data_3ZXI
#
_model_server_result.job_id            Qse5lji8ezEc_L2uHZ52pA 
_model_server_result.datetime_utc      '2024-10-15 13:14:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3zxi 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1374}' 
#
_entry.id    3ZXI 
#
_exptl.entry_id    3ZXI 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              495.403 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "PHOSPHORIC ACID 2-AMINO-3-(4-HYDROXY-PHENYL)-PROPYL ESTER ADENOSIN-5'YL ESTER" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3ZXI 
_cell.length_a            53.14 
_cell.length_b            62.87 
_cell.length_c            196.32 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3ZXI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
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_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C19 H24 N6 O8 P -1' 
_chem_comp.formula_weight    495.403 
_chem_comp.id                TYA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "PHOSPHORIC ACID 2-AMINO-3-(4-HYDROXY-PHENYL)-PROPYL ESTER ADENOSIN-5'YL ESTER" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
OPP P TYA sing 332 n n 
OPP C TYA sing 333 n n 
P O1P TYA doub 334 n n 
P O2P TYA sing 335 n n 
P O5' TYA sing 336 n n 
O5' C5' TYA sing 337 n n 
C5' C4' TYA sing 338 n n 
C5' "H5'1" TYA sing 339 n n 
C5' "H5'2" TYA sing 340 n n 
C4' O4' TYA sing 341 n n 
C4' C3' TYA sing 342 n n 
C4' H4' TYA sing 343 n n 
O4' C1' TYA sing 344 n n 
C3' O3' TYA sing 345 n n 
C3' C2' TYA sing 346 n n 
C3' H3' TYA sing 347 n n 
O3' "HO'3" TYA sing 348 n n 
C2' O2' TYA sing 349 n n 
C2' C1' TYA sing 350 n n 
C2' H2' TYA sing 351 n n 
O2' "HO'2" TYA sing 352 n n 
C1' N9 TYA sing 353 n n 
C1' H1' TYA sing 354 n n 
N9 C8 TYA sing 355 n y 
N9 C4 TYA sing 356 n y 
C8 N7 TYA doub 357 n y 
C8 H8 TYA sing 358 n n 
N7 C5 TYA sing 359 n y 
C5 C6 TYA sing 360 n y 
C5 C4 TYA doub 361 n y 
C6 N6 TYA sing 362 n n 
C6 N1 TYA doub 363 n y 
N6 H61 TYA sing 364 n n 
N6 H62 TYA sing 365 n n 
N1 C2 TYA sing 366 n y 
C2 N3 TYA doub 367 n y 
C2 H2 TYA sing 368 n n 
N3 C4 TYA sing 369 n y 
NH2 CA TYA sing 370 n n 
NH2 HN1 TYA sing 371 n n 
NH2 HN2 TYA sing 372 n n 
CA C TYA sing 373 n n 
CA CB TYA sing 374 n n 
CA HA TYA sing 375 n n 
C H1 TYA sing 376 n n 
C H2A TYA sing 377 n n 
CB CG TYA sing 378 n n 
CB HB1 TYA sing 379 n n 
CB HB2 TYA sing 380 n n 
CG CD1 TYA doub 381 n y 
CG CD2 TYA sing 382 n y 
CD1 CE1 TYA sing 383 n y 
CD1 HD1 TYA sing 384 n n 
CD2 CE2 TYA doub 385 n y 
CD2 HD2 TYA sing 386 n n 
CE1 CZ TYA doub 387 n y 
CE1 HE1 TYA sing 388 n n 
CE2 CZ TYA sing 389 n y 
CE2 HE2 TYA sing 390 n n 
CZ OH TYA sing 391 n n 
OH HH TYA sing 392 n n 
#
_atom_sites.entry_id                     3ZXI 
_atom_sites.fract_transf_matrix[1][1]    0.018818 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015906 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005094 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 TYA A 1 1374 1374 TYA TYA . 
D 2 TYA B 1 1374 1374 TYA TYA . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O OPP TYA . . . D 2 18.717 5.681 61.066 1 62.65 ? OPP TYA 1374 B 1 
HETATM 2 P P TYA . . . D 2 20.096 5.094 61.632 1 72.15 ? P TYA 1374 B 1 
HETATM 3 O O1P TYA . . . D 2 21.12 6.287 61.946 1 75.99 ? O1P TYA 1374 B 1 
HETATM 4 O O2P TYA . . . D 2 20.797 4.072 60.706 1 82.83 ? O2P TYA 1374 B 1 
HETATM 5 O O5' TYA . . . D 2 19.677 4.4 62.999 1 86.86 ? O5' TYA 1374 B 1 
HETATM 6 C C5' TYA . . . D 2 20.064 4.952 64.245 1 77.78 ? C5' TYA 1374 B 1 
HETATM 7 C C4' TYA . . . D 2 18.872 5.226 65.12 1 72.58 ? C4' TYA 1374 B 1 
HETATM 8 O O4' TYA . . . D 2 19.302 6.003 66.255 1 75.42 ? O4' TYA 1374 B 1 
HETATM 9 C C3' TYA . . . D 2 17.787 6.054 64.474 1 79.9 ? C3' TYA 1374 B 1 
HETATM 10 O O3' TYA . . . D 2 16.57 5.887 65.197 1 71.39 ? O3' TYA 1374 B 1 
HETATM 11 C C2' TYA . . . D 2 18.31 7.476 64.671 1 87.39 ? C2' TYA 1374 B 1 
HETATM 12 O O2' TYA . . . D 2 17.315 8.47 64.697 1 76.17 ? O2' TYA 1374 B 1 
HETATM 13 C C1' TYA . . . D 2 19.056 7.383 66.01 1 90.58 ? C1' TYA 1374 B 1 
HETATM 14 N N9 TYA . . . D 2 20.344 8.077 66.022 1 84.42 ? N9 TYA 1374 B 1 
HETATM 15 C C8 TYA . . . D 2 21.357 7.895 65.157 1 91.59 ? C8 TYA 1374 B 1 
HETATM 16 N N7 TYA . . . D 2 22.377 8.697 65.522 1 81.24 ? N7 TYA 1374 B 1 
HETATM 17 C C5 TYA . . . D 2 22.016 9.383 66.644 1 78.72 ? C5 TYA 1374 B 1 
HETATM 18 C C6 TYA . . . D 2 22.656 10.334 67.459 1 90.85 ? C6 TYA 1374 B 1 
HETATM 19 N N6 TYA . . . D 2 23.974 10.754 67.154 1 78.4 ? N6 TYA 1374 B 1 
HETATM 20 N N1 TYA . . . D 2 21.996 10.836 68.527 1 81.07 ? N1 TYA 1374 B 1 
HETATM 21 C C2 TYA . . . D 2 20.746 10.42 68.807 1 73.48 ? C2 TYA 1374 B 1 
HETATM 22 N N3 TYA . . . D 2 20.098 9.498 68.05 1 64.05 ? N3 TYA 1374 B 1 
HETATM 23 C C4 TYA . . . D 2 20.717 8.98 66.968 1 77.65 ? C4 TYA 1374 B 1 
HETATM 24 N NH2 TYA . . . D 2 15.716 5.26 59.467 1 63.54 ? NH2 TYA 1374 B 1 
HETATM 25 C CA TYA . . . D 2 16.727 4.493 60.196 1 86.04 ? CA TYA 1374 B 1 
HETATM 26 C C TYA . . . D 2 18.103 5.164 60.023 1 83.88 ? C TYA 1374 B 1 
HETATM 27 C CB TYA . . . D 2 16.719 3.025 59.749 1 81.84 ? CB TYA 1374 B 1 
HETATM 28 C CG TYA . . . D 2 15.372 2.219 59.755 1 45.59 ? CG TYA 1374 B 1 
HETATM 29 C CD1 TYA . . . D 2 15.198 1.128 58.906 1 63.38 ? CD1 TYA 1374 B 1 
HETATM 30 C CD2 TYA . . . D 2 14.329 2.583 60.606 1 50.72 ? CD2 TYA 1374 B 1 
HETATM 31 C CE1 TYA . . . D 2 14.008 0.403 58.905 1 55.39 ? CE1 TYA 1374 B 1 
HETATM 32 C CE2 TYA . . . D 2 13.153 1.859 60.608 1 67.58 ? CE2 TYA 1374 B 1 
HETATM 33 C CZ TYA . . . D 2 12.983 0.775 59.767 1 67.38 ? CZ TYA 1374 B 1 
HETATM 34 O OH TYA . . . D 2 11.807 0.095 59.801 1 66.19 ? OH TYA 1374 B 1 
#
_model_server_stats.io_time_ms              65 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           292 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           34 
#