data_3ZXD
#
_model_server_result.job_id            2CdopNSLYzw1ijTl6mc80g 
_model_server_result.datetime_utc      '2024-12-30 17:31:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3zxd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":500}' 
#
_entry.id    3ZXD 
#
_exptl.entry_id    3ZXD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         98.88 
_cell.angle_beta          96.84 
_cell.angle_gamma         90.04 
_cell.entry_id            3ZXD 
_cell.length_a            58.91 
_cell.length_b            85.56 
_cell.length_c            108.81 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3ZXD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
PISA monomeric 1 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F,G,H,I,J,K,L,M,N,CA 1 1 
B,O,P,Q,R,S,T,U,DA 2 1 
C,V,W,X,EA 3 1 
D,Y,Z,AA,BA 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 K N N 
? 4 L N N 
? 4 M N N 
? 4 T N N 
? 4 AA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 14 A ASP 15 1_555 L NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.868 ? 
metalc ? metalc2 A O ALA 17 A ALA 18 1_555 G NA NA . A NA 467 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.167 ? 
metalc ? metalc3 A OG SER 150 A SER 151 1_555 G NA NA . A NA 467 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.03 ? 
metalc ? metalc4 A OE2 GLU 173 A GLU 174 1_555 M NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? 
metalc ? metalc5 H O3 SO4 . A SO4 468 1_555 J MG MG . A MG 470 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? 
metalc ? metalc6 B O ALA 17 B ALA 18 1_555 T NA NA . B NA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.2 ? 
metalc ? metalc7 B OE1 GLU 75 B GLU 76 1_455 X MG MG . C MG 547 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? 
metalc ? metalc8 B OE2 GLU 75 B GLU 76 1_455 X MG MG . C MG 547 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.877 ? 
metalc ? metalc9 O O3 SO4 . B SO4 465 1_555 Q MG MG . B MG 470 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? 
metalc ? metalc10 C OD1 ASP 256 C ASP 257 1_555 W MG MG . C MG 546 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? 
metalc ? metalc11 Y O3 SO4 . D SO4 467 1_555 Z MG MG . D MG 470 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3ZXD 
_atom_sites.fract_transf_matrix[1][1]    0.016975 
_atom_sites.fract_transf_matrix[1][2]    0.000012 
_atom_sites.fract_transf_matrix[1][3]    0.002063 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011688 
_atom_sites.fract_transf_matrix[2][3]    0.00184 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00937 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 GOL A 1 398 398 GOL GOL . 
F 3 SO4 A 1 466 466 SO4 SO4 . 
G 4 NA A 1 467 467 NA NA . 
H 3 SO4 A 1 468 468 SO4 SO4 . 
I 5 CL A 1 469 469 CL CL . 
J 6 MG A 1 470 470 MG MG . 
K 4 NA A 1 500 500 NA NA . 
L 4 NA A 1 501 501 NA NA . 
M 4 NA A 1 502 502 NA NA . 
N 7 MES A 1 921 921 MES MES . 
O 3 SO4 B 1 465 465 SO4 SO4 . 
P 3 SO4 B 1 468 468 SO4 SO4 . 
Q 6 MG B 1 470 470 MG MG . 
R 6 MG B 1 472 472 MG MG . 
S 3 SO4 B 1 473 473 SO4 SO4 . 
T 4 NA B 1 500 500 NA NA . 
U 7 MES B 1 921 921 MES MES . 
V 2 GOL C 1 398 398 GOL GOL . 
W 6 MG C 1 546 546 MG MG . 
X 6 MG C 1 547 547 MG MG . 
Y 3 SO4 D 1 467 467 SO4 SO4 . 
Z 6 MG D 1 470 470 MG MG . 
AA 4 NA D 1 500 500 NA NA . 
BA 7 MES D 1 921 921 MES MES . 
CA 8 HOH A 1 2001 2001 HOH HOH . 
CA 8 HOH A 2 2005 2005 HOH HOH . 
CA 8 HOH A 3 2009 2009 HOH HOH . 
DA 8 HOH B 1 2002 2002 HOH HOH . 
DA 8 HOH B 2 2006 2006 HOH HOH . 
DA 8 HOH B 3 2007 2007 HOH HOH . 
DA 8 HOH B 4 2010 2010 HOH HOH . 
EA 8 HOH C 1 2002 2002 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         K 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               -30.66 
_atom_site.Cartn_y               15.471 
_atom_site.Cartn_z               -19.551 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        59.57 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           500 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              24 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    22 
_model_server_stats.query_time_ms           330 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           1 
#