT T1G sing 465 n n # _atom_sites.entry_id 3ZW9 _atom_sites.fract_transf_matrix[1][1] 0.015246 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007896 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004436 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAD A 1 1721 1721 NAD NAD . D 3 T1G A 1 1722 1722 T1G T1G . E 4 SO4 A 1 1723 1723 SO4 SO4 . F 2 NAD B 1 1719 1719 NAD NAD . G 4 SO4 B 1 1720 1720 SO4 SO4 . H 3 T1G B 1 1721 1721 T1G T1G . I 4 SO4 B 1 1722 1722 SO4 SO4 . J 5 HOH A 1 2001 2001 HOH HOH . J 5 HOH A 2 2002 2002 HOH HOH . J 5 HOH A 3 2003 2003 HOH HOH . J 5 HOH A 4 2004 2004 HOH HOH . J 5 HOH A 5 2005 2005 HOH HOH . J 5 HOH A 6 2006 2006 HOH HOH . J 5 HOH A 7 2007 2007 HOH HOH . J 5 HOH A 8 2008 2008 HOH HOH . J 5 HOH A 9 2009 2009 HOH HOH . J 5 HOH A 10 2010 2010 HOH HOH . J 5 HOH A 11 2011 2011 HOH HOH . J 5 HOH A 12 2012 2012 HOH HOH . J 5 HOH A 13 2013 2013 HOH HOH . J 5 HOH A 14 2014 2014 HOH HOH . J 5 HOH A 15 2015 2015 HOH HOH . J 5 HOH A 16 2016 2016 HOH HOH . J 5 HOH A 17 2017 2017 HOH HOH . J 5 HOH A 18 2018 2018 HOH HOH . J 5 HOH A 19 2019 2019 HOH HOH . J 5 HOH A 20 2020 2020 HOH HOH . J 5 HOH A 21 2021 2021 HOH HOH . J 5 HOH A 22 2022 2022 HOH HOH . J 5 HOH A 23 2023 2023 HOH HOH . J 5 HOH A 24 2024 2024 HOH HOH . J 5 HOH A 25 2025 2025 HOH HOH . J 5 HOH A 26 2026 2026 HOH HOH . J 5 HOH A 27 2027 2027 HOH HOH . J 5 HOH A 28 2028 2028 HOH HOH . J 5 HOH A 29 2029 2029 HOH HOH . J 5 HOH A 30 2030 2030 HOH HOH . J 5 HOH A 31 2031 2031 HOH HOH . J 5 HOH A 32 2032 2032 HOH HOH . J 5 HOH A 33 2033 2033 HOH HOH . J 5 HOH A 34 2034 2034 HOH HOH . J 5 HOH A 35 2035 2035 HOH HOH . J 5 HOH A 36 2036 2036 HOH HOH . J 5 HOH A 37 2037 2037 HOH HOH . J 5 HOH A 38 2038 2038 HOH HOH . J 5 HOH A 39 2039 2039 HOH HOH . J 5 HOH A 40 2040 2040 HOH HOH . J 5 HOH A 41 2041 2041 HOH HOH . J 5 HOH A 42 2042 2042 HOH HOH . J 5 HOH A 43 2043 2043 HOH HOH . J 5 HOH A 44 2044 2044 HOH HOH . J 5 HOH A 45 2045 2045 HOH HOH . J 5 HOH A 46 2046 2046 HOH HOH . J 5 HOH A 47 2047 2047 HOH HOH . J 5 HOH A 48 2048 2048 HOH HOH . J 5 HOH A 49 2049 2049 HOH HOH . J 5 HOH A 50 2050 2050 HOH HOH . J 5 HOH A 51 2051 2051 HOH HOH . J 5 HOH A 52 2052 2052 HOH HOH . J 5 HOH A 53 2053 2053 HOH HOH . J 5 HOH A 54 2054 2054 HOH HOH . J 5 HOH A 55 2055 2055 HOH HOH . J 5 HOH A 56 2056 2056 HOH HOH . J 5 HOH A 57 2057 2057 HOH HOH . J 5 HOH A 58 2058 2058 HOH HOH . J 5 HOH A 59 2059 2059 HOH HOH . J 5 HOH A 60 2060 2060 HOH HOH . J 5 HOH A 61 2061 2061 HOH HOH . J 5 HOH A 62 2062 2062 HOH HOH . J 5 HOH A 63 2063 2063 HOH HOH . J 5 HOH A 64 2064 2064 HOH HOH . J 5 HOH A 65 2065 2065 HOH HOH . J 5 HOH A 66 2066 2066 HOH HOH . K 5 HOH B 1 2001 2001 HOH HOH . K 5 HOH B 2 2002 2002 HOH HOH . K 5 HOH B 3 2003 2003 HOH HOH . K 5 HOH B 4 2004 2004 HOH HOH . K 5 HOH B 5 2005 2005 HOH HOH . K 5 HOH B 6 2006 2006 HOH HOH . K 5 HOH B 7 2007 2007 HOH HOH . K 5 HOH B 8 2008 2008 HOH HOH . K 5 HOH B 9 2009 2009 HOH HOH . K 5 HOH B 10 2010 2010 HOH HOH . K 5 HOH B 11 2011 2011 HOH HOH . K 5 HOH B 12 2012 2012 HOH HOH . K 5 HOH B 13 2013 2013 HOH HOH . K 5 HOH B 14 2014 2014 HOH HOH . K 5 HOH B 15 2015 2015 HOH HOH . K 5 HOH B 16 2016 2016 HOH HOH . K 5 HOH B 17 2017 2017 HOH HOH . K 5 HOH B 18 2018 2018 HOH HOH . K 5 HOH B 19 2019 2019 HOH HOH . K 5 HOH B 20 2020 2020 HOH HOH . K 5 HOH B 21 2021 2021 HOH HOH . K 5 HOH B 22 2022 2022 HOH HOH . K 5 HOH B 23 2023 2023 HOH HOH . K 5 HOH B 24 2024 2024 HOH HOH . K 5 HOH B 25 2025 2025 HOH HOH . K 5 HOH B 26 2026 2026 HOH HOH . K 5 HOH B 27 2027 2027 HOH HOH . K 5 HOH B 28 2028 2028 HOH HOH . K 5 HOH B 29 2029 2029 HOH HOH . K 5 HOH B 30 2030 2030 HOH HOH . K 5 HOH B 31 2031 2031 HOH HOH . K 5 HOH B 32 2032 2032 HOH HOH . K 5 HOH B 33 2033 2033 HOH HOH . K 5 HOH B 34 2034 2034 HOH HOH . K 5 HOH B 35 2035 2035 HOH HOH . K 5 HOH B 36 2036 2036 HOH HOH . K 5 HOH B 37 2037 2037 HOH HOH . K 5 HOH B 38 2038 2038 HOH HOH . K 5 HOH B 39 2039 2039 HOH HOH . K 5 HOH B 40 2040 2040 HOH HOH . K 5 HOH B 41 2041 2041 HOH HOH . K 5 HOH B 42 2042 2042 HOH HOH . K 5 HOH B 43 2043 2043 HOH HOH . K 5 HOH B 44 2044 2044 HOH HOH . K 5 HOH B 45 2045 2045 HOH HOH . K 5 HOH B 46 2046 2046 HOH HOH . K 5 HOH B 47 2047 2047 HOH HOH . K 5 HOH B 48 2048 2048 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 T1G . . . H 3 -43.5 20.441 -19.532 1 97.47 ? N1 T1G 1721 B 1 HETATM 2 C C2 T1G . . . H 3 -42.928 21.606 -19.242 1 97.83 ? C2 T1G 1721 B 1 HETATM 3 N N3 T1G . . . H 3 -42.811 22.571 -20.151 1 97.06 ? N3 T1G 1721 B 1 HETATM 4 C C4 T1G . . . H 3 -43.268 22.403 -21.4 1 96.59 ? C4 T1G 1721 B 1 HETATM 5 C C5 T1G . . . H 3 -43.871 21.207 -21.746 1 97.09 ? C5 T1G 1721 B 1 HETATM 6 C C6 T1G . . . H 3 -43.981 20.21 -20.768 1 97.48 ? C6 T1G 1721 B 1 HETATM 7 N N6 T1G . . . H 3 -44.546 19.032 -21.037 1 97.94 ? N6 T1G 1721 B 1 HETATM 8 N N7 T1G . . . H 3 -44.228 21.306 -23.028 1 96.67 ? N7 T1G 1721 B 1 HETATM 9 C C8 T1G . . . H 3 -43.871 22.507 -23.467 1 96.48 ? C8 T1G 1721 B 1 HETATM 10 N N9 T1G . . . H 3 -43.287 23.182 -22.47 1 96.84 ? N9 T1G 1721 B 1 HETATM 11 C C1' T1G . . . H 3 -42.721 24.559 -22.541 1 97.83 ? C1' T1G 1721 B 1 HETATM 12 C C2' T1G . . . H 3 -41.634 24.46 -23.623 1 98.31 ? C2' T1G 1721 B 1 HETATM 13 O O2' T1G . . . H 3 -40.361 24.142 -23.06 1 98.23 ? O2' T1G 1721 B 1 HETATM 14 C C3' T1G . . . H 3 -41.673 25.83 -24.323 1 98.82 ? C3' T1G 1721 B 1 HETATM 15 O O3' T1G . . . H 3 -40.399 26.541 -24.391 1 100.49 ? O3' T1G 1721 B 1 HETATM 16 C C4' T1G . . . H 3 -42.83 26.597 -23.649 1 98.1 ? C4' T1G 1721 B 1 HETATM 17 O O4' T1G . . . H 3 -43.645 25.578 -23.02 1 98.14 ? O4' T1G 1721 B 1 HETATM 18 C C5' T1G . . . H 3 -43.692 27.203 -24.757 1 97.39 ? C5' T1G 1721 B 1 HETATM 19 O O5' T1G . . . H 3 -44.071 26.197 -25.75 1 96.71 ? O5' T1G 1721 B 1 HETATM 20 C CAA T1G . . . H 3 -48.402 10.923 -16.758 1 72.01 ? CAA T1G 1721 B 1 HETATM 21 C CAB T1G . . . H 3 -46.261 11.93 -18.037 1 77.21 ? CAB T1G 1721 B 1 HETATM 22 C CAC T1G . . . H 3 -49.144 22.806 -27.61 1 93.2 ? CAC T1G 1721 B 1 HETATM 23 C CAD T1G . . . H 3 -48.345 24.139 -25.648 1 92.36 ? CAD T1G 1721 B 1 HETATM 24 O OAF T1G . . . H 3 -46.415 16.867 -25.02 1 89.41 ? OAF T1G 1721 B 1 HETATM 25 O OAG T1G . . . H 3 -47.102 20.775 -28.045 1 89.5 ? OAG T1G 1721 B 1 HETATM 26 O OAH T1G . . . H 3 -48.405 14.274 -19.184 1 84.1 ? OAH T1G 1721 B 1 HETATM 27 O OAI T1G . . . H 3 -39.686 28.801 -23.369 1 101.86 ? OAI T1G 1721 B 1 HETATM 28 O OAJ T1G . . . H 3 -42.657 24.813 -26.564 1 96.33 ? OAJ T1G 1721 B 1 HETATM 29 O OAK T1G . . . H 3 -46.244 26.619 -29.715 1 95.04 ? OAK T1G 1721 B 1 HETATM 30 O OAL T1G . . . H 3 -49.39 10.493 -18.924 1 70.87 ? OAL T1G 1721 B 1 HETATM 31 O OAM T1G . . . H 3 -45.708 23.458 -26.18 1 92.76 ? OAM T1G 1721 B 1 HETATM 32 O OAO T1G . . . H 3 -40.1 26.856 -21.728 1 100.92 ? OAO T1G 1721 B 1 HETATM 33 O OAP T1G . . . H 3 -38.025 26.807 -23.34 1 100.59 ? OAP T1G 1721 B 1 HETATM 34 O OAQ T1G . . . H 3 -43.004 27.516 -26.973 1 96.05 ? OAQ T1G 1721 B 1 HETATM 35 O OAR T1G . . . H 3 -45.922 28.13 -27.573 1 95.06 ? OAR T1G 1721 B 1 HETATM 36 C CAU T1G . . . H 3 -47.24 16.298 -22.327 1 88.39 ? CAU T1G 1721 B 1 HETATM 37 C CAV T1G . . . H 3 -46.231 19.458 -25.776 1 89.58 ? CAV T1G 1721 B 1 HETATM 38 C CAW T1G . . . H 3 -46.559 15.607 -21.133 1 86.81 ? CAW T1G 1721 B 1 HETATM 39 C CAX T1G . . . H 3 -45.576 19.019 -24.471 1 89.3 ? CAX T1G 1721 B 1 HETATM 40 C CAZ T1G . . . H 3 -48.051 24.899 -28.066 1 94.57 ? CAZ T1G 1721 B 1 HETATM 41 N NBD T1G . . . H 3 -46.542 17.507 -22.825 1 89.54 ? NBD T1G 1721 B 1 HETATM 42 N NBE T1G . . . H 3 -46.232 20.909 -25.959 1 89.94 ? NBE T1G 1721 B 1 HETATM 43 O OBG T1G . . . H 3 -47.556 26.148 -27.53 1 96.13 ? OBG T1G 1721 B 1 HETATM 44 O OBJ T1G . . . H 3 -45.004 25.7 -27.571 1 95.76 ? OBJ T1G 1721 B 1 HETATM 45 S SBK T1G . . . H 3 -46.85 13.778 -21.179 1 87.31 ? SBK T1G 1721 B 1 HETATM 46 C CBL T1G . . . H 3 -46.211 17.683 -24.118 1 89.66 ? CBL T1G 1721 B 1 HETATM 47 C CBM T1G . . . H 3 -46.696 21.442 -27.092 1 90.9 ? CBM T1G 1721 B 1 HETATM 48 C CBN T1G . . . H 3 -47.688 13.38 -19.643 1 82.56 ? CBN T1G 1721 B 1 HETATM 49 C CBR T1G . . . H 3 -48.739 11.481 -18.152 1 73.97 ? CBR T1G 1721 B 1 HETATM 50 C CBS T1G . . . H 3 -47.505 11.969 -18.939 1 77.74 ? CBS T1G 1721 B 1 HETATM 51 C CBT T1G . . . H 3 -46.632 22.984 -27.181 1 92.15 ? CBT T1G 1721 B 1 HETATM 52 C CBZ T1G . . . H 3 -48.022 23.698 -27.092 1 93 ? CBZ T1G 1721 B 1 HETATM 53 P PCA T1G . . . H 3 -39.462 27.199 -23.2 1 102.05 ? PCA T1G 1721 B 1 HETATM 54 P PCB T1G . . . H 3 -43.432 26.091 -27.253 1 96.06 ? PCB T1G 1721 B 1 HETATM 55 P PCC T1G . . . H 3 -46.135 26.751 -28.08 1 96 ? PCC T1G 1721 B 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 55 #