data_3ZY2 # _model_server_result.job_id S5crS2rqUwjq3JS9Dvp4Gg _model_server_result.datetime_utc '2024-11-23 22:51:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3zy2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1381}' # _entry.id 3ZY2 # _exptl.entry_id 3ZY2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 443.201 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.07 _cell.angle_gamma 90 _cell.entry_id 3ZY2 _cell.length_a 145.018 _cell.length_b 38.247 _cell.length_c 68.196 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3ZY2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 14 A CYS 35 1_555 A SG CYS 16 A CYS 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? disulf ? disulf2 A SG CYS 98 A CYS 119 1_555 A SG CYS 114 A CYS 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf3 A SG CYS 228 A CYS 249 1_555 A SG CYS 260 A CYS 281 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf4 A SG CYS 245 A CYS 266 1_555 A SG CYS 332 A CYS 353 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? metalc ? metalc1 A OE2 GLU 111 A GLU 132 2_555 B MN MN . A MN 1380 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? metalc ? metalc2 B MN MN . A MN 1380 1_555 D O HOH . A HOH 2017 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc3 B MN MN . A MN 1380 1_555 D O HOH . A HOH 2137 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? # _chem_comp.formula 'C10 H15 N5 O11 P2' _chem_comp.formula_weight 443.201 _chem_comp.id GDP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-DIPHOSPHATE" _chem_comp.type 'rna linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B GDP doub 83 n n PB O2B GDP sing 84 n n PB O3B GDP sing 85 n n PB O3A GDP sing 86 n n O2B HOB2 GDP sing 87 n n O3B HOB3 GDP sing 88 n n O3A PA GDP sing 89 n n PA O1A GDP doub 90 n n PA O2A GDP sing 91 n n PA O5' GDP sing 92 n n O2A HOA2 GDP sing 93 n n O5' C5' GDP sing 94 n n C5' C4' GDP sing 95 n n C5' H5' GDP sing 96 n n C5' "H5''" GDP sing 97 n n C4' O4' GDP sing 98 n n C4' C3' GDP sing 99 n n C4' H4' GDP sing 100 n n O4' C1' GDP sing 101 n n C3' O3' GDP sing 102 n n C3' C2' GDP sing 103 n n C3' H3' GDP sing 104 n n O3' HO3' GDP sing 105 n n C2' O2' GDP sing 106 n n C2' C1' GDP sing 107 n n C2' H2' GDP sing 108 n n O2' HO2' GDP sing 109 n n C1' N9 GDP sing 110 n n C1' H1' GDP sing 111 n n N9 C8 GDP sing 112 n y N9 C4 GDP sing 113 n y C8 N7 GDP doub 114 n y C8 H8 GDP sing 115 n n N7 C5 GDP sing 116 n y C5 C6 GDP sing 117 n n C5 C4 GDP doub 118 n y C6 O6 GDP doub 119 n n C6 N1 GDP sing 120 n n N1 C2 GDP sing 121 n n N1 HN1 GDP sing 122 n n C2 N2 GDP sing 123 n n C2 N3 GDP doub 124 n n N2 HN21 GDP sing 125 n n N2 HN22 GDP sing 126 n n N3 C4 GDP sing 127 n n # _atom_sites.entry_id 3ZY2 _atom_sites.fract_transf_matrix[1][1] 0.006896 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001601 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.026146 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015054 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 1380 1380 MN MN . C 3 GDP A 1 1381 1381 GDP GDP . D 4 HOH A 1 2001 2001 HOH HOH . D 4 HOH A 2 2002 2002 HOH HOH . D 4 HOH A 3 2003 2003 HOH HOH . D 4 HOH A 4 2004 2004 HOH HOH . D 4 HOH A 5 2005 2005 HOH HOH . D 4 HOH A 6 2006 2006 HOH HOH . D 4 HOH A 7 2007 2007 HOH HOH . D 4 HOH A 8 2008 2008 HOH HOH . D 4 HOH A 9 2009 2009 HOH HOH . D 4 HOH A 10 2010 2010 HOH HOH . D 4 HOH A 11 2011 2011 HOH HOH . D 4 HOH A 12 2012 2012 HOH HOH . D 4 HOH A 13 2013 2013 HOH HOH . D 4 HOH A 14 2014 2014 HOH HOH . D 4 HOH A 15 2015 2015 HOH HOH . D 4 HOH A 16 2016 2016 HOH HOH . D 4 HOH A 17 2017 2017 HOH HOH . D 4 HOH A 18 2018 2018 HOH HOH . D 4 HOH A 19 2019 2019 HOH HOH . D 4 HOH A 20 2020 2020 HOH HOH . D 4 HOH A 21 2021 2021 HOH HOH . D 4 HOH A 22 2022 2022 HOH HOH . D 4 HOH A 23 2023 2023 HOH HOH . D 4 HOH A 24 2024 2024 HOH HOH . D 4 HOH A 25 2025 2025 HOH HOH . D 4 HOH A 26 2026 2026 HOH HOH . D 4 HOH A 27 2027 2027 HOH HOH . D 4 HOH A 28 2028 2028 HOH HOH . D 4 HOH A 29 2029 2029 HOH HOH . D 4 HOH A 30 2030 2030 HOH HOH . D 4 HOH A 31 2031 2031 HOH HOH . D 4 HOH A 32 2032 2032 HOH HOH . D 4 HOH A 33 2033 2033 HOH HOH . D 4 HOH A 34 2034 2034 HOH HOH . D 4 HOH A 35 2035 2035 HOH HOH . D 4 HOH A 36 2036 2036 HOH HOH . D 4 HOH A 37 2037 2037 HOH HOH . D 4 HOH A 38 2038 2038 HOH HOH . D 4 HOH A 39 2039 2039 HOH HOH . D 4 HOH A 40 2040 2040 HOH HOH . D 4 HOH A 41 2041 2041 HOH HOH . D 4 HOH A 42 2042 2042 HOH HOH . D 4 HOH A 43 2043 2043 HOH HOH . D 4 HOH A 44 2044 2044 HOH HOH . D 4 HOH A 45 2045 2045 HOH HOH . D 4 HOH A 46 2046 2046 HOH HOH . D 4 HOH A 47 2047 2047 HOH HOH . D 4 HOH A 48 2048 2048 HOH HOH . D 4 HOH A 49 2049 2049 HOH HOH . D 4 HOH A 50 2050 2050 HOH HOH . D 4 HOH A 51 2051 2051 HOH HOH . D 4 HOH A 52 2052 2052 HOH HOH . D 4 HOH A 53 2053 2053 HOH HOH . D 4 HOH A 54 2054 2054 HOH HOH . D 4 HOH A 55 2055 2055 HOH HOH . D 4 HOH A 56 2056 2056 HOH HOH . D 4 HOH A 57 2057 2057 HOH HOH . D 4 HOH A 58 2058 2058 HOH HOH . D 4 HOH A 59 2059 2059 HOH HOH . D 4 HOH A 60 2060 2060 HOH HOH . D 4 HOH A 61 2061 2061 HOH HOH . D 4 HOH A 62 2062 2062 HOH HOH . D 4 HOH A 63 2063 2063 HOH HOH . D 4 HOH A 64 2064 2064 HOH HOH . D 4 HOH A 65 2065 2065 HOH HOH . D 4 HOH A 66 2066 2066 HOH HOH . D 4 HOH A 67 2067 2067 HOH HOH . D 4 HOH A 68 2068 2068 HOH HOH . D 4 HOH A 69 2069 2069 HOH HOH . D 4 HOH A 70 2070 2070 HOH HOH . D 4 HOH A 71 2071 2071 HOH HOH . D 4 HOH A 72 2072 2072 HOH HOH . D 4 HOH A 73 2073 2073 HOH HOH . D 4 HOH A 74 2074 2074 HOH HOH . D 4 HOH A 75 2075 2075 HOH HOH . D 4 HOH A 76 2076 2076 HOH HOH . D 4 HOH A 77 2077 2077 HOH HOH . D 4 HOH A 78 2078 2078 HOH HOH . D 4 HOH A 79 2079 2079 HOH HOH . D 4 HOH A 80 2080 2080 HOH HOH . D 4 HOH A 81 2081 2081 HOH HOH . D 4 HOH A 82 2082 2082 HOH HOH . D 4 HOH A 83 2083 2083 HOH HOH . D 4 HOH A 84 2084 2084 HOH HOH . D 4 HOH A 85 2085 2085 HOH HOH . D 4 HOH A 86 2086 2086 HOH HOH . D 4 HOH A 87 2087 2087 HOH HOH . D 4 HOH A 88 2088 2088 HOH HOH . D 4 HOH A 89 2089 2089 HOH HOH . D 4 HOH A 90 2090 2090 HOH HOH . D 4 HOH A 91 2091 2091 HOH HOH . D 4 HOH A 92 2092 2092 HOH HOH . D 4 HOH A 93 2093 2093 HOH HOH . D 4 HOH A 94 2094 2094 HOH HOH . D 4 HOH A 95 2095 2095 HOH HOH . D 4 HOH A 96 2096 2096 HOH HOH . D 4 HOH A 97 2097 2097 HOH HOH . D 4 HOH A 98 2098 2098 HOH HOH . D 4 HOH A 99 2099 2099 HOH HOH . D 4 HOH A 100 2100 2100 HOH HOH . D 4 HOH A 101 2101 2101 HOH HOH . D 4 HOH A 102 2102 2102 HOH HOH . D 4 HOH A 103 2103 2103 HOH HOH . D 4 HOH A 104 2104 2104 HOH HOH . D 4 HOH A 105 2105 2105 HOH HOH . D 4 HOH A 106 2106 2106 HOH HOH . D 4 HOH A 107 2107 2107 HOH HOH . D 4 HOH A 108 2108 2108 HOH HOH . D 4 HOH A 109 2109 2109 HOH HOH . D 4 HOH A 110 2110 2110 HOH HOH . D 4 HOH A 111 2111 2111 HOH HOH . D 4 HOH A 112 2112 2112 HOH HOH . D 4 HOH A 113 2113 2113 HOH HOH . D 4 HOH A 114 2114 2114 HOH HOH . D 4 HOH A 115 2115 2115 HOH HOH . D 4 HOH A 116 2116 2116 HOH HOH . D 4 HOH A 117 2117 2117 HOH HOH . D 4 HOH A 118 2118 2118 HOH HOH . D 4 HOH A 119 2119 2119 HOH HOH . D 4 HOH A 120 2120 2120 HOH HOH . D 4 HOH A 121 2121 2121 HOH HOH . D 4 HOH A 122 2122 2122 HOH HOH . D 4 HOH A 123 2123 2123 HOH HOH . D 4 HOH A 124 2124 2124 HOH HOH . D 4 HOH A 125 2125 2125 HOH HOH . D 4 HOH A 126 2126 2126 HOH HOH . D 4 HOH A 127 2127 2127 HOH HOH . D 4 HOH A 128 2128 2128 HOH HOH . D 4 HOH A 129 2129 2129 HOH HOH . D 4 HOH A 130 2130 2130 HOH HOH . D 4 HOH A 131 2131 2131 HOH HOH . D 4 HOH A 132 2132 2132 HOH HOH . D 4 HOH A 133 2133 2133 HOH HOH . D 4 HOH A 134 2134 2134 HOH HOH . D 4 HOH A 135 2135 2135 HOH HOH . D 4 HOH A 136 2136 2136 HOH HOH . D 4 HOH A 137 2137 2137 HOH HOH . D 4 HOH A 138 2138 2138 HOH HOH . D 4 HOH A 139 2139 2139 HOH HOH . D 4 HOH A 140 2140 2140 HOH HOH . D 4 HOH A 141 2141 2141 HOH HOH . D 4 HOH A 142 2142 2142 HOH HOH . D 4 HOH A 143 2143 2143 HOH HOH . D 4 HOH A 144 2144 2144 HOH HOH . D 4 HOH A 145 2145 2145 HOH HOH . D 4 HOH A 146 2146 2146 HOH HOH . D 4 HOH A 147 2147 2147 HOH HOH . D 4 HOH A 148 2148 2148 HOH HOH . D 4 HOH A 149 2149 2149 HOH HOH . D 4 HOH A 150 2150 2150 HOH HOH . D 4 HOH A 151 2151 2151 HOH HOH . D 4 HOH A 152 2152 2152 HOH HOH . D 4 HOH A 153 2153 2153 HOH HOH . D 4 HOH A 154 2154 2154 HOH HOH . D 4 HOH A 155 2155 2155 HOH HOH . D 4 HOH A 156 2156 2156 HOH HOH . D 4 HOH A 157 2157 2157 HOH HOH . D 4 HOH A 158 2158 2158 HOH HOH . D 4 HOH A 159 2159 2159 HOH HOH . D 4 HOH A 160 2160 2160 HOH HOH . D 4 HOH A 161 2161 2161 HOH HOH . D 4 HOH A 162 2162 2162 HOH HOH . D 4 HOH A 163 2163 2163 HOH HOH . D 4 HOH A 164 2164 2164 HOH HOH . D 4 HOH A 165 2165 2165 HOH HOH . D 4 HOH A 166 2166 2166 HOH HOH . D 4 HOH A 167 2167 2167 HOH HOH . D 4 HOH A 168 2168 2168 HOH HOH . D 4 HOH A 169 2169 2169 HOH HOH . D 4 HOH A 170 2170 2170 HOH HOH . D 4 HOH A 171 2171 2171 HOH HOH . D 4 HOH A 172 2172 2172 HOH HOH . D 4 HOH A 173 2173 2173 HOH HOH . D 4 HOH A 174 2174 2174 HOH HOH . D 4 HOH A 175 2175 2175 HOH HOH . D 4 HOH A 176 2176 2176 HOH HOH . D 4 HOH A 177 2177 2177 HOH HOH . D 4 HOH A 178 2178 2178 HOH HOH . D 4 HOH A 179 2179 2179 HOH HOH . D 4 HOH A 180 2180 2180 HOH HOH . D 4 HOH A 181 2181 2181 HOH HOH . D 4 HOH A 182 2182 2182 HOH HOH . D 4 HOH A 183 2183 2183 HOH HOH . D 4 HOH A 184 2184 2184 HOH HOH . D 4 HOH A 185 2185 2185 HOH HOH . D 4 HOH A 186 2186 2186 HOH HOH . D 4 HOH A 187 2187 2187 HOH HOH . D 4 HOH A 188 2188 2188 HOH HOH . D 4 HOH A 189 2189 2189 HOH HOH . D 4 HOH A 190 2190 2190 HOH HOH . D 4 HOH A 191 2191 2191 HOH HOH . D 4 HOH A 192 2192 2192 HOH HOH . D 4 HOH A 193 2193 2193 HOH HOH . D 4 HOH A 194 2194 2194 HOH HOH . D 4 HOH A 195 2195 2195 HOH HOH . D 4 HOH A 196 2196 2196 HOH HOH . D 4 HOH A 197 2197 2197 HOH HOH . D 4 HOH A 198 2198 2198 HOH HOH . D 4 HOH A 199 2199 2199 HOH HOH . D 4 HOH A 200 2200 2200 HOH HOH . D 4 HOH A 201 2201 2201 HOH HOH . D 4 HOH A 202 2202 2202 HOH HOH . D 4 HOH A 203 2203 2203 HOH HOH . D 4 HOH A 204 2204 2204 HOH HOH . D 4 HOH A 205 2205 2205 HOH HOH . D 4 HOH A 206 2206 2206 HOH HOH . D 4 HOH A 207 2207 2207 HOH HOH . D 4 HOH A 208 2208 2208 HOH HOH . D 4 HOH A 209 2209 2209 HOH HOH . D 4 HOH A 210 2210 2210 HOH HOH . D 4 HOH A 211 2211 2211 HOH HOH . D 4 HOH A 212 2212 2212 HOH HOH . D 4 HOH A 213 2213 2213 HOH HOH . D 4 HOH A 214 2214 2214 HOH HOH . D 4 HOH A 215 2215 2215 HOH HOH . D 4 HOH A 216 2216 2216 HOH HOH . D 4 HOH A 217 2217 2217 HOH HOH . D 4 HOH A 218 2218 2218 HOH HOH . D 4 HOH A 219 2219 2219 HOH HOH . D 4 HOH A 220 2220 2220 HOH HOH . D 4 HOH A 221 2221 2221 HOH HOH . D 4 HOH A 222 2222 2222 HOH HOH . D 4 HOH A 223 2223 2223 HOH HOH . D 4 HOH A 224 2224 2224 HOH HOH . D 4 HOH A 225 2225 2225 HOH HOH . D 4 HOH A 226 2226 2226 HOH HOH . D 4 HOH A 227 2227 2227 HOH HOH . D 4 HOH A 228 2228 2228 HOH HOH . D 4 HOH A 229 2229 2229 HOH HOH . D 4 HOH A 230 2230 2230 HOH HOH . D 4 HOH A 231 2231 2231 HOH HOH . D 4 HOH A 232 2232 2232 HOH HOH . D 4 HOH A 233 2233 2233 HOH HOH . D 4 HOH A 234 2234 2234 HOH HOH . D 4 HOH A 235 2235 2235 HOH HOH . D 4 HOH A 236 2236 2236 HOH HOH . D 4 HOH A 237 2237 2237 HOH HOH . D 4 HOH A 238 2238 2238 HOH HOH . D 4 HOH A 239 2239 2239 HOH HOH . D 4 HOH A 240 2240 2240 HOH HOH . D 4 HOH A 241 2241 2241 HOH HOH . D 4 HOH A 242 2242 2242 HOH HOH . D 4 HOH A 243 2243 2243 HOH HOH . D 4 HOH A 244 2244 2244 HOH HOH . D 4 HOH A 245 2245 2245 HOH HOH . D 4 HOH A 246 2246 2246 HOH HOH . D 4 HOH A 247 2247 2247 HOH HOH . D 4 HOH A 248 2248 2248 HOH HOH . D 4 HOH A 249 2249 2249 HOH HOH . D 4 HOH A 250 2250 2250 HOH HOH . D 4 HOH A 251 2251 2251 HOH HOH . D 4 HOH A 252 2252 2252 HOH HOH . D 4 HOH A 253 2253 2253 HOH HOH . D 4 HOH A 254 2254 2254 HOH HOH . D 4 HOH A 255 2255 2255 HOH HOH . D 4 HOH A 256 2256 2256 HOH HOH . D 4 HOH A 257 2257 2257 HOH HOH . D 4 HOH A 258 2258 2258 HOH HOH . D 4 HOH A 259 2259 2259 HOH HOH . D 4 HOH A 260 2260 2260 HOH HOH . D 4 HOH A 261 2261 2261 HOH HOH . D 4 HOH A 262 2262 2262 HOH HOH . D 4 HOH A 263 2263 2263 HOH HOH . D 4 HOH A 264 2264 2264 HOH HOH . D 4 HOH A 265 2265 2265 HOH HOH . D 4 HOH A 266 2266 2266 HOH HOH . D 4 HOH A 267 2267 2267 HOH HOH . D 4 HOH A 268 2268 2268 HOH HOH . D 4 HOH A 269 2269 2269 HOH HOH . D 4 HOH A 270 2270 2270 HOH HOH . D 4 HOH A 271 2271 2271 HOH HOH . D 4 HOH A 272 2272 2272 HOH HOH . D 4 HOH A 273 2273 2273 HOH HOH . D 4 HOH A 274 2274 2274 HOH HOH . D 4 HOH A 275 2275 2275 HOH HOH . D 4 HOH A 276 2276 2276 HOH HOH . D 4 HOH A 277 2277 2277 HOH HOH . D 4 HOH A 278 2278 2278 HOH HOH . D 4 HOH A 279 2279 2279 HOH HOH . D 4 HOH A 280 2280 2280 HOH HOH . D 4 HOH A 281 2281 2281 HOH HOH . D 4 HOH A 282 2282 2282 HOH HOH . D 4 HOH A 283 2283 2283 HOH HOH . D 4 HOH A 284 2284 2284 HOH HOH . D 4 HOH A 285 2285 2285 HOH HOH . D 4 HOH A 286 2286 2286 HOH HOH . D 4 HOH A 287 2287 2287 HOH HOH . D 4 HOH A 288 2288 2288 HOH HOH . D 4 HOH A 289 2289 2289 HOH HOH . D 4 HOH A 290 2290 2290 HOH HOH . D 4 HOH A 291 2291 2291 HOH HOH . D 4 HOH A 292 2292 2292 HOH HOH . D 4 HOH A 293 2293 2293 HOH HOH . D 4 HOH A 294 2294 2294 HOH HOH . D 4 HOH A 295 2295 2295 HOH HOH . D 4 HOH A 296 2296 2296 HOH HOH . D 4 HOH A 297 2297 2297 HOH HOH . D 4 HOH A 298 2298 2298 HOH HOH . D 4 HOH A 299 2299 2299 HOH HOH . D 4 HOH A 300 2300 2300 HOH HOH . D 4 HOH A 301 2301 2301 HOH HOH . D 4 HOH A 302 2302 2302 HOH HOH . D 4 HOH A 303 2303 2303 HOH HOH . D 4 HOH A 304 2304 2304 HOH HOH . D 4 HOH A 305 2305 2305 HOH HOH . D 4 HOH A 306 2306 2306 HOH HOH . D 4 HOH A 307 2307 2307 HOH HOH . D 4 HOH A 308 2308 2308 HOH HOH . D 4 HOH A 309 2309 2309 HOH HOH . D 4 HOH A 310 2310 2310 HOH HOH . D 4 HOH A 311 2311 2311 HOH HOH . D 4 HOH A 312 2312 2312 HOH HOH . D 4 HOH A 313 2313 2313 HOH HOH . D 4 HOH A 314 2314 2314 HOH HOH . D 4 HOH A 315 2315 2315 HOH HOH . D 4 HOH A 316 2316 2316 HOH HOH . D 4 HOH A 317 2317 2317 HOH HOH . D 4 HOH A 318 2318 2318 HOH HOH . D 4 HOH A 319 2319 2319 HOH HOH . D 4 HOH A 320 2320 2320 HOH HOH . D 4 HOH A 321 2321 2321 HOH HOH . D 4 HOH A 322 2322 2322 HOH HOH . D 4 HOH A 323 2323 2323 HOH HOH . D 4 HOH A 324 2324 2324 HOH HOH . D 4 HOH A 325 2325 2325 HOH HOH . D 4 HOH A 326 2326 2326 HOH HOH . D 4 HOH A 327 2327 2327 HOH HOH . D 4 HOH A 328 2328 2328 HOH HOH . D 4 HOH A 329 2329 2329 HOH HOH . D 4 HOH A 330 2330 2330 HOH HOH . D 4 HOH A 331 2331 2331 HOH HOH . D 4 HOH A 332 2332 2332 HOH HOH . D 4 HOH A 333 2333 2333 HOH HOH . D 4 HOH A 334 2334 2334 HOH HOH . D 4 HOH A 335 2335 2335 HOH HOH . D 4 HOH A 336 2336 2336 HOH HOH . D 4 HOH A 337 2337 2337 HOH HOH . D 4 HOH A 338 2338 2338 HOH HOH . D 4 HOH A 339 2339 2339 HOH HOH . D 4 HOH A 340 2340 2340 HOH HOH . D 4 HOH A 341 2341 2341 HOH HOH . D 4 HOH A 342 2342 2342 HOH HOH . D 4 HOH A 343 2343 2343 HOH HOH . D 4 HOH A 344 2344 2344 HOH HOH . D 4 HOH A 345 2345 2345 HOH HOH . D 4 HOH A 346 2346 2346 HOH HOH . D 4 HOH A 347 2347 2347 HOH HOH . D 4 HOH A 348 2348 2348 HOH HOH . D 4 HOH A 349 2349 2349 HOH HOH . D 4 HOH A 350 2350 2350 HOH HOH . D 4 HOH A 351 2351 2351 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB GDP . A . C 3 7.959 -15.037 19.275 0.5 29.74 ? PB GDP 1381 A 1 HETATM 2 P PB GDP . B . C 3 7.815 -15.141 19.433 0.5 9.36 ? PB GDP 1381 A 1 HETATM 3 O O1B GDP . A . C 3 8.503 -14.842 20.642 0.5 17.02 ? O1B GDP 1381 A 1 HETATM 4 O O1B GDP . B . C 3 6.842 -13.99 18.762 0.5 9.92 ? O1B GDP 1381 A 1 HETATM 5 O O2B GDP . A . C 3 7.615 -16.367 18.532 0.5 22.43 ? O2B GDP 1381 A 1 HETATM 6 O O2B GDP . B . C 3 7.243 -16.434 18.985 0.5 8.69 ? O2B GDP 1381 A 1 HETATM 7 O O3B GDP . A . C 3 7.535 -13.653 18.488 0.5 23.19 ? O3B GDP 1381 A 1 HETATM 8 O O3B GDP . B . C 3 7.872 -15.068 20.859 0.5 9.4 ? O3B GDP 1381 A 1 HETATM 9 O O3A GDP . A . C 3 9.609 -14.869 18.82 0.5 15.8 ? O3A GDP 1381 A 1 HETATM 10 O O3A GDP . B . C 3 8.902 -15.074 18.635 0.5 9.39 ? O3A GDP 1381 A 1 HETATM 11 P PA GDP . A . C 3 10.193 -14.198 17.351 0.5 25.82 ? PA GDP 1381 A 1 HETATM 12 P PA GDP . B . C 3 9.843 -14.126 17.581 0.5 14.19 ? PA GDP 1381 A 1 HETATM 13 O O1A GDP . A . C 3 11.797 -14.432 17.992 0.5 17.65 ? O1A GDP 1381 A 1 HETATM 14 O O1A GDP . B . C 3 11.124 -14.231 17.47 0.5 13.19 ? O1A GDP 1381 A 1 HETATM 15 O O2A GDP . A . C 3 9.81 -14.63 16.154 0.5 10.46 ? O2A GDP 1381 A 1 HETATM 16 O O2A GDP . B . C 3 8.845 -14.166 17.008 0.5 9.98 ? O2A GDP 1381 A 1 HETATM 17 O O5' GDP . A . C 3 9.446 -12.633 17.809 0.5 24.32 ? O5' GDP 1381 A 1 HETATM 18 O O5' GDP . B . C 3 9.627 -12.607 17.781 0.5 13.37 ? O5' GDP 1381 A 1 HETATM 19 C C5' GDP . A . C 3 10.256 -12.43 18.794 0.5 20.91 ? C5' GDP 1381 A 1 HETATM 20 C C5' GDP . B . C 3 9.917 -11.82 19.042 0.5 12.06 ? C5' GDP 1381 A 1 HETATM 21 C C4' GDP . A . C 3 10.937 -11.298 19.049 0.5 28.72 ? C4' GDP 1381 A 1 HETATM 22 C C4' GDP . B . C 3 11.137 -11.061 18.726 0.5 5.87 ? C4' GDP 1381 A 1 HETATM 23 O O4' GDP . A . C 3 10.85 -10.207 19.874 0.5 28.48 ? O4' GDP 1381 A 1 HETATM 24 O O4' GDP . B . C 3 11.144 -10.167 19.867 0.5 9.63 ? O4' GDP 1381 A 1 HETATM 25 C C3' GDP . A . C 3 12.244 -11.766 19.067 0.5 23.44 ? C3' GDP 1381 A 1 HETATM 26 C C3' GDP . B . C 3 12.579 -11.541 18.784 0.5 7.19 ? C3' GDP 1381 A 1 HETATM 27 O O3' GDP . A . C 3 13.343 -11.971 17.738 0.5 21.22 ? O3' GDP 1381 A 1 HETATM 28 O O3' GDP . B . C 3 12.773 -12.282 17.507 0.5 12.44 ? O3' GDP 1381 A 1 HETATM 29 C C2' GDP . A . C 3 13.599 -10.145 19.659 0.5 50.32 ? C2' GDP 1381 A 1 HETATM 30 C C2' GDP . B . C 3 13.315 -10.488 19.338 0.5 5.81 ? C2' GDP 1381 A 1 HETATM 31 O O2' GDP . A . C 3 13.676 -9.424 18.511 0.5 20.56 ? O2' GDP 1381 A 1 HETATM 32 O O2' GDP . B . C 3 13.234 -9.572 18.136 0.5 12.73 ? O2' GDP 1381 A 1 HETATM 33 C C1' GDP . A . C 3 12.43 -9.787 20.56 0.5 29.92 ? C1' GDP 1381 A 1 HETATM 34 C C1' GDP . B . C 3 12.277 -9.949 20.326 0.5 11.27 ? C1' GDP 1381 A 1 HETATM 35 N N9 GDP . A . C 3 12.574 -10.494 21.623 0.5 25.66 ? N9 GDP 1381 A 1 HETATM 36 N N9 GDP . B . C 3 12.541 -10.621 21.671 0.5 8.55 ? N9 GDP 1381 A 1 HETATM 37 C C8 GDP . A . C 3 11.455 -11.791 22.254 0.5 26.93 ? C8 GDP 1381 A 1 HETATM 38 C C8 GDP . B . C 3 11.713 -11.39 22.059 0.5 7.24 ? C8 GDP 1381 A 1 HETATM 39 N N7 GDP . A . C 3 12.303 -11.913 23.225 0.5 30.98 ? N7 GDP 1381 A 1 HETATM 40 N N7 GDP . B . C 3 12.253 -11.811 23.286 0.5 6.58 ? N7 GDP 1381 A 1 HETATM 41 C C5 GDP . A . C 3 13.401 -11.329 23.503 0.5 21.33 ? C5 GDP 1381 A 1 HETATM 42 C C5 GDP . B . C 3 13.437 -11.285 23.614 0.5 8.17 ? C5 GDP 1381 A 1 HETATM 43 C C6 GDP . A . C 3 14.762 -11.148 24.569 0.5 26.25 ? C6 GDP 1381 A 1 HETATM 44 C C6 GDP . B . C 3 14.426 -11.179 24.46 0.5 8.98 ? C6 GDP 1381 A 1 HETATM 45 O O6 GDP . A . C 3 14.619 -11.902 25.415 0.5 22.12 ? O6 GDP 1381 A 1 HETATM 46 O O6 GDP . B . C 3 14.348 -11.933 25.549 0.5 14.34 ? O6 GDP 1381 A 1 HETATM 47 N N1 GDP . A . C 3 15.366 -10.373 24.129 0.5 22.09 ? N1 GDP 1381 A 1 HETATM 48 N N1 GDP . B . C 3 15.695 -10.297 24.305 0.5 12.22 ? N1 GDP 1381 A 1 HETATM 49 C C2 GDP . A . C 3 15.528 -9.552 23.21 0.5 23.77 ? C2 GDP 1381 A 1 HETATM 50 C C2 GDP . B . C 3 15.557 -9.5 22.921 0.5 9.39 ? C2 GDP 1381 A 1 HETATM 51 N N2 GDP . A . C 3 16.22 -8.871 22.982 0.5 19.79 ? N2 GDP 1381 A 1 HETATM 52 N N2 GDP . B . C 3 16.865 -8.728 23.026 0.5 11.1 ? N2 GDP 1381 A 1 HETATM 53 N N3 GDP . A . C 3 14.54 -9.348 21.998 0.5 25.23 ? N3 GDP 1381 A 1 HETATM 54 N N3 GDP . B . C 3 14.663 -9.611 22.195 0.5 8.13 ? N3 GDP 1381 A 1 HETATM 55 C C4 GDP . A . C 3 13.506 -10.315 22.28 0.5 22.66 ? C4 GDP 1381 A 1 HETATM 56 C C4 GDP . B . C 3 13.691 -10.401 22.486 0.5 6.27 ? C4 GDP 1381 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 24 _model_server_stats.element_count 56 #