data_407D # _model_server_result.job_id 8tIi_FwUkALKiWa8vD7VOQ _model_server_result.datetime_utc '2024-10-18 17:26:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 407d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":200}' # _entry.id 407D # _exptl.entry_id 407D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.143 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 120.47 _cell.angle_gamma 90 _cell.entry_id 407D _cell.length_a 60.44 _cell.length_b 30.51 _cell.length_c 42.76 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 407D _symmetry.cell_setting monoclinic _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog WATSON-CRICK hydrog1 A N3 DC 1 A DC 1 1_555 B N1 DG 10 B DG 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N4 DC 1 A DC 1 1_555 B O6 DG 10 B DG 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O2 DC 1 A DC 1 1_555 B N2 DG 10 B DG 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N3 DC 2 A DC 2 1_555 B N1 DG 9 B DG 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N4 DC 2 A DC 2 1_555 B O6 DG 9 B DG 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A O2 DC 2 A DC 2 1_555 B N2 DG 9 B DG 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N1 DA 3 A DA 3 1_555 B N3 DT 8 B DT 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N6 DA 3 A DA 3 1_555 B O4 DT 8 B DT 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N1 DG 4 A DG 4 1_555 B N3 DC 7 B DC 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N2 DG 4 A DG 4 1_555 B O2 DC 7 B DC 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A O6 DG 4 A DG 4 1_555 B N4 DC 7 B DC 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A N3 DT 5 A DT 5 1_555 B N1 DA 6 B DA 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A O4 DT 5 A DT 5 1_555 B N6 DA 6 B DA 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N1 DA 6 A DA 6 1_555 B N3 DT 5 B DT 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N6 DA 6 A DA 6 1_555 B O4 DT 5 B DT 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N3 DC 7 A DC 7 1_555 B N1 DG 4 B DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A N4 DC 7 A DC 7 1_555 B O6 DG 4 B DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A O2 DC 7 A DC 7 1_555 B N2 DG 4 B DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A N3 DT 8 A DT 8 1_555 B N1 DA 3 B DA 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A O4 DT 8 A DT 8 1_555 B N6 DA 3 B DA 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A N1 DG 9 A DG 9 1_555 B N3 DC 2 B DC 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A N2 DG 9 A DG 9 1_555 B O2 DC 2 B DC 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A O6 DG 9 A DG 9 1_555 B N4 DC 2 B DC 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A N1 DG 10 A DG 10 1_555 B N3 DC 1 B DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 A N2 DG 10 A DG 10 1_555 B O2 DC 1 B DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 A O6 DG 10 A DG 10 1_555 B N4 DC 1 B DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C4 H12 N O3 1' _chem_comp.formula_weight 122.143 _chem_comp.id TRS _chem_comp.mon_nstd_flag . _chem_comp.name 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'TRIS BUFFER' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 TRS sing 244 n n C C2 TRS sing 245 n n C C3 TRS sing 246 n n C N TRS sing 247 n n C1 O1 TRS sing 248 n n C1 H11 TRS sing 249 n n C1 H12 TRS sing 250 n n C2 O2 TRS sing 251 n n C2 H21 TRS sing 252 n n C2 H22 TRS sing 253 n n C3 O3 TRS sing 254 n n C3 H31 TRS sing 255 n n C3 H32 TRS sing 256 n n N HN1 TRS sing 257 n n N HN2 TRS sing 258 n n N HN3 TRS sing 259 n n O1 HO1 TRS sing 260 n n O2 HO2 TRS sing 261 n n O3 HO3 TRS sing 262 n n # _atom_sites.entry_id 407D _atom_sites.fract_transf_matrix[1][1] 0.016545 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.009734 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.032776 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.027134 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HP1 A 1 22 22 HP1 HP1 . D 3 TRS A 1 200 200 TRS TRS . E 2 HP1 B 1 21 21 HP1 HP1 . F 4 HOH A 1 23 23 HOH HOH . F 4 HOH A 2 30 30 HOH HOH . F 4 HOH A 3 31 31 HOH HOH . F 4 HOH A 4 32 32 HOH HOH . F 4 HOH A 5 33 33 HOH HOH . F 4 HOH A 6 34 34 HOH HOH . F 4 HOH A 7 35 35 HOH HOH . F 4 HOH A 8 38 38 HOH HOH . F 4 HOH A 9 39 39 HOH HOH . F 4 HOH A 10 40 40 HOH HOH . F 4 HOH A 11 43 43 HOH HOH . F 4 HOH A 12 44 44 HOH HOH . F 4 HOH A 13 46 46 HOH HOH . F 4 HOH A 14 48 48 HOH HOH . F 4 HOH A 15 50 50 HOH HOH . F 4 HOH A 16 52 52 HOH HOH . F 4 HOH A 17 56 56 HOH HOH . F 4 HOH A 18 59 59 HOH HOH . F 4 HOH A 19 60 60 HOH HOH . F 4 HOH A 20 61 61 HOH HOH . F 4 HOH A 21 64 64 HOH HOH . F 4 HOH A 22 67 67 HOH HOH . F 4 HOH A 23 70 70 HOH HOH . F 4 HOH A 24 75 75 HOH HOH . F 4 HOH A 25 76 76 HOH HOH . F 4 HOH A 26 77 77 HOH HOH . F 4 HOH A 27 78 78 HOH HOH . F 4 HOH A 28 81 81 HOH HOH . F 4 HOH A 29 83 83 HOH HOH . F 4 HOH A 30 88 88 HOH HOH . F 4 HOH A 31 89 89 HOH HOH . F 4 HOH A 32 91 91 HOH HOH . F 4 HOH A 33 93 93 HOH HOH . F 4 HOH A 34 95 95 HOH HOH . F 4 HOH A 35 100 100 HOH HOH . F 4 HOH A 36 107 107 HOH HOH . G 4 HOH B 1 26 26 HOH HOH . G 4 HOH B 2 27 27 HOH HOH . G 4 HOH B 3 28 28 HOH HOH . G 4 HOH B 4 29 29 HOH HOH . G 4 HOH B 5 37 37 HOH HOH . G 4 HOH B 6 41 41 HOH HOH . G 4 HOH B 7 42 42 HOH HOH . G 4 HOH B 8 47 47 HOH HOH . G 4 HOH B 9 49 49 HOH HOH . G 4 HOH B 10 51 51 HOH HOH . G 4 HOH B 11 53 53 HOH HOH . G 4 HOH B 12 54 54 HOH HOH . G 4 HOH B 13 55 55 HOH HOH . G 4 HOH B 14 57 57 HOH HOH . G 4 HOH B 15 62 62 HOH HOH . G 4 HOH B 16 63 63 HOH HOH . G 4 HOH B 17 65 65 HOH HOH . G 4 HOH B 18 68 68 HOH HOH . G 4 HOH B 19 69 69 HOH HOH . G 4 HOH B 20 72 72 HOH HOH . G 4 HOH B 21 74 74 HOH HOH . G 4 HOH B 22 82 82 HOH HOH . G 4 HOH B 23 85 85 HOH HOH . G 4 HOH B 24 86 86 HOH HOH . G 4 HOH B 25 90 90 HOH HOH . G 4 HOH B 26 104 104 HOH HOH . G 4 HOH B 27 105 105 HOH HOH . G 4 HOH B 28 109 109 HOH HOH . G 4 HOH B 29 112 112 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C TRS . . . D 3 18.442 1.622 14.3 1 87.94 ? C TRS 200 A 1 HETATM 2 C C1 TRS . . . D 3 18.108 1.976 12.8 1 86.24 ? C1 TRS 200 A 1 HETATM 3 C C2 TRS . . . D 3 18.292 2.844 15.056 1 88.17 ? C2 TRS 200 A 1 HETATM 4 C C3 TRS . . . D 3 19.963 1.152 14.507 1 85.96 ? C3 TRS 200 A 1 HETATM 5 N N TRS . . . D 3 17.554 0.471 14.589 1 74.76 ? N TRS 200 A 1 HETATM 6 O O1 TRS . . . D 3 18.078 0.805 12.032 1 80.7 ? O1 TRS 200 A 1 HETATM 7 O O2 TRS . . . D 3 17.472 2.646 16.261 1 86.16 ? O2 TRS 200 A 1 HETATM 8 O O3 TRS . . . D 3 20.863 2.087 13.781 1 90.69 ? O3 TRS 200 A 1 # _model_server_stats.io_time_ms 4 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 262 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 8 #