data_403D # _model_server_result.job_id lX4h6acNe2WlP8gFqGzcmg _model_server_result.datetime_utc '2024-10-19 02:21:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 403d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":26}' # _entry.id 403D # _exptl.entry_id 403D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 403D _cell.length_a 25.759 _cell.length_b 41.084 _cell.length_c 64.307 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 403D _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A O3' DC 3 A DC 3 1_555 A P IGU 4 A IGU 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.59 ? covale ? covale2 A O3' IGU 4 A IGU 4 1_555 A P DA 5 A DA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.598 ? covale ? covale3 B O3' DC 3 B DC 15 1_555 B P IGU 4 B IGU 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.601 ? covale ? covale4 B O3' IGU 4 B IGU 16 1_555 B P DA 5 B DA 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.611 ? metalc ? metalc1 D MG MG . A MG 26 1_555 E O HOH . A HOH 1139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc2 D MG MG . A MG 26 1_555 E O HOH . A HOH 1140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc3 D MG MG . A MG 26 1_555 E O HOH . A HOH 1141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? metalc ? metalc4 D MG MG . A MG 26 1_555 F O HOH . B HOH 1138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc5 D MG MG . A MG 26 1_555 F O HOH . B HOH 1142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? metalc ? metalc6 D MG MG . A MG 26 1_555 F O HOH . B HOH 1143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? hydrog WATSON-CRICK hydrog1 A N3 DC 1 A DC 1 1_555 B N1 DG 12 B DG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N4 DC 1 A DC 1 1_555 B O6 DG 12 B DG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O2 DC 1 A DC 1 1_555 B N2 DG 12 B DG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N1 DG 2 A DG 2 1_555 B N3 DC 11 B DC 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N2 DG 2 A DG 2 1_555 B O2 DC 11 B DC 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A O6 DG 2 A DG 2 1_555 B N4 DC 11 B DC 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N3 DC 3 A DC 3 1_555 B N1 DG 10 B DG 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N4 DC 3 A DC 3 1_555 B O6 DG 10 B DG 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A O2 DC 3 A DC 3 1_555 B N2 DG 10 B DG 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N1 DA 5 A DA 5 1_555 B N3 DT 8 B DT 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N6 DA 5 A DA 5 1_555 B O4 DT 8 B DT 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A N1 DA 6 A DA 6 1_555 B N3 DT 7 B DT 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N6 DA 6 A DA 6 1_555 B O4 DT 7 B DT 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N3 DT 7 A DT 7 1_555 B N1 DA 6 B DA 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A O4 DT 7 A DT 7 1_555 B N6 DA 6 B DA 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N3 DT 8 A DT 8 1_555 B N1 DA 5 B DA 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A O4 DT 8 A DT 8 1_555 B N6 DA 5 B DA 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DT-IGU MISPAIR' hydrog18 A O4 DT 9 A DT 9 1_555 B N1 IGU 4 B IGU 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A N1 DG 10 A DG 10 1_555 B N3 DC 3 B DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A N2 DG 10 A DG 10 1_555 B O2 DC 3 B DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A O6 DG 10 A DG 10 1_555 B N4 DC 3 B DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A N3 DC 11 A DC 11 1_555 B N1 DG 2 B DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A N4 DC 11 A DC 11 1_555 B O6 DG 2 B DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A O2 DC 11 A DC 11 1_555 B N2 DG 2 B DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 A N1 DG 12 A DG 12 1_555 B N3 DC 1 B DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 A N2 DG 12 A DG 12 1_555 B O2 DC 1 B DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 A O6 DG 12 A DG 12 1_555 B N4 DC 1 B DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 403D _atom_sites.fract_transf_matrix[1][1] 0.038821 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02434 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01555 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HT1 A 1 25 25 HT1 HT1 . D 3 MG A 1 26 26 MG MO6 . E 4 HOH A 1 1001 1001 HOH HOH . E 4 HOH A 2 1003 1003 HOH HOH . E 4 HOH A 3 1005 1005 HOH HOH . E 4 HOH A 4 1006 1006 HOH HOH . E 4 HOH A 5 1007 1007 HOH HOH . E 4 HOH A 6 1010 1010 HOH HOH . E 4 HOH A 7 1011 1011 HOH HOH . E 4 HOH A 8 1014 1014 HOH HOH . E 4 HOH A 9 1015 1015 HOH HOH . E 4 HOH A 10 1016 1016 HOH HOH . E 4 HOH A 11 1017 1017 HOH HOH . E 4 HOH A 12 1018 1018 HOH HOH . E 4 HOH A 13 1021 1021 HOH HOH . E 4 HOH A 14 1022 1022 HOH HOH . E 4 HOH A 15 1026 1026 HOH HOH . E 4 HOH A 16 1028 1028 HOH HOH . E 4 HOH A 17 1030 1030 HOH HOH . E 4 HOH A 18 1031 1031 HOH HOH . E 4 HOH A 19 1033 1033 HOH HOH . E 4 HOH A 20 1035 1035 HOH HOH . E 4 HOH A 21 1038 1038 HOH HOH . E 4 HOH A 22 1040 1040 HOH HOH . E 4 HOH A 23 1042 1042 HOH HOH . E 4 HOH A 24 1043 1043 HOH HOH . E 4 HOH A 25 1044 1044 HOH HOH . E 4 HOH A 26 1046 1046 HOH HOH . E 4 HOH A 27 1048 1048 HOH HOH . E 4 HOH A 28 1050 1050 HOH HOH . E 4 HOH A 29 1051 1051 HOH HOH . E 4 HOH A 30 1052 1052 HOH HOH . E 4 HOH A 31 1053 1053 HOH HOH . E 4 HOH A 32 1054 1054 HOH HOH . E 4 HOH A 33 1056 1056 HOH HOH . E 4 HOH A 34 1057 1057 HOH HOH . E 4 HOH A 35 1059 1059 HOH HOH . E 4 HOH A 36 1063 1063 HOH HOH . E 4 HOH A 37 1064 1064 HOH HOH . E 4 HOH A 38 1065 1065 HOH HOH . E 4 HOH A 39 1068 1068 HOH HOH . E 4 HOH A 40 1069 1069 HOH HOH . E 4 HOH A 41 1072 1072 HOH HOH . E 4 HOH A 42 1076 1076 HOH HOH . E 4 HOH A 43 1077 1077 HOH HOH . E 4 HOH A 44 1078 1078 HOH HOH . E 4 HOH A 45 1079 1079 HOH HOH . E 4 HOH A 46 1084 1084 HOH HOH . E 4 HOH A 47 1091 1091 HOH HOH . E 4 HOH A 48 1093 1093 HOH HOH . E 4 HOH A 49 1102 1102 HOH HOH . E 4 HOH A 50 1107 1107 HOH HOH . E 4 HOH A 51 1110 1110 HOH HOH . E 4 HOH A 52 1112 1112 HOH HOH . E 4 HOH A 53 1113 1113 HOH HOH . E 4 HOH A 54 1114 1114 HOH HOH . E 4 HOH A 55 1115 1115 HOH HOH . E 4 HOH A 56 1116 1116 HOH HOH . E 4 HOH A 57 1118 1118 HOH HOH . E 4 HOH A 58 1119 1119 HOH HOH . E 4 HOH A 59 1122 1122 HOH HOH . E 4 HOH A 60 1125 1125 HOH HOH . E 4 HOH A 61 1131 1131 HOH HOH . E 4 HOH A 62 1139 26 HOH MO6 . E 4 HOH A 63 1140 26 HOH MO6 . E 4 HOH A 64 1141 26 HOH MO6 . F 4 HOH B 1 1002 1002 HOH HOH . F 4 HOH B 2 1004 1004 HOH HOH . F 4 HOH B 3 1008 1008 HOH HOH . F 4 HOH B 4 1009 1009 HOH HOH . F 4 HOH B 5 1012 1012 HOH HOH . F 4 HOH B 6 1013 1013 HOH HOH . F 4 HOH B 7 1019 1019 HOH HOH . F 4 HOH B 8 1020 1020 HOH HOH . F 4 HOH B 9 1023 1023 HOH HOH . F 4 HOH B 10 1024 1024 HOH HOH . F 4 HOH B 11 1025 1025 HOH HOH . F 4 HOH B 12 1027 1027 HOH HOH . F 4 HOH B 13 1029 1029 HOH HOH . F 4 HOH B 14 1032 1032 HOH HOH . F 4 HOH B 15 1034 1034 HOH HOH . F 4 HOH B 16 1036 1036 HOH HOH . F 4 HOH B 17 1037 1037 HOH HOH . F 4 HOH B 18 1039 1039 HOH HOH . F 4 HOH B 19 1041 1041 HOH HOH . F 4 HOH B 20 1045 1045 HOH HOH . F 4 HOH B 21 1047 1047 HOH HOH . F 4 HOH B 22 1049 1049 HOH HOH . F 4 HOH B 23 1055 1055 HOH HOH . F 4 HOH B 24 1058 1058 HOH HOH . F 4 HOH B 25 1060 1060 HOH HOH . F 4 HOH B 26 1061 1061 HOH HOH . F 4 HOH B 27 1062 1062 HOH HOH . F 4 HOH B 28 1067 1067 HOH HOH . F 4 HOH B 29 1070 1070 HOH HOH . F 4 HOH B 30 1073 1073 HOH HOH . F 4 HOH B 31 1074 1074 HOH HOH . F 4 HOH B 32 1075 1075 HOH HOH . F 4 HOH B 33 1080 1080 HOH HOH . F 4 HOH B 34 1082 1082 HOH HOH . F 4 HOH B 35 1086 1086 HOH HOH . F 4 HOH B 36 1087 1087 HOH HOH . F 4 HOH B 37 1089 1089 HOH HOH . F 4 HOH B 38 1090 1090 HOH HOH . F 4 HOH B 39 1092 1092 HOH HOH . F 4 HOH B 40 1094 1094 HOH HOH . F 4 HOH B 41 1096 1096 HOH HOH . F 4 HOH B 42 1097 1097 HOH HOH . F 4 HOH B 43 1098 1098 HOH HOH . F 4 HOH B 44 1099 1099 HOH HOH . F 4 HOH B 45 1100 1100 HOH HOH . F 4 HOH B 46 1101 1101 HOH HOH . F 4 HOH B 47 1103 1103 HOH HOH . F 4 HOH B 48 1105 1105 HOH HOH . F 4 HOH B 49 1106 1106 HOH HOH . F 4 HOH B 50 1108 1108 HOH HOH . F 4 HOH B 51 1109 1109 HOH HOH . F 4 HOH B 52 1111 1111 HOH HOH . F 4 HOH B 53 1117 1117 HOH HOH . F 4 HOH B 54 1120 1120 HOH HOH . F 4 HOH B 55 1124 1124 HOH HOH . F 4 HOH B 56 1126 1126 HOH HOH . F 4 HOH B 57 1130 1130 HOH HOH . F 4 HOH B 58 1132 1132 HOH HOH . F 4 HOH B 59 1134 1134 HOH HOH . F 4 HOH B 60 1136 1136 HOH HOH . F 4 HOH B 61 1137 1137 HOH HOH . F 4 HOH B 62 1138 26 HOH MO6 . F 4 HOH B 63 1142 26 HOH MO6 . F 4 HOH B 64 1143 26 HOH MO6 . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 1.8 _atom_site.Cartn_y 31.378 _atom_site.Cartn_z 50.893 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 16.39 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 26 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 252 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #