data_3ZXG # _model_server_result.job_id fQ6A-C3Z6jinesVWxy2i9g _model_server_result.datetime_utc '2024-10-18 12:19:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3zxg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":943}' # _entry.id 3ZXG # _exptl.entry_id 3ZXG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 537.733 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description TRIMETHYL-[2-[[(2S,3S)-2-(OCTADECANOYLAMINO)-3-OXIDANYL-BUTOXY]-OXIDANYL-PHOSPHORYL]OXYETHYL]AZANIUM _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.03 _cell.angle_gamma 90 _cell.entry_id 3ZXG _cell.length_a 211.15 _cell.length_b 37.2 _cell.length_c 96.74 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3ZXG _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,G 1 1 B,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C27 H58 N2 O6 P 1' _chem_comp.formula_weight 537.733 _chem_comp.id 0SM _chem_comp.mon_nstd_flag . _chem_comp.name TRIMETHYL-[2-[[(2S,3S)-2-(OCTADECANOYLAMINO)-3-OXIDANYL-BUTOXY]-OXIDANYL-PHOSPHORYL]OXYETHYL]AZANIUM _chem_comp.type non-polymer _chem_comp.pdbx_synonyms N-OCTADECANOYL-D-ERYTHRO-SPHINGOSYLPHOSPHORYLCHOLINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O3P 0SM sing 1 n n C1 CBV 0SM sing 2 n n C3 CBU 0SM sing 3 n n C4 C5 0SM sing 4 n n C4 O4P 0SM sing 5 n n C5 N 0SM sing 6 n n C6 N 0SM sing 7 n n C7 N 0SM sing 8 n n C8 N 0SM sing 9 n n C11 C12 0SM sing 10 n n C11 O11 0SM doub 11 n n C11 NBQ 0SM sing 12 n n C12 C13 0SM sing 13 n n C13 C14 0SM sing 14 n n C14 C15 0SM sing 15 n n C15 C16 0SM sing 16 n n C16 C17 0SM sing 17 n n C17 C18 0SM sing 18 n n C18 C19 0SM sing 19 n n C19 C20 0SM sing 20 n n C20 C21 0SM sing 21 n n C21 C22 0SM sing 22 n n C22 C23 0SM sing 23 n n C23 C24 0SM sing 24 n n C24 C25 0SM sing 25 n n C25 C26 0SM sing 26 n n C26 C27 0SM sing 27 n n C27 C28 0SM sing 28 n n O2 CBU 0SM sing 29 n n O1P P 0SM sing 30 n n O2P P 0SM doub 31 n n O3P P 0SM sing 32 n n O4P P 0SM sing 33 n n NBQ CBV 0SM sing 34 n n CBV CBU 0SM sing 35 n n C1 H11C 0SM sing 36 n n C1 H12C 0SM sing 37 n n CBV HBV 0SM sing 38 n n C3 H31C 0SM sing 39 n n C3 H32C 0SM sing 40 n n C3 H33C 0SM sing 41 n n CBU HBU 0SM sing 42 n n C4 H41C 0SM sing 43 n n C4 H42C 0SM sing 44 n n C5 H51C 0SM sing 45 n n C5 H52C 0SM sing 46 n n C6 H61C 0SM sing 47 n n C6 H62C 0SM sing 48 n n C6 H63C 0SM sing 49 n n C7 H71C 0SM sing 50 n n C7 H72C 0SM sing 51 n n C7 H73C 0SM sing 52 n n C8 H81C 0SM sing 53 n n C8 H82C 0SM sing 54 n n C8 H83C 0SM sing 55 n n C12 H121 0SM sing 56 n n C12 H122 0SM sing 57 n n NBQ HBQ 0SM sing 58 n n C13 H131 0SM sing 59 n n C13 H132 0SM sing 60 n n C14 H141 0SM sing 61 n n C14 H142 0SM sing 62 n n C15 H151 0SM sing 63 n n C15 H152 0SM sing 64 n n C16 H161 0SM sing 65 n n C16 H162 0SM sing 66 n n C17 H171 0SM sing 67 n n C17 H172 0SM sing 68 n n C18 H181 0SM sing 69 n n C18 H182 0SM sing 70 n n C19 H191 0SM sing 71 n n C19 H192 0SM sing 72 n n C20 H201 0SM sing 73 n n C20 H202 0SM sing 74 n n C21 H211 0SM sing 75 n n C21 H212 0SM sing 76 n n C22 H221 0SM sing 77 n n C22 H222 0SM sing 78 n n C23 H231 0SM sing 79 n n C23 H232 0SM sing 80 n n C24 H241 0SM sing 81 n n C24 H242 0SM sing 82 n n C25 H251 0SM sing 83 n n C25 H252 0SM sing 84 n n C26 H261 0SM sing 85 n n C26 H262 0SM sing 86 n n C27 H271 0SM sing 87 n n C27 H272 0SM sing 88 n n C28 H281 0SM sing 89 n n C28 H282 0SM sing 90 n n C28 H283 0SM sing 91 n n O2 H2 0SM sing 92 n n O1P H1P 0SM sing 93 n n # _atom_sites.entry_id 3ZXG _atom_sites.fract_transf_matrix[1][1] 0.004736 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001183 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.026882 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010655 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 898 898 SO4 SO4 . D 2 SO4 A 1 899 899 SO4 SO4 . E 3 0SM A 1 943 943 0SM 0SM . F 2 SO4 B 1 898 898 SO4 SO4 . G 4 HOH A 1 2001 2001 HOH HOH . G 4 HOH A 2 2002 2002 HOH HOH . G 4 HOH A 3 2003 2003 HOH HOH . G 4 HOH A 4 2004 2004 HOH HOH . H 4 HOH B 1 2001 2001 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 0SM . . . E 3 -5.857 -35.448 10.049 1 123.29 ? C1 0SM 943 A 1 HETATM 2 C C3 0SM . . . E 3 -4.224 -38.439 10.709 1 113.62 ? C3 0SM 943 A 1 HETATM 3 C C4 0SM . . . E 3 -0.975 -34.062 9.979 1 141.7 ? C4 0SM 943 A 1 HETATM 4 C C5 0SM . . . E 3 -0.289 -32.78 9.451 1 141.3 ? C5 0SM 943 A 1 HETATM 5 C C6 0SM . . . E 3 1.899 -31.844 10.014 1 139.66 ? C6 0SM 943 A 1 HETATM 6 C C7 0SM . . . E 3 1.52 -32.521 7.762 1 139.57 ? C7 0SM 943 A 1 HETATM 7 C C8 0SM . . . E 3 1.702 -34.156 9.482 1 139.64 ? C8 0SM 943 A 1 HETATM 8 C C11 0SM . . . E 3 -8.849 -37.538 10.091 1 99.19 ? C11 0SM 943 A 1 HETATM 9 C C12 0SM . . . E 3 -9.337 -38.789 10.876 1 94.86 ? C12 0SM 943 A 1 HETATM 10 C C13 0SM . . . E 3 -10.51 -39.464 10.164 1 91.36 ? C13 0SM 943 A 1 HETATM 11 C C14 0SM . . . E 3 -11.56 -40.042 11.11 1 87.54 ? C14 0SM 943 A 1 HETATM 12 C C15 0SM . . . E 3 -12.352 -41.138 10.39 1 84.36 ? C15 0SM 943 A 1 HETATM 13 C C16 0SM . . . E 3 -13.807 -40.738 10.16 1 81.17 ? C16 0SM 943 A 1 HETATM 14 C C17 0SM . . . E 3 -14.734 -41.311 11.239 1 80.51 ? C17 0SM 943 A 1 HETATM 15 C C18 0SM . . . E 3 -15.151 -42.739 10.889 1 79.38 ? C18 0SM 943 A 1 HETATM 16 C C19 0SM . . . E 3 -16.205 -43.329 11.853 1 77.38 ? C19 0SM 943 A 1 HETATM 17 C C20 0SM . . . E 3 -17.227 -44.108 11.024 1 76.85 ? C20 0SM 943 A 1 HETATM 18 C C21 0SM . . . E 3 -17.827 -45.327 11.745 1 77.46 ? C21 0SM 943 A 1 HETATM 19 C C22 0SM . . . E 3 -19.316 -45.171 12.091 1 76.14 ? C22 0SM 943 A 1 HETATM 20 C C23 0SM . . . E 3 -20.004 -46.539 12.042 1 71.73 ? C23 0SM 943 A 1 HETATM 21 C C24 0SM . . . E 3 -20.889 -46.763 13.265 1 70.82 ? C24 0SM 943 A 1 HETATM 22 C C25 0SM . . . E 3 -20.193 -47.727 14.23 1 71.69 ? C25 0SM 943 A 1 HETATM 23 C C26 0SM . . . E 3 -20.481 -47.414 15.711 1 68.73 ? C26 0SM 943 A 1 HETATM 24 C C27 0SM . . . E 3 -21.806 -48.047 16.156 1 65.63 ? C27 0SM 943 A 1 HETATM 25 C C28 0SM . . . E 3 -22.389 -47.299 17.35 1 64.29 ? C28 0SM 943 A 1 HETATM 26 N N 0SM . . . E 3 1.173 -32.807 9.161 1 140.08 ? N 0SM 943 A 1 HETATM 27 O O2 0SM . . . E 3 -6.158 -38.617 12.119 1 111.02 ? O2 0SM 943 A 1 HETATM 28 O O11 0SM . . . E 3 -9.47 -37.179 9.091 1 96.35 ? O11 0SM 943 A 1 HETATM 29 O O1P 0SM . . . E 3 -2.465 -36.354 10.914 1 142.23 ? O1P 0SM 943 A 1 HETATM 30 O O2P 0SM . . . E 3 -3.939 -34.658 12.094 1 142.08 ? O2P 0SM 943 A 1 HETATM 31 O O3P 0SM . . . E 3 -4.473 -35.313 9.674 1 132.1 ? O3P 0SM 943 A 1 HETATM 32 N NBQ 0SM . . . E 3 -7.802 -36.804 10.515 1 107.55 ? NBQ 0SM 943 A 1 HETATM 33 O O4P 0SM . . . E 3 -2.368 -33.822 10.212 1 141.78 ? O4P 0SM 943 A 1 HETATM 34 C CBV 0SM . . . E 3 -6.32 -36.906 10.285 1 115.44 ? CBV 0SM 943 A 1 HETATM 35 P P 0SM . . . E 3 -3.334 -34.998 10.778 1 140.66 ? P 0SM 943 A 1 HETATM 36 C CBU 0SM . . . E 3 -5.419 -37.679 11.305 1 113.86 ? CBU 0SM 943 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 36 #