data_3ZXD # _model_server_result.job_id RgyeqfHX6SasSQscy587_g _model_server_result.datetime_utc '2024-12-21 15:41:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3zxd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"BA","auth_seq_id":921}' # _entry.id 3ZXD # _exptl.entry_id 3ZXD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 195.237 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 98.88 _cell.angle_beta 96.84 _cell.angle_gamma 90.04 _cell.entry_id 3ZXD _cell.length_a 58.91 _cell.length_b 85.56 _cell.length_c 108.81 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3ZXD _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,G,H,I,J,K,L,M,N,CA 1 1 B,O,P,Q,R,S,T,U,DA 2 1 C,V,W,X,EA 3 1 D,Y,Z,AA,BA 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 N N N ? 7 U N N ? 7 BA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 14 A ASP 15 1_555 L NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.868 ? metalc ? metalc2 A O ALA 17 A ALA 18 1_555 G NA NA . A NA 467 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.167 ? metalc ? metalc3 A OG SER 150 A SER 151 1_555 G NA NA . A NA 467 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.03 ? metalc ? metalc4 A OE2 GLU 173 A GLU 174 1_555 M NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? metalc ? metalc5 H O3 SO4 . A SO4 468 1_555 J MG MG . A MG 470 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? metalc ? metalc6 B O ALA 17 B ALA 18 1_555 T NA NA . B NA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.2 ? metalc ? metalc7 B OE1 GLU 75 B GLU 76 1_455 X MG MG . C MG 547 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? metalc ? metalc8 B OE2 GLU 75 B GLU 76 1_455 X MG MG . C MG 547 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.877 ? metalc ? metalc9 O O3 SO4 . B SO4 465 1_555 Q MG MG . B MG 470 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? metalc ? metalc10 C OD1 ASP 256 C ASP 257 1_555 W MG MG . C MG 546 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? metalc ? metalc11 Y O3 SO4 . D SO4 467 1_555 Z MG MG . D MG 470 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? # _chem_comp.formula 'C6 H13 N O4 S' _chem_comp.formula_weight 195.237 _chem_comp.id MES _chem_comp.mon_nstd_flag . _chem_comp.name '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C2 MES sing 231 n n O1 C6 MES sing 232 n n C2 C3 MES sing 233 n n C2 H21 MES sing 234 n n C2 H22 MES sing 235 n n C3 N4 MES sing 236 n n C3 H31 MES sing 237 n n C3 H32 MES sing 238 n n N4 C5 MES sing 239 n n N4 C7 MES sing 240 n n N4 HN4 MES sing 241 n n C5 C6 MES sing 242 n n C5 H51 MES sing 243 n n C5 H52 MES sing 244 n n C6 H61 MES sing 245 n n C6 H62 MES sing 246 n n C7 C8 MES sing 247 n n C7 H71 MES sing 248 n n C7 H72 MES sing 249 n n C8 S MES sing 250 n n C8 H81 MES sing 251 n n C8 H82 MES sing 252 n n S O1S MES doub 253 n n S O2S MES doub 254 n n S O3S MES sing 255 n n # _atom_sites.entry_id 3ZXD _atom_sites.fract_transf_matrix[1][1] 0.016975 _atom_sites.fract_transf_matrix[1][2] 0.000012 _atom_sites.fract_transf_matrix[1][3] 0.002063 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011688 _atom_sites.fract_transf_matrix[2][3] 0.00184 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00937 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 GOL A 1 398 398 GOL GOL . F 3 SO4 A 1 466 466 SO4 SO4 . G 4 NA A 1 467 467 NA NA . H 3 SO4 A 1 468 468 SO4 SO4 . I 5 CL A 1 469 469 CL CL . J 6 MG A 1 470 470 MG MG . K 4 NA A 1 500 500 NA NA . L 4 NA A 1 501 501 NA NA . M 4 NA A 1 502 502 NA NA . N 7 MES A 1 921 921 MES MES . O 3 SO4 B 1 465 465 SO4 SO4 . P 3 SO4 B 1 468 468 SO4 SO4 . Q 6 MG B 1 470 470 MG MG . R 6 MG B 1 472 472 MG MG . S 3 SO4 B 1 473 473 SO4 SO4 . T 4 NA B 1 500 500 NA NA . U 7 MES B 1 921 921 MES MES . V 2 GOL C 1 398 398 GOL GOL . W 6 MG C 1 546 546 MG MG . X 6 MG C 1 547 547 MG MG . Y 3 SO4 D 1 467 467 SO4 SO4 . Z 6 MG D 1 470 470 MG MG . AA 4 NA D 1 500 500 NA NA . BA 7 MES D 1 921 921 MES MES . CA 8 HOH A 1 2001 2001 HOH HOH . CA 8 HOH A 2 2005 2005 HOH HOH . CA 8 HOH A 3 2009 2009 HOH HOH . DA 8 HOH B 1 2002 2002 HOH HOH . DA 8 HOH B 2 2006 2006 HOH HOH . DA 8 HOH B 3 2007 2007 HOH HOH . DA 8 HOH B 4 2010 2010 HOH HOH . EA 8 HOH C 1 2002 2002 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 MES . . . BA 7 12.634 18.823 -51.62 1 134.78 ? O1 MES 921 D 1 HETATM 2 C C2 MES . . . BA 7 11.434 18.072 -51.44 1 136.25 ? C2 MES 921 D 1 HETATM 3 C C3 MES . . . BA 7 11.759 16.638 -51.016 1 137.87 ? C3 MES 921 D 1 HETATM 4 N N4 MES . . . BA 7 12.502 16.672 -49.743 1 138.34 ? N4 MES 921 D 1 HETATM 5 C C5 MES . . . BA 7 13.71 17.51 -49.887 1 136.42 ? C5 MES 921 D 1 HETATM 6 C C6 MES . . . BA 7 13.306 18.909 -50.364 1 134.81 ? C6 MES 921 D 1 HETATM 7 C C7 MES . . . BA 7 12.826 15.301 -49.294 1 140.91 ? C7 MES 921 D 1 HETATM 8 C C8 MES . . . BA 7 14.329 15.112 -49.065 1 141.31 ? C8 MES 921 D 1 HETATM 9 S S MES . . . BA 7 14.678 13.415 -48.522 1 143.97 ? S MES 921 D 1 HETATM 10 O O1S MES . . . BA 7 13.439 12.657 -48.448 1 146.05 ? O1S MES 921 D 1 HETATM 11 O O2S MES . . . BA 7 15.305 13.451 -47.207 1 144.42 ? O2S MES 921 D 1 HETATM 12 O O3S MES . . . BA 7 15.581 12.784 -49.473 1 143.69 ? O3S MES 921 D 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 49 _model_server_stats.query_time_ms 349 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 12 #