data_3ZX7 # _model_server_result.job_id EdVkwaqzW7sSHMo9-cwYhw _model_server_result.datetime_utc '2024-12-21 11:37:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3zx7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":905}' # _entry.id 3ZX7 # _exptl.entry_id 3ZX7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3ZX7 _cell.length_a 98.11 _cell.length_b 98.11 _cell.length_c 184.17 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3ZX7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 H N N ? 4 I N N ? 4 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLY 42 A GLY 43 1_555 A N MSE 43 A MSE 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? covale ? covale2 A C MSE 43 A MSE 44 1_555 A N LYS 44 A LYS 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? covale ? covale3 A C SER 88 A SER 89 1_555 A N MSE 89 A MSE 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? covale ? covale4 A C MSE 89 A MSE 90 1_555 A N THR 90 A THR 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale5 A C TYR 128 A TYR 129 1_555 A N MSE 129 A MSE 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.363 ? covale ? covale6 A C MSE 129 A MSE 130 1_555 A N TYR 130 A TYR 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale7 A C TYR 177 A TYR 178 1_555 A N MSE 178 A MSE 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale8 A C MSE 178 A MSE 179 1_555 A N THR 179 A THR 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale9 A C THR 215 A THR 216 1_555 A N MSE 216 A MSE 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale10 A C MSE 216 A MSE 217 1_555 A N TYR 217 A TYR 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.352 ? covale ? covale11 A C PHE 260 A PHE 261 1_555 A N MSE 261 A MSE 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale12 A C MSE 261 A MSE 262 1_555 A N ASN 262 A ASN 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? metalc ? metalc1 A OD2 ASP 234 A ASP 235 1_555 J NA NA . A NA 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.009 ? metalc ? metalc2 A O GLY 275 A GLY 276 1_555 I NA NA . A NA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.987 ? metalc ? metalc3 E O1 PO4 . A PO4 884 1_555 H NA NA . A NA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.966 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3ZX7 _atom_sites.fract_transf_matrix[1][1] 0.010193 _atom_sites.fract_transf_matrix[1][2] 0.005885 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011769 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00543 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 A 1 881 881 PO4 PO4 . C 2 PO4 A 1 882 882 PO4 PO4 . D 2 PO4 A 1 883 883 PO4 PO4 . E 2 PO4 A 1 884 884 PO4 PO4 . F 2 PO4 A 1 888 888 PO4 PO4 . G 3 PC A 1 900 900 PC PC . H 4 NA A 1 903 903 NA NA . I 4 NA A 1 904 904 NA NA . J 4 NA A 1 905 905 NA NA . K 3 PC A 1 990 990 PC PC . L 3 PC A 1 991 991 PC PC . M 3 PC A 1 992 992 PC PC . N 5 HOH A 1 2001 2001 HOH HOH . N 5 HOH A 2 2002 2002 HOH HOH . N 5 HOH A 3 2003 2003 HOH HOH . N 5 HOH A 4 2007 2007 HOH HOH . N 5 HOH A 5 2009 2009 HOH HOH . N 5 HOH A 6 2012 2012 HOH HOH . N 5 HOH A 7 2013 2013 HOH HOH . N 5 HOH A 8 2014 2014 HOH HOH . N 5 HOH A 9 2016 2016 HOH HOH . N 5 HOH A 10 2019 2019 HOH HOH . N 5 HOH A 11 2021 2021 HOH HOH . N 5 HOH A 12 2022 2022 HOH HOH . N 5 HOH A 13 2025 2025 HOH HOH . N 5 HOH A 14 2026 2026 HOH HOH . N 5 HOH A 15 2028 2028 HOH HOH . N 5 HOH A 16 2029 2029 HOH HOH . N 5 HOH A 17 2031 2031 HOH HOH . N 5 HOH A 18 2034 2034 HOH HOH . N 5 HOH A 19 2035 2035 HOH HOH . N 5 HOH A 20 2038 2038 HOH HOH . N 5 HOH A 21 2039 2039 HOH HOH . N 5 HOH A 22 2041 2041 HOH HOH . N 5 HOH A 23 2047 2047 HOH HOH . N 5 HOH A 24 2048 2048 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id J _atom_site.label_entity_id 4 _atom_site.Cartn_x -4.628 _atom_site.Cartn_y 9.051 _atom_site.Cartn_z 1.531 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 50.34 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 905 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #