data_435D # _model_server_result.job_id Ebn0giqI_bV67CfAaesf5A _model_server_result.datetime_utc '2024-11-12 21:01:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 435d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1}' # _entry.id 435D # _exptl.entry_id 435D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 104.29 _cell.angle_beta 104.22 _cell.angle_gamma 91.66 _cell.entry_id 435D _cell.length_a 26.68 _cell.length_b 26.697 _cell.length_c 30.459 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 435D _symmetry.cell_setting triclinic _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,G,H 1 1 C,D,F,I,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 E NA NA . A NA 8 1_555 G O HOH . A HOH 1113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? metalc ? metalc2 E NA NA . A NA 8 1_555 G O HOH . A HOH 1137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc3 I O HOH . C HOH 1076 1_555 F NA NA . D NA 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.414 ? metalc ? metalc4 F NA NA . D NA 1 1_555 J O HOH . D HOH 1048 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? metalc ? metalc5 F NA NA . D NA 1 1_555 J O HOH . D HOH 1053 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? metalc ? metalc6 F NA NA . D NA 1 1_555 J O HOH . D HOH 1115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? hydrog WATSON-CRICK hydrog1 A N3 U 1 A U 1 1_555 B N1 A 7 B A 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A O4 U 1 A U 1 1_555 B N6 A 7 B A 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A N1 A 2 A A 2 1_555 B N3 U 6 B U 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N6 A 2 A A 2 1_555 B O4 U 6 B U 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N1 G 3 A G 3 1_555 B N3 C 5 B C 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A N2 G 3 A G 3 1_555 B O2 C 5 B C 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A O6 G 3 A G 3 1_555 B N4 C 5 B C 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N3 C 4 A C 4 1_555 B N1 G 4 B G 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N4 C 4 A C 4 1_555 B O6 G 4 B G 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A O2 C 4 A C 4 1_555 B N2 G 4 B G 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N3 C 5 A C 5 1_555 B N1 G 3 B G 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A N4 C 5 A C 5 1_555 B O6 G 3 B G 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A O2 C 5 A C 5 1_555 B N2 G 3 B G 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N3 C 6 A C 6 1_555 B N1 G 2 B G 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N4 C 6 A C 6 1_555 B O6 G 2 B G 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A O2 C 6 A C 6 1_555 B N2 G 2 B G 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A N3 C 7 A C 7 1_555 B N1 G 1 B G 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A N4 C 7 A C 7 1_555 B O6 G 1 B G 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A O2 C 7 A C 7 1_555 B N2 G 1 B G 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 C N3 U 1 C U 1 1_555 D N1 A 7 D A 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 C O4 U 1 C U 1 1_555 D N6 A 7 D A 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 C N1 A 2 C A 2 1_555 D N3 U 6 D U 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 C N6 A 2 C A 2 1_555 D O4 U 6 D U 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 C N1 G 3 C G 3 1_555 D N3 C 5 D C 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 C N2 G 3 C G 3 1_555 D O2 C 5 D C 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 C O6 G 3 C G 3 1_555 D N4 C 5 D C 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 C N3 C 4 C C 4 1_555 D N1 G 4 D G 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 C N4 C 4 C C 4 1_555 D O6 G 4 D G 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 C O2 C 4 C C 4 1_555 D N2 G 4 D G 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 C N3 C 5 C C 5 1_555 D N1 G 3 D G 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 C N4 C 5 C C 5 1_555 D O6 G 3 D G 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog32 C O2 C 5 C C 5 1_555 D N2 G 3 D G 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog33 C N3 C 6 C C 6 1_555 D N1 G 2 D G 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog34 C N4 C 6 C C 6 1_555 D O6 G 2 D G 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog35 C O2 C 6 C C 6 1_555 D N2 G 2 D G 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog36 C N3 C 7 C C 7 1_555 D N1 G 1 D G 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog37 C N4 C 7 C C 7 1_555 D O6 G 1 D G 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog38 C O2 C 7 C C 7 1_555 D N2 G 1 D G 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 435D _atom_sites.fract_transf_matrix[1][1] 0.037481 _atom_sites.fract_transf_matrix[1][2] 0.001086 _atom_sites.fract_transf_matrix[1][3] 0.010137 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.037473 _atom_sites.fract_transf_matrix[2][3] 0.010177 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.035096 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 NA A 1 8 2 NA NA . F 3 NA D 1 1 1 NA NA . G 4 HOH A 1 996 996 HOH HOH . G 4 HOH A 2 999 999 HOH HOH . G 4 HOH A 3 1000 1000 HOH HOH . G 4 HOH A 4 1001 1001 HOH HOH . G 4 HOH A 5 1004 1004 HOH HOH . G 4 HOH A 6 1012 1012 HOH HOH . G 4 HOH A 7 1014 1014 HOH HOH . G 4 HOH A 8 1019 1019 HOH HOH . G 4 HOH A 9 1021 1021 HOH HOH . G 4 HOH A 10 1023 1023 HOH HOH . G 4 HOH A 11 1024 1024 HOH HOH . G 4 HOH A 12 1028 1028 HOH HOH . G 4 HOH A 13 1029 1029 HOH HOH . G 4 HOH A 14 1032 1032 HOH HOH . G 4 HOH A 15 1033 1033 HOH HOH . G 4 HOH A 16 1047 1047 HOH HOH . G 4 HOH A 17 1051 1051 HOH HOH . G 4 HOH A 18 1052 1052 HOH HOH . G 4 HOH A 19 1057 1057 HOH HOH . G 4 HOH A 20 1064 1064 HOH HOH . G 4 HOH A 21 1075 1075 HOH HOH . G 4 HOH A 22 1090 1090 HOH HOH . G 4 HOH A 23 1091 1091 HOH HOH . G 4 HOH A 24 1096 1096 HOH HOH . G 4 HOH A 25 1103 1103 HOH HOH . G 4 HOH A 26 1104 1104 HOH HOH . G 4 HOH A 27 1113 1113 HOH HOH . G 4 HOH A 28 1119 1119 HOH HOH . G 4 HOH A 29 1120 1120 HOH HOH . G 4 HOH A 30 1130 1130 HOH HOH . G 4 HOH A 31 1132 1132 HOH HOH . G 4 HOH A 32 1136 1136 HOH HOH . G 4 HOH A 33 1137 1137 HOH HOH . H 4 HOH B 1 1002 1002 HOH HOH . H 4 HOH B 2 1006 1006 HOH HOH . H 4 HOH B 3 1013 1013 HOH HOH . H 4 HOH B 4 1016 1016 HOH HOH . H 4 HOH B 5 1018 1018 HOH HOH . H 4 HOH B 6 1025 1025 HOH HOH . H 4 HOH B 7 1030 1030 HOH HOH . H 4 HOH B 8 1034 1034 HOH HOH . H 4 HOH B 9 1037 1037 HOH HOH . H 4 HOH B 10 1049 1049 HOH HOH . H 4 HOH B 11 1054 1054 HOH HOH . H 4 HOH B 12 1061 1061 HOH HOH . H 4 HOH B 13 1065 1065 HOH HOH . H 4 HOH B 14 1066 1066 HOH HOH . H 4 HOH B 15 1070 1070 HOH HOH . H 4 HOH B 16 1072 1072 HOH HOH . H 4 HOH B 17 1077 1077 HOH HOH . H 4 HOH B 18 1078 1078 HOH HOH . H 4 HOH B 19 1082 1082 HOH HOH . H 4 HOH B 20 1088 1088 HOH HOH . H 4 HOH B 21 1093 1093 HOH HOH . H 4 HOH B 22 1098 1098 HOH HOH . H 4 HOH B 23 1099 1099 HOH HOH . H 4 HOH B 24 1111 1111 HOH HOH . H 4 HOH B 25 1114 1114 HOH HOH . H 4 HOH B 26 1125 1125 HOH HOH . H 4 HOH B 27 1127 1127 HOH HOH . H 4 HOH B 28 1128 1128 HOH HOH . H 4 HOH B 29 1133 1133 HOH HOH . H 4 HOH B 30 1138 1138 HOH HOH . H 4 HOH B 31 1139 1139 HOH HOH . I 4 HOH C 1 1005 1005 HOH HOH . I 4 HOH C 2 1008 1008 HOH HOH . I 4 HOH C 3 1010 1010 HOH HOH . I 4 HOH C 4 1020 1020 HOH HOH . I 4 HOH C 5 1026 1026 HOH HOH . I 4 HOH C 6 1031 1031 HOH HOH . I 4 HOH C 7 1035 1035 HOH HOH . I 4 HOH C 8 1038 1038 HOH HOH . I 4 HOH C 9 1039 1039 HOH HOH . I 4 HOH C 10 1042 1042 HOH HOH . I 4 HOH C 11 1055 1055 HOH HOH . I 4 HOH C 12 1056 1056 HOH HOH . I 4 HOH C 13 1063 1063 HOH HOH . I 4 HOH C 14 1069 1069 HOH HOH . I 4 HOH C 15 1076 1076 HOH HOH . I 4 HOH C 16 1081 1081 HOH HOH . I 4 HOH C 17 1084 1084 HOH HOH . I 4 HOH C 18 1085 1085 HOH HOH . I 4 HOH C 19 1086 1086 HOH HOH . I 4 HOH C 20 1087 1087 HOH HOH . I 4 HOH C 21 1089 1089 HOH HOH . I 4 HOH C 22 1094 1094 HOH HOH . I 4 HOH C 23 1097 1097 HOH HOH . I 4 HOH C 24 1100 1100 HOH HOH . I 4 HOH C 25 1101 1101 HOH HOH . I 4 HOH C 26 1106 1106 HOH HOH . I 4 HOH C 27 1109 1109 HOH HOH . I 4 HOH C 28 1116 1116 HOH HOH . I 4 HOH C 29 1117 1117 HOH HOH . I 4 HOH C 30 1126 1126 HOH HOH . I 4 HOH C 31 1129 1129 HOH HOH . J 4 HOH D 1 997 997 HOH HOH . J 4 HOH D 2 998 998 HOH HOH . J 4 HOH D 3 1003 1003 HOH HOH . J 4 HOH D 4 1007 1007 HOH HOH . J 4 HOH D 5 1009 1009 HOH HOH . J 4 HOH D 6 1015 1015 HOH HOH . J 4 HOH D 7 1017 1017 HOH HOH . J 4 HOH D 8 1036 1036 HOH HOH . J 4 HOH D 9 1040 1040 HOH HOH . J 4 HOH D 10 1041 1041 HOH HOH . J 4 HOH D 11 1043 1043 HOH HOH . J 4 HOH D 12 1045 1045 HOH HOH . J 4 HOH D 13 1046 1046 HOH HOH . J 4 HOH D 14 1048 1048 HOH HOH . J 4 HOH D 15 1050 1050 HOH HOH . J 4 HOH D 16 1053 1053 HOH HOH . J 4 HOH D 17 1058 1058 HOH HOH . J 4 HOH D 18 1059 1059 HOH HOH . J 4 HOH D 19 1060 1060 HOH HOH . J 4 HOH D 20 1062 1062 HOH HOH . J 4 HOH D 21 1067 1067 HOH HOH . J 4 HOH D 22 1071 1071 HOH HOH . J 4 HOH D 23 1074 1074 HOH HOH . J 4 HOH D 24 1079 1079 HOH HOH . J 4 HOH D 25 1080 1080 HOH HOH . J 4 HOH D 26 1083 1083 HOH HOH . J 4 HOH D 27 1092 1092 HOH HOH . J 4 HOH D 28 1095 1095 HOH HOH . J 4 HOH D 29 1105 1105 HOH HOH . J 4 HOH D 30 1107 1107 HOH HOH . J 4 HOH D 31 1108 1108 HOH HOH . J 4 HOH D 32 1110 1110 HOH HOH . J 4 HOH D 33 1115 1115 HOH HOH . J 4 HOH D 34 1118 1118 HOH HOH . J 4 HOH D 35 1121 1121 HOH HOH . J 4 HOH D 36 1131 1131 HOH HOH . J 4 HOH D 37 1134 1134 HOH HOH . J 4 HOH D 38 1135 1135 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 3 _atom_site.Cartn_x 7.761 _atom_site.Cartn_y 5.328 _atom_site.Cartn_z 18.994 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 19.84 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 1 _atom_site.auth_asym_id D _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 226 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 1 #