data_432D # _model_server_result.job_id SEpls5MtkGkDYG_r_Vaujw _model_server_result.datetime_utc '2024-10-18 14:24:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 432d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":21}' # _entry.id 432D # _exptl.entry_id 432D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 277.324 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-AMIDINE-2-(4-AMIDINO-PHENYL)INDOLE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 432D _cell.length_a 25.616 _cell.length_b 36.563 _cell.length_c 52.961 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 432D _symmetry.cell_setting orthorhombic _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog WATSON-CRICK hydrog1 A N3 DC 3 A DC 3 1_555 B N1 DG 10 B DG 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N4 DC 3 A DC 3 1_555 B O6 DG 10 B DG 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O2 DC 3 A DC 3 1_555 B N2 DG 10 B DG 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N3 DC 4 A DC 4 1_555 B N1 DG 9 B DG 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N4 DC 4 A DC 4 1_555 B O6 DG 9 B DG 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A O2 DC 4 A DC 4 1_555 B N2 DG 9 B DG 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N1 DA 5 A DA 5 1_555 B N3 DT 8 B DT 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N6 DA 5 A DA 5 1_555 B O4 DT 8 B DT 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N1 DA 6 A DA 6 1_555 B N3 DT 7 B DT 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N6 DA 6 A DA 6 1_555 B O4 DT 7 B DT 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N3 DT 7 A DT 7 1_555 B N1 DA 6 B DA 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A O4 DT 7 A DT 7 1_555 B N6 DA 6 B DA 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N3 DT 8 A DT 8 1_555 B N1 DA 5 B DA 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A O4 DT 8 A DT 8 1_555 B N6 DA 5 B DA 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N1 DG 9 A DG 9 1_555 B N3 DC 4 B DC 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N2 DG 9 A DG 9 1_555 B O2 DC 4 B DC 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A O6 DG 9 A DG 9 1_555 B N4 DC 4 B DC 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A N1 DG 10 A DG 10 1_555 B N3 DC 3 B DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A N2 DG 10 A DG 10 1_555 B O2 DC 3 B DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A O6 DG 10 A DG 10 1_555 B N4 DC 3 B DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C16 H15 N5' _chem_comp.formula_weight 277.324 _chem_comp.id DAP _chem_comp.mon_nstd_flag . _chem_comp.name 6-AMIDINE-2-(4-AMIDINO-PHENYL)INDOLE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 DAP sing 39 n y N1 C8 DAP sing 40 n y N1 HN1 DAP sing 41 n n C2 C3 DAP doub 42 n y C2 C1' DAP sing 43 n y C3 C9 DAP sing 44 n y C3 H3 DAP sing 45 n n C4 C5 DAP doub 46 n y C4 C9 DAP sing 47 n y C4 H4 DAP sing 48 n n C5 C6 DAP sing 49 n y C5 H5 DAP sing 50 n n C6 C7 DAP doub 51 n y C6 C10 DAP sing 52 n n C7 C8 DAP sing 53 n y C7 H7 DAP sing 54 n n C8 C9 DAP doub 55 n y C10 N2 DAP doub 56 n n C10 N3 DAP sing 57 n n N2 HN2 DAP sing 58 n n N3 HN31 DAP sing 59 n n N3 HN32 DAP sing 60 n n C1' C2' DAP doub 61 n y C1' C6' DAP sing 62 n y C2' C3' DAP sing 63 n y C2' H2' DAP sing 64 n n C3' C4' DAP doub 65 n y C3' H3' DAP sing 66 n n C4' C5' DAP sing 67 n y C4' C11 DAP sing 68 n n C5' C6' DAP doub 69 n y C5' H5' DAP sing 70 n n C6' H6' DAP sing 71 n n C11 N4 DAP doub 72 n n C11 N5 DAP sing 73 n n N4 HN4 DAP sing 74 n n N5 HN51 DAP sing 75 n n N5 HN52 DAP sing 76 n n # _atom_sites.entry_id 432D _atom_sites.fract_transf_matrix[1][1] 0.039038 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02735 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018882 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 DAP A 1 21 21 DAP DAP . D 3 HOH A 1 22 22 HOH HOH . D 3 HOH A 2 23 23 HOH HOH . D 3 HOH A 3 24 24 HOH HOH . D 3 HOH A 4 31 31 HOH HOH . D 3 HOH A 5 34 34 HOH HOH . D 3 HOH A 6 35 35 HOH HOH . D 3 HOH A 7 36 36 HOH HOH . D 3 HOH A 8 37 37 HOH HOH . D 3 HOH A 9 41 41 HOH HOH . D 3 HOH A 10 44 44 HOH HOH . D 3 HOH A 11 45 45 HOH HOH . D 3 HOH A 12 50 50 HOH HOH . D 3 HOH A 13 51 51 HOH HOH . D 3 HOH A 14 52 52 HOH HOH . D 3 HOH A 15 53 53 HOH HOH . D 3 HOH A 16 54 54 HOH HOH . D 3 HOH A 17 56 56 HOH HOH . D 3 HOH A 18 60 60 HOH HOH . D 3 HOH A 19 62 62 HOH HOH . D 3 HOH A 20 65 65 HOH HOH . D 3 HOH A 21 66 66 HOH HOH . D 3 HOH A 22 67 67 HOH HOH . D 3 HOH A 23 68 68 HOH HOH . D 3 HOH A 24 71 71 HOH HOH . D 3 HOH A 25 73 73 HOH HOH . D 3 HOH A 26 76 76 HOH HOH . D 3 HOH A 27 82 82 HOH HOH . D 3 HOH A 28 89 89 HOH HOH . D 3 HOH A 29 91 91 HOH HOH . D 3 HOH A 30 93 93 HOH HOH . D 3 HOH A 31 94 94 HOH HOH . D 3 HOH A 32 98 98 HOH HOH . D 3 HOH A 33 100 100 HOH HOH . E 3 HOH B 1 25 25 HOH HOH . E 3 HOH B 2 26 26 HOH HOH . E 3 HOH B 3 27 27 HOH HOH . E 3 HOH B 4 28 28 HOH HOH . E 3 HOH B 5 29 29 HOH HOH . E 3 HOH B 6 30 30 HOH HOH . E 3 HOH B 7 32 32 HOH HOH . E 3 HOH B 8 33 33 HOH HOH . E 3 HOH B 9 38 38 HOH HOH . E 3 HOH B 10 39 39 HOH HOH . E 3 HOH B 11 40 40 HOH HOH . E 3 HOH B 12 42 42 HOH HOH . E 3 HOH B 13 43 43 HOH HOH . E 3 HOH B 14 46 46 HOH HOH . E 3 HOH B 15 47 47 HOH HOH . E 3 HOH B 16 48 48 HOH HOH . E 3 HOH B 17 49 49 HOH HOH . E 3 HOH B 18 55 55 HOH HOH . E 3 HOH B 19 57 57 HOH HOH . E 3 HOH B 20 58 58 HOH HOH . E 3 HOH B 21 59 59 HOH HOH . E 3 HOH B 22 61 61 HOH HOH . E 3 HOH B 23 63 63 HOH HOH . E 3 HOH B 24 64 64 HOH HOH . E 3 HOH B 25 69 69 HOH HOH . E 3 HOH B 26 70 70 HOH HOH . E 3 HOH B 27 72 72 HOH HOH . E 3 HOH B 28 74 74 HOH HOH . E 3 HOH B 29 75 75 HOH HOH . E 3 HOH B 30 77 77 HOH HOH . E 3 HOH B 31 78 78 HOH HOH . E 3 HOH B 32 79 79 HOH HOH . E 3 HOH B 33 80 80 HOH HOH . E 3 HOH B 34 81 81 HOH HOH . E 3 HOH B 35 83 83 HOH HOH . E 3 HOH B 36 84 84 HOH HOH . E 3 HOH B 37 85 85 HOH HOH . E 3 HOH B 38 86 86 HOH HOH . E 3 HOH B 39 87 87 HOH HOH . E 3 HOH B 40 88 88 HOH HOH . E 3 HOH B 41 90 90 HOH HOH . E 3 HOH B 42 92 92 HOH HOH . E 3 HOH B 43 95 95 HOH HOH . E 3 HOH B 44 96 96 HOH HOH . E 3 HOH B 45 97 97 HOH HOH . E 3 HOH B 46 99 99 HOH HOH . E 3 HOH B 47 101 101 HOH HOH . E 3 HOH B 48 102 102 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 DAP . . . C 2 2.077 18.138 17.588 1 15.41 ? N1 DAP 21 A 1 HETATM 2 C C2 DAP . . . C 2 0.811 17.858 18.037 1 18.15 ? C2 DAP 21 A 1 HETATM 3 C C3 DAP . . . C 2 -0.057 18.855 17.61 1 18.93 ? C3 DAP 21 A 1 HETATM 4 C C4 DAP . . . C 2 0.453 20.926 16.067 1 18.89 ? C4 DAP 21 A 1 HETATM 5 C C5 DAP . . . C 2 1.492 21.512 15.374 1 20.23 ? C5 DAP 21 A 1 HETATM 6 C C6 DAP . . . C 2 2.797 21.011 15.414 1 23.56 ? C6 DAP 21 A 1 HETATM 7 C C7 DAP . . . C 2 3.133 19.877 16.159 1 20.61 ? C7 DAP 21 A 1 HETATM 8 C C8 DAP . . . C 2 2.041 19.284 16.819 1 16.8 ? C8 DAP 21 A 1 HETATM 9 C C9 DAP . . . C 2 0.729 19.758 16.797 1 18.34 ? C9 DAP 21 A 1 HETATM 10 C C10 DAP . . . C 2 3.874 21.681 14.666 1 26.57 ? C10 DAP 21 A 1 HETATM 11 N N2 DAP . . . C 2 3.771 22.943 14.328 1 34.92 ? N2 DAP 21 A 1 HETATM 12 N N3 DAP . . . C 2 4.957 21.009 14.36 1 22.25 ? N3 DAP 21 A 1 HETATM 13 C C1' DAP . . . C 2 0.603 16.796 19.058 1 20.82 ? C1' DAP 21 A 1 HETATM 14 C C2' DAP . . . C 2 -0.644 16.247 19.296 1 23.09 ? C2' DAP 21 A 1 HETATM 15 C C3' DAP . . . C 2 -0.834 15.254 20.253 1 24.11 ? C3' DAP 21 A 1 HETATM 16 C C4' DAP . . . C 2 0.272 14.833 20.975 1 24.03 ? C4' DAP 21 A 1 HETATM 17 C C5' DAP . . . C 2 1.504 15.36 20.749 1 21.45 ? C5' DAP 21 A 1 HETATM 18 C C6' DAP . . . C 2 1.709 16.342 19.786 1 19.68 ? C6' DAP 21 A 1 HETATM 19 C C11 DAP . . . C 2 0.081 13.776 21.988 1 30.13 ? C11 DAP 21 A 1 HETATM 20 N N4 DAP . . . C 2 1.022 13.568 22.885 1 37.26 ? N4 DAP 21 A 1 HETATM 21 N N5 DAP . . . C 2 -1.041 13.09 21.974 1 30.44 ? N5 DAP 21 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 21 #