data_3ZXD
#
_model_server_result.job_id            nFTJdgClyj-TGD1j8nti5w 
_model_server_result.datetime_utc      '2024-12-21 16:16:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3zxd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"U","auth_seq_id":921}' 
#
_entry.id    3ZXD 
#
_exptl.entry_id    3ZXD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              195.237 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         98.88 
_cell.angle_beta          96.84 
_cell.angle_gamma         90.04 
_cell.entry_id            3ZXD 
_cell.length_a            58.91 
_cell.length_b            85.56 
_cell.length_c            108.81 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3ZXD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
PISA monomeric 1 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F,G,H,I,J,K,L,M,N,CA 1 1 
B,O,P,Q,R,S,T,U,DA 2 1 
C,V,W,X,EA 3 1 
D,Y,Z,AA,BA 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 7 N N N 
? 7 U N N 
? 7 BA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 14 A ASP 15 1_555 L NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.868 ? 
metalc ? metalc2 A O ALA 17 A ALA 18 1_555 G NA NA . A NA 467 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.167 ? 
metalc ? metalc3 A OG SER 150 A SER 151 1_555 G NA NA . A NA 467 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.03 ? 
metalc ? metalc4 A OE2 GLU 173 A GLU 174 1_555 M NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? 
metalc ? metalc5 H O3 SO4 . A SO4 468 1_555 J MG MG . A MG 470 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? 
metalc ? metalc6 B O ALA 17 B ALA 18 1_555 T NA NA . B NA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.2 ? 
metalc ? metalc7 B OE1 GLU 75 B GLU 76 1_455 X MG MG . C MG 547 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? 
metalc ? metalc8 B OE2 GLU 75 B GLU 76 1_455 X MG MG . C MG 547 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.877 ? 
metalc ? metalc9 O O3 SO4 . B SO4 465 1_555 Q MG MG . B MG 470 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? 
metalc ? metalc10 C OD1 ASP 256 C ASP 257 1_555 W MG MG . C MG 546 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? 
metalc ? metalc11 Y O3 SO4 . D SO4 467 1_555 Z MG MG . D MG 470 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? 
#
_chem_comp.formula           'C6 H13 N O4 S' 
_chem_comp.formula_weight    195.237 
_chem_comp.id                MES 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 C2 MES sing 231 n n 
O1 C6 MES sing 232 n n 
C2 C3 MES sing 233 n n 
C2 H21 MES sing 234 n n 
C2 H22 MES sing 235 n n 
C3 N4 MES sing 236 n n 
C3 H31 MES sing 237 n n 
C3 H32 MES sing 238 n n 
N4 C5 MES sing 239 n n 
N4 C7 MES sing 240 n n 
N4 HN4 MES sing 241 n n 
C5 C6 MES sing 242 n n 
C5 H51 MES sing 243 n n 
C5 H52 MES sing 244 n n 
C6 H61 MES sing 245 n n 
C6 H62 MES sing 246 n n 
C7 C8 MES sing 247 n n 
C7 H71 MES sing 248 n n 
C7 H72 MES sing 249 n n 
C8 S MES sing 250 n n 
C8 H81 MES sing 251 n n 
C8 H82 MES sing 252 n n 
S O1S MES doub 253 n n 
S O2S MES doub 254 n n 
S O3S MES sing 255 n n 
#
_atom_sites.entry_id                     3ZXD 
_atom_sites.fract_transf_matrix[1][1]    0.016975 
_atom_sites.fract_transf_matrix[1][2]    0.000012 
_atom_sites.fract_transf_matrix[1][3]    0.002063 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011688 
_atom_sites.fract_transf_matrix[2][3]    0.00184 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00937 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 GOL A 1 398 398 GOL GOL . 
F 3 SO4 A 1 466 466 SO4 SO4 . 
G 4 NA A 1 467 467 NA NA . 
H 3 SO4 A 1 468 468 SO4 SO4 . 
I 5 CL A 1 469 469 CL CL . 
J 6 MG A 1 470 470 MG MG . 
K 4 NA A 1 500 500 NA NA . 
L 4 NA A 1 501 501 NA NA . 
M 4 NA A 1 502 502 NA NA . 
N 7 MES A 1 921 921 MES MES . 
O 3 SO4 B 1 465 465 SO4 SO4 . 
P 3 SO4 B 1 468 468 SO4 SO4 . 
Q 6 MG B 1 470 470 MG MG . 
R 6 MG B 1 472 472 MG MG . 
S 3 SO4 B 1 473 473 SO4 SO4 . 
T 4 NA B 1 500 500 NA NA . 
U 7 MES B 1 921 921 MES MES . 
V 2 GOL C 1 398 398 GOL GOL . 
W 6 MG C 1 546 546 MG MG . 
X 6 MG C 1 547 547 MG MG . 
Y 3 SO4 D 1 467 467 SO4 SO4 . 
Z 6 MG D 1 470 470 MG MG . 
AA 4 NA D 1 500 500 NA NA . 
BA 7 MES D 1 921 921 MES MES . 
CA 8 HOH A 1 2001 2001 HOH HOH . 
CA 8 HOH A 2 2005 2005 HOH HOH . 
CA 8 HOH A 3 2009 2009 HOH HOH . 
DA 8 HOH B 1 2002 2002 HOH HOH . 
DA 8 HOH B 2 2006 2006 HOH HOH . 
DA 8 HOH B 3 2007 2007 HOH HOH . 
DA 8 HOH B 4 2010 2010 HOH HOH . 
EA 8 HOH C 1 2002 2002 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 MES . . . U 7 33.199 -16.273 -17.893 1 63.09 ? O1 MES 921 B 1 
HETATM 2 C C2 MES . . . U 7 32.016 -17.055 -17.755 1 64.21 ? C2 MES 921 B 1 
HETATM 3 C C3 MES . . . U 7 30.852 -16.151 -17.362 1 64.79 ? C3 MES 921 B 1 
HETATM 4 N N4 MES . . . U 7 30.656 -15.156 -18.427 1 64.38 ? N4 MES 921 B 1 
HETATM 5 C C5 MES . . . U 7 31.903 -14.402 -18.625 1 61.96 ? C5 MES 921 B 1 
HETATM 6 C C6 MES . . . U 7 33.013 -15.369 -18.983 1 61.21 ? C6 MES 921 B 1 
HETATM 7 C C7 MES . . . U 7 29.541 -14.267 -18.06 1 67.82 ? C7 MES 921 B 1 
HETATM 8 C C8 MES . . . U 7 30.015 -12.812 -17.964 1 68.63 ? C8 MES 921 B 1 
HETATM 9 S S MES . . . U 7 28.634 -11.745 -17.496 1 70.97 ? S MES 921 B 1 
HETATM 10 O O1S MES . . . U 7 29.097 -10.364 -17.403 1 70.27 ? O1S MES 921 B 1 
HETATM 11 O O2S MES . . . U 7 28.121 -12.17 -16.201 1 73.02 ? O2S MES 921 B 1 
HETATM 12 O O3S MES . . . U 7 27.586 -11.846 -18.504 1 71.61 ? O3S MES 921 B 1 
#
_model_server_stats.io_time_ms              23 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           272 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           12 
#