data_447D # _model_server_result.job_id pN2ESswu-oYFxq2KUxnLdg _model_server_result.datetime_utc '2024-10-18 14:29:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 447d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":25}' # _entry.id 447D # _exptl.entry_id 447D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 451.566 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "2'-(4-DIMETHYLAMINOPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 447D _cell.length_a 24.16 _cell.length_b 38.62 _cell.length_c 63.86 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 447D _symmetry.cell_setting orthorhombic _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog WATSON-CRICK hydrog1 A N3 DC 1 A DC 1 1_555 B N1 DG 12 B DG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N4 DC 1 A DC 1 1_555 B O6 DG 12 B DG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O2 DC 1 A DC 1 1_555 B N2 DG 12 B DG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N1 DG 2 A DG 2 1_555 B N3 DC 11 B DC 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N2 DG 2 A DG 2 1_555 B O2 DC 11 B DC 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A O6 DG 2 A DG 2 1_555 B N4 DC 11 B DC 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N3 DC 3 A DC 3 1_555 B N1 DG 10 B DG 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N4 DC 3 A DC 3 1_555 B O6 DG 10 B DG 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A O2 DC 3 A DC 3 1_555 B N2 DG 10 B DG 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N1 DG 4 A DG 4 1_555 B N3 DC 9 B DC 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N2 DG 4 A DG 4 1_555 B O2 DC 9 B DC 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A O6 DG 4 A DG 4 1_555 B N4 DC 9 B DC 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N1 DA 5 A DA 5 1_555 B N3 DT 8 B DT 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N6 DA 5 A DA 5 1_555 B O4 DT 8 B DT 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N1 DA 6 A DA 6 1_555 B N3 DT 7 B DT 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N6 DA 6 A DA 6 1_555 B O4 DT 7 B DT 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DT-DA PAIR' hydrog17 A N3 DT 7 A DT 7 1_555 B N1 DA 6 B DA 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A N3 DT 8 A DT 8 1_555 B N1 DA 5 B DA 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A O4 DT 8 A DT 8 1_555 B N6 DA 5 B DA 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A N3 DC 9 A DC 9 1_555 B N1 DG 4 B DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A N4 DC 9 A DC 9 1_555 B O6 DG 4 B DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A O2 DC 9 A DC 9 1_555 B N2 DG 4 B DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A N1 DG 10 A DG 10 1_555 B N3 DC 3 B DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A N2 DG 10 A DG 10 1_555 B O2 DC 3 B DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 A O6 DG 10 A DG 10 1_555 B N4 DC 3 B DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 A N3 DC 11 A DC 11 1_555 B N1 DG 2 B DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 A N4 DC 11 A DC 11 1_555 B O6 DG 2 B DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 A O2 DC 11 A DC 11 1_555 B N2 DG 2 B DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 A N1 DG 12 A DG 12 1_555 B N3 DC 1 B DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 A N2 DG 12 A DG 12 1_555 B O2 DC 1 B DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 A O6 DG 12 A DG 12 1_555 B N4 DC 1 B DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C27 H29 N7' _chem_comp.formula_weight 451.566 _chem_comp.id BBZ _chem_comp.mon_nstd_flag . _chem_comp.name "2'-(4-DIMETHYLAMINOPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C2 BBZ doub 1 n y C C4 BBZ sing 2 n y C N BBZ sing 3 n n C1 C3 BBZ doub 4 n y C1 C5 BBZ sing 5 n y C1 C6 BBZ sing 6 n y C2 C3 BBZ sing 7 n y C2 H2 BBZ sing 8 n n C3 H3 BBZ sing 9 n n C4 C5 BBZ doub 10 n y C4 H4 BBZ sing 11 n n C5 H5 BBZ sing 12 n n N CN1 BBZ sing 13 n n N CN2 BBZ sing 14 n n C6 N1 BBZ doub 15 n y C6 N2 BBZ sing 16 n y C7 C8 BBZ doub 17 n y C7 C12 BBZ sing 18 n y C7 N1 BBZ sing 19 n y C8 C9 BBZ sing 20 n y C8 N2 BBZ sing 21 n y C9 C10 BBZ doub 22 n y C9 H9 BBZ sing 23 n n C10 C11 BBZ sing 24 n y C10 H10 BBZ sing 25 n n C11 C12 BBZ doub 26 n y C11 C13 BBZ sing 27 n y C12 H12 BBZ sing 28 n n N2 HN2 BBZ sing 29 n n C13 N3 BBZ doub 30 n y C13 N4 BBZ sing 31 n y C14 C15 BBZ doub 32 n y C14 N3 BBZ sing 33 n y C14 C19 BBZ sing 34 n y C15 C16 BBZ sing 35 n y C15 N4 BBZ sing 36 n y C16 C17 BBZ doub 37 n y C16 H16 BBZ sing 38 n n C17 C18 BBZ sing 39 n y C17 H17 BBZ sing 40 n n C18 C19 BBZ doub 41 n y C18 N5 BBZ sing 42 n n N4 HN4 BBZ sing 43 n n C19 H19 BBZ sing 44 n n N5 C20 BBZ sing 45 n n N5 C23 BBZ sing 46 n n N6 C21 BBZ sing 47 n n N6 C22 BBZ sing 48 n n N6 C24 BBZ sing 49 n n C20 C21 BBZ sing 50 n n C20 H201 BBZ sing 51 n n C20 H202 BBZ sing 52 n n C21 H211 BBZ sing 53 n n C21 H212 BBZ sing 54 n n C22 C23 BBZ sing 55 n n C22 H221 BBZ sing 56 n n C22 H222 BBZ sing 57 n n C23 H231 BBZ sing 58 n n C23 H232 BBZ sing 59 n n C24 H241 BBZ sing 60 n n C24 H242 BBZ sing 61 n n C24 H243 BBZ sing 62 n n CN1 HN11 BBZ sing 63 n n CN1 HN12 BBZ sing 64 n n CN1 HN13 BBZ sing 65 n n CN2 HN21 BBZ sing 66 n n CN2 HN22 BBZ sing 67 n n CN2 HN23 BBZ sing 68 n n # _atom_sites.entry_id 447D _atom_sites.fract_transf_matrix[1][1] 0.041391 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.025893 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015659 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 BBZ B 1 25 25 BBZ BBZ . D 3 HOH A 1 29 29 HOH TIP . D 3 HOH A 2 30 30 HOH TIP . D 3 HOH A 3 34 34 HOH TIP . D 3 HOH A 4 38 38 HOH TIP . E 3 HOH B 1 26 26 HOH TIP . E 3 HOH B 2 27 27 HOH TIP . E 3 HOH B 3 28 28 HOH TIP . E 3 HOH B 4 31 31 HOH TIP . E 3 HOH B 5 32 32 HOH TIP . E 3 HOH B 6 33 33 HOH TIP . E 3 HOH B 7 36 36 HOH TIP . E 3 HOH B 8 37 37 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C BBZ . . . C 2 10.083 18.517 15.664 1 22.17 ? C BBZ 25 B 1 HETATM 2 C C1 BBZ . . . C 2 8.93 19.861 13.194 1 18.56 ? C1 BBZ 25 B 1 HETATM 3 C C2 BBZ . . . C 2 10.834 19.387 14.773 1 21.37 ? C2 BBZ 25 B 1 HETATM 4 C C3 BBZ . . . C 2 10.267 20.035 13.58 1 19.03 ? C3 BBZ 25 B 1 HETATM 5 C C4 BBZ . . . C 2 8.682 18.384 15.182 1 21.81 ? C4 BBZ 25 B 1 HETATM 6 C C5 BBZ . . . C 2 8.121 19.031 13.992 1 16.22 ? C5 BBZ 25 B 1 HETATM 7 N N BBZ . . . C 2 10.667 17.864 16.882 1 20.87 ? N BBZ 25 B 1 HETATM 8 C C6 BBZ . . . C 2 8.401 20.556 11.997 1 18.28 ? C6 BBZ 25 B 1 HETATM 9 C C7 BBZ . . . C 2 8.423 21.635 9.994 1 20.52 ? C7 BBZ 25 B 1 HETATM 10 C C8 BBZ . . . C 2 7.096 21.547 10.496 1 23.37 ? C8 BBZ 25 B 1 HETATM 11 C C9 BBZ . . . C 2 5.951 22.11 9.754 1 22.67 ? C9 BBZ 25 B 1 HETATM 12 C C10 BBZ . . . C 2 6.259 22.765 8.486 1 21.08 ? C10 BBZ 25 B 1 HETATM 13 C C11 BBZ . . . C 2 7.615 22.845 8.005 1 19.67 ? C11 BBZ 25 B 1 HETATM 14 C C12 BBZ . . . C 2 8.696 22.289 8.735 1 18.04 ? C12 BBZ 25 B 1 HETATM 15 N N1 BBZ . . . C 2 9.214 20.988 10.986 1 20.37 ? N1 BBZ 25 B 1 HETATM 16 N N2 BBZ . . . C 2 7.131 20.895 11.695 1 18.87 ? N2 BBZ 25 B 1 HETATM 17 C C13 BBZ . . . C 2 7.869 23.514 6.753 1 21.12 ? C13 BBZ 25 B 1 HETATM 18 C C14 BBZ . . . C 2 8.838 24.115 4.762 1 27.29 ? C14 BBZ 25 B 1 HETATM 19 C C15 BBZ . . . C 2 7.683 24.904 5.053 1 28.06 ? C15 BBZ 25 B 1 HETATM 20 C C16 BBZ . . . C 2 7.206 25.958 4.167 1 30.05 ? C16 BBZ 25 B 1 HETATM 21 C C17 BBZ . . . C 2 7.983 26.164 2.96 1 37.02 ? C17 BBZ 25 B 1 HETATM 22 C C18 BBZ . . . C 2 9.174 25.353 2.656 1 37.86 ? C18 BBZ 25 B 1 HETATM 23 N N3 BBZ . . . C 2 8.926 23.234 5.876 1 25.4 ? N3 BBZ 25 B 1 HETATM 24 N N4 BBZ . . . C 2 7.191 24.487 6.219 1 25.11 ? N4 BBZ 25 B 1 HETATM 25 C C19 BBZ . . . C 2 9.61 24.332 3.54 1 31.79 ? C19 BBZ 25 B 1 HETATM 26 N N5 BBZ . . . C 2 9.973 25.548 1.438 1 42.54 ? N5 BBZ 25 B 1 HETATM 27 N N6 BBZ . . . C 2 11.581 26.234 -1.019 1 50.1 ? N6 BBZ 25 B 1 HETATM 28 C C20 BBZ . . . C 2 11.495 25.415 1.249 1 44.67 ? C20 BBZ 25 B 1 HETATM 29 C C21 BBZ . . . C 2 11.942 24.948 -0.185 1 49.73 ? C21 BBZ 25 B 1 HETATM 30 C C22 BBZ . . . C 2 10.197 26.797 -0.722 1 49.76 ? C22 BBZ 25 B 1 HETATM 31 C C23 BBZ . . . C 2 9.239 25.771 0.039 1 46.17 ? C23 BBZ 25 B 1 HETATM 32 C C24 BBZ . . . C 2 11.933 25.217 -2.164 1 48.5 ? C24 BBZ 25 B 1 HETATM 33 C CN1 BBZ . . . C 2 10.244 16.93 18.019 1 26.31 ? CN1 BBZ 25 B 1 HETATM 34 C CN2 BBZ . . . C 2 11.981 17.815 17.468 1 26.66 ? CN2 BBZ 25 B 1 # _model_server_stats.io_time_ms 45 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 253 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 34 #