data_445D # _model_server_result.job_id 4k-ZB9t_IIy_y-NTLTG6gw _model_server_result.datetime_utc '2024-10-18 15:28:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 445d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":25}' # _entry.id 445D # _exptl.entry_id 445D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 535.403 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "2'-(3-IODOPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 445D _cell.length_a 25.38 _cell.length_b 40.71 _cell.length_c 66.24 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 445D _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog WATSON-CRICK hydrog1 A N3 DC 1 A DC 1 1_555 B N1 DG 12 B DG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N4 DC 1 A DC 1 1_555 B O6 DG 12 B DG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O2 DC 1 A DC 1 1_555 B N2 DG 12 B DG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N1 DG 2 A DG 2 1_555 B N3 DC 11 B DC 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N2 DG 2 A DG 2 1_555 B O2 DC 11 B DC 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A O6 DG 2 A DG 2 1_555 B N4 DC 11 B DC 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N3 DC 3 A DC 3 1_555 B N1 DG 10 B DG 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N4 DC 3 A DC 3 1_555 B O6 DG 10 B DG 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A O2 DC 3 A DC 3 1_555 B N2 DG 10 B DG 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N1 DG 4 A DG 4 1_555 B N3 DC 9 B DC 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N2 DG 4 A DG 4 1_555 B O2 DC 9 B DC 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A O6 DG 4 A DG 4 1_555 B N4 DC 9 B DC 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N1 DA 5 A DA 5 1_555 B N3 DT 8 B DT 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N6 DA 5 A DA 5 1_555 B O4 DT 8 B DT 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N1 DA 6 A DA 6 1_555 B N3 DT 7 B DT 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N6 DA 6 A DA 6 1_555 B O4 DT 7 B DT 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A N3 DT 7 A DT 7 1_555 B N1 DA 6 B DA 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A O4 DT 7 A DT 7 1_555 B N6 DA 6 B DA 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A N3 DT 8 A DT 8 1_555 B N1 DA 5 B DA 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A O4 DT 8 A DT 8 1_555 B N6 DA 5 B DA 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A N3 DC 9 A DC 9 1_555 B N1 DG 4 B DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A N4 DC 9 A DC 9 1_555 B O6 DG 4 B DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A O2 DC 9 A DC 9 1_555 B N2 DG 4 B DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A N1 DG 10 A DG 10 1_555 B N3 DC 3 B DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 A N2 DG 10 A DG 10 1_555 B O2 DC 3 B DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 A O6 DG 10 A DG 10 1_555 B N4 DC 3 B DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 A N3 DC 11 A DC 11 1_555 B N1 DG 2 B DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 A N4 DC 11 A DC 11 1_555 B O6 DG 2 B DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 A O2 DC 11 A DC 11 1_555 B N2 DG 2 B DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 A N1 DG 12 A DG 12 1_555 B N3 DC 1 B DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 A N2 DG 12 A DG 12 1_555 B O2 DC 1 B DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog32 A O6 DG 12 A DG 12 1_555 B N4 DC 1 B DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C25 H24 I N6 1' _chem_comp.formula_weight 535.403 _chem_comp.id IA _chem_comp.mon_nstd_flag . _chem_comp.name "2'-(3-IODOPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C2 IA doub 150 n y C C4 IA sing 151 n y C H IA sing 152 n n C1 C3 IA doub 153 n y C1 C5 IA sing 154 n y C1 C6 IA sing 155 n y C2 C3 IA sing 156 n y C2 H2 IA sing 157 n n C3 H3 IA sing 158 n n C4 C5 IA doub 159 n y C4 I IA sing 160 n n C5 H5 IA sing 161 n n C6 N1 IA sing 162 n y C6 N2 IA doub 163 n y C7 C8 IA doub 164 n y C7 C12 IA sing 165 n y C7 N1 IA sing 166 n y C8 C9 IA sing 167 n y C8 N2 IA sing 168 n y C9 C10 IA doub 169 n y C9 H9 IA sing 170 n n C10 C11 IA sing 171 n y C10 H10 IA sing 172 n n C11 C12 IA doub 173 n y C11 C13 IA sing 174 n y C12 H12 IA sing 175 n n N1 HN1 IA sing 176 n n C13 N3 IA sing 177 n y C13 N4 IA doub 178 n y C14 C15 IA doub 179 n y C14 C19 IA sing 180 n y C14 N3 IA sing 181 n y C15 C16 IA sing 182 n y C15 N4 IA sing 183 n y C16 C17 IA doub 184 n y C16 H16 IA sing 185 n n C17 C18 IA sing 186 n y C17 H17 IA sing 187 n n C18 C19 IA doub 188 n y C18 N6 IA sing 189 n n C19 H19 IA sing 190 n n N3 HN3 IA sing 191 n n N6 C20 IA sing 192 n n N6 C23 IA sing 193 n n N7 C21 IA sing 194 n n N7 C22 IA sing 195 n n N7 C24 IA sing 196 n n N7 HN7 IA sing 197 n n C20 C21 IA sing 198 n n C20 H201 IA sing 199 n n C20 H202 IA sing 200 n n C21 H211 IA sing 201 n n C21 H212 IA sing 202 n n C22 C23 IA sing 203 n n C22 H221 IA sing 204 n n C22 H222 IA sing 205 n n C23 H231 IA sing 206 n n C23 H232 IA sing 207 n n C24 H241 IA sing 208 n n C24 H242 IA sing 209 n n C24 H243 IA sing 210 n n # _atom_sites.entry_id 445D _atom_sites.fract_transf_matrix[1][1] 0.039401 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024564 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015097 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id C _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id IA _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 25 _pdbx_nonpoly_scheme.auth_seq_num 25 _pdbx_nonpoly_scheme.pdb_mon_id IA _pdbx_nonpoly_scheme.auth_mon_id IA _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C IA . A . C 2 8.455 19.883 13.305 0.2 38.51 ? C IA 25 A 1 HETATM 2 C C IA . B . C 2 10.135 26.943 3.633 0.4 58.14 ? C IA 25 A 1 HETATM 3 C C1 IA . A . C 2 8.868 21.491 10.794 0.2 35.8 ? C1 IA 25 A 1 HETATM 4 C C1 IA . B . C 2 9.522 25.198 6.016 0.4 53.16 ? C1 IA 25 A 1 HETATM 5 C C2 IA . A . C 2 9.796 20.173 12.74 0.2 37.12 ? C2 IA 25 A 1 HETATM 6 C C2 IA . B . C 2 8.975 27.058 4.542 0.4 56.59 ? C2 IA 25 A 1 HETATM 7 C C3 IA . A . C 2 9.992 20.975 11.483 0.2 36.15 ? C3 IA 25 A 1 HETATM 8 C C3 IA . B . C 2 8.682 26.231 5.675 0.4 55.36 ? C3 IA 25 A 1 HETATM 9 C C4 IA . A . C 2 7.416 20.525 12.479 0.2 38.63 ? C4 IA 25 A 1 HETATM 10 C C4 IA . B . C 2 10.987 25.819 4.061 0.4 58.42 ? C4 IA 25 A 1 HETATM 11 C C5 IA . A . C 2 7.612 21.294 11.286 0.2 37.18 ? C5 IA 25 A 1 HETATM 12 C C5 IA . B . C 2 10.677 24.958 5.238 0.4 55.88 ? C5 IA 25 A 1 HETATM 13 C C6 IA . A . C 2 8.95 22.259 9.665 0.2 35.4 ? C6 IA 25 A 1 HETATM 14 C C6 IA . B . C 2 9.187 24.411 7.15 0.4 50.68 ? C6 IA 25 A 1 HETATM 15 C C7 IA . A . C 2 9.121 23.413 8.011 0.2 35.96 ? C7 IA 25 A 1 HETATM 16 C C7 IA . B . C 2 9.333 23.109 8.964 0.4 49.37 ? C7 IA 25 A 1 HETATM 17 C C8 IA . A . C 2 8.238 24.077 7.907 0.2 36.03 ? C8 IA 25 A 1 HETATM 18 C C8 IA . B . C 2 7.949 23.424 8.677 0.4 49.01 ? C8 IA 25 A 1 HETATM 19 C C9 IA . A . C 2 7.608 25.079 7.017 0.2 37.1 ? C9 IA 25 A 1 HETATM 20 C C9 IA . B . C 2 6.829 22.921 9.515 0.4 49.23 ? C9 IA 25 A 1 HETATM 21 C C10 IA . A . C 2 8.364 25.425 5.889 0.2 37.6 ? C10 IA 25 A 1 HETATM 22 C C10 IA . B . C 2 7.219 22.076 10.652 0.4 48.47 ? C10 IA 25 A 1 HETATM 23 C C11 IA . A . C 2 9.601 24.798 5.745 0.2 37.83 ? C11 IA 25 A 1 HETATM 24 C C11 IA . B . C 2 8.613 21.78 10.932 0.4 48.55 ? C11 IA 25 A 1 HETATM 25 C C12 IA . A . C 2 10.052 23.82 6.829 0.2 36.77 ? C12 IA 25 A 1 HETATM 26 C C12 IA . B . C 2 9.669 22.269 10.106 0.4 49.52 ? C12 IA 25 A 1 HETATM 27 N N1 IA . A . C 2 9.681 22.988 9.18 0.2 35.81 ? N1 IA 25 A 1 HETATM 28 N N1 IA . B . C 2 10.06 23.764 7.958 0.4 49.87 ? N1 IA 25 A 1 HETATM 29 N N2 IA . A . C 2 7.822 23.227 9.097 0.2 35.3 ? N2 IA 25 A 1 HETATM 30 N N2 IA . B . C 2 7.929 24.199 7.594 0.4 49.11 ? N2 IA 25 A 1 HETATM 31 C C13 IA . A . C 2 10.374 25.192 4.616 0.2 39.74 ? C13 IA 25 A 1 HETATM 32 C C13 IA . B . C 2 9.02 20.934 12.06 0.4 49.29 ? C13 IA 25 A 1 HETATM 33 C C14 IA . A . C 2 11.939 25.301 2.989 0.2 42.45 ? C14 IA 25 A 1 HETATM 34 C C14 IA . B . C 2 8.713 19.627 13.882 0.4 50.34 ? C14 IA 25 A 1 HETATM 35 C C15 IA . A . C 2 11.071 26.448 2.844 0.2 41.94 ? C15 IA 25 A 1 HETATM 36 C C15 IA . B . C 2 10.141 19.734 13.632 0.4 49.56 ? C15 IA 25 A 1 HETATM 37 C C16 IA . A . C 2 11.251 27.494 1.749 0.2 42.91 ? C16 IA 25 A 1 HETATM 38 C C16 IA . B . C 2 11.162 19.053 14.487 0.4 50.08 ? C16 IA 25 A 1 HETATM 39 C C17 IA . A . C 2 12.402 27.267 0.85 0.2 44.46 ? C17 IA 25 A 1 HETATM 40 C C17 IA . B . C 2 10.631 18.249 15.592 0.4 51 ? C17 IA 25 A 1 HETATM 41 C C18 IA . A . C 2 13.286 26.046 1.027 0.2 44.97 ? C18 IA 25 A 1 HETATM 42 C C18 IA . B . C 2 9.148 18.149 15.82 0.4 51.6 ? C18 IA 25 A 1 HETATM 43 C C19 IA . A . C 2 13.053 25.099 2.069 0.2 43.74 ? C19 IA 25 A 1 HETATM 44 C C19 IA . B . C 2 8.207 18.828 14.985 0.4 51.14 ? C19 IA 25 A 1 HETATM 45 N N3 IA . A . C 2 11.43 24.568 4.114 0.2 41.13 ? N3 IA 25 A 1 HETATM 46 N N3 IA . B . C 2 8.13 20.404 12.878 0.4 49.88 ? N3 IA 25 A 1 HETATM 47 N N4 IA . A . C 2 10.154 26.351 3.809 0.2 41 ? N4 IA 25 A 1 HETATM 48 N N4 IA . B . C 2 10.303 20.516 12.55 0.4 49.11 ? N4 IA 25 A 1 HETATM 49 N N6 IA . A . C 2 14.337 25.842 0.037 0.2 45.97 ? N6 IA 25 A 1 HETATM 50 N N6 IA . B . C 2 8.758 17.304 16.887 0.4 52.33 ? N6 IA 25 A 1 HETATM 51 N N7 IA . A . C 2 16.352 25.282 -1.901 0.2 46.89 ? N7 IA 25 A 1 HETATM 52 N N7 IA . B . C 2 8.247 15.3 18.875 0.4 56.31 ? N7 IA 25 A 1 HETATM 53 C C20 IA . A . C 2 14 25.021 -1.27 0.2 46.12 ? C20 IA 25 A 1 HETATM 54 C C20 IA . B . C 2 7.623 17.582 17.979 0.4 53.28 ? C20 IA 25 A 1 HETATM 55 C C21 IA . A . C 2 15.328 24.212 -1.372 0.2 46.62 ? C21 IA 25 A 1 HETATM 56 C C21 IA . B . C 2 8.281 16.851 19.23 0.4 54.77 ? C21 IA 25 A 1 HETATM 57 C C22 IA . A . C 2 16.535 26.334 -0.748 0.2 46.87 ? C22 IA 25 A 1 HETATM 58 C C22 IA . B . C 2 9.194 15.118 17.637 0.4 56.09 ? C22 IA 25 A 1 HETATM 59 C C23 IA . A . C 2 15.136 27.031 -0.657 0.2 46.43 ? C23 IA 25 A 1 HETATM 60 C C23 IA . B . C 2 8.361 15.821 16.533 0.4 53.96 ? C23 IA 25 A 1 HETATM 61 C C24 IA . A . C 2 17.618 24.472 -1.602 0.2 46.38 ? C24 IA 25 A 1 HETATM 62 C C24 IA . B . C 2 9.247 14.803 19.936 0.4 57.59 ? C24 IA 25 A 1 HETATM 63 I I IA . A . C 2 5.383 20.333 13.046 0.2 43.37 ? I IA 25 A 1 HETATM 64 I I IA . B . C 2 12.609 25.439 3.049 0.4 65.38 ? I IA 25 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 257 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 64 #