data_451C # _model_server_result.job_id UdjWV4p1fLE6vR3teQbpfw _model_server_result.datetime_utc '2024-11-09 23:23:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 451c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":0}' # _entry.id 451C # _exptl.entry_id 451C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 451C _cell.length_a 29.47 _cell.length_b 49.3 _cell.length_c 49.74 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 451C _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B CAB HEM . A HEM 0 1_555 A SG CYS 12 A CYS 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.818 ? covale ? covale2 B CAC HEM . A HEM 0 1_555 A SG CYS 15 A CYS 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.821 ? metalc ? metalc1 B FE HEM . A HEM 0 1_555 A NE2 HIS 16 A HIS 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.973 ? metalc ? metalc2 B FE HEM . A HEM 0 1_555 A SD MET 61 A MET 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 451C _atom_sites.fract_transf_matrix[1][1] 0.033933 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020284 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020105 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 0 0 HEM HEM . C 3 HOH A 1 83 1 HOH HOH . C 3 HOH A 2 84 2 HOH HOH . C 3 HOH A 3 85 3 HOH HOH . C 3 HOH A 4 86 4 HOH HOH . C 3 HOH A 5 87 5 HOH HOH . C 3 HOH A 6 88 6 HOH HOH . C 3 HOH A 7 89 7 HOH HOH . C 3 HOH A 8 90 8 HOH HOH . C 3 HOH A 9 91 9 HOH HOH . C 3 HOH A 10 92 10 HOH HOH . C 3 HOH A 11 93 11 HOH HOH . C 3 HOH A 12 94 12 HOH HOH . C 3 HOH A 13 95 13 HOH HOH . C 3 HOH A 14 96 14 HOH HOH . C 3 HOH A 15 97 15 HOH HOH . C 3 HOH A 16 98 16 HOH HOH . C 3 HOH A 17 99 17 HOH HOH . C 3 HOH A 18 100 18 HOH HOH . C 3 HOH A 19 101 19 HOH HOH . C 3 HOH A 20 102 20 HOH HOH . C 3 HOH A 21 103 21 HOH HOH . C 3 HOH A 22 104 22 HOH HOH . C 3 HOH A 23 105 23 HOH HOH . C 3 HOH A 24 106 24 HOH HOH . C 3 HOH A 25 107 25 HOH HOH . C 3 HOH A 26 108 26 HOH HOH . C 3 HOH A 27 109 27 HOH HOH . C 3 HOH A 28 110 28 HOH HOH . C 3 HOH A 29 111 29 HOH HOH . C 3 HOH A 30 112 30 HOH HOH . C 3 HOH A 31 113 31 HOH HOH . C 3 HOH A 32 114 32 HOH HOH . C 3 HOH A 33 115 33 HOH HOH . C 3 HOH A 34 116 34 HOH HOH . C 3 HOH A 35 117 35 HOH HOH . C 3 HOH A 36 118 36 HOH HOH . C 3 HOH A 37 119 37 HOH HOH . C 3 HOH A 38 120 38 HOH HOH . C 3 HOH A 39 121 39 HOH HOH . C 3 HOH A 40 122 40 HOH HOH . C 3 HOH A 41 123 41 HOH HOH . C 3 HOH A 42 124 42 HOH HOH . C 3 HOH A 43 125 43 HOH HOH . C 3 HOH A 44 126 44 HOH HOH . C 3 HOH A 45 127 45 HOH HOH . C 3 HOH A 46 128 46 HOH HOH . C 3 HOH A 47 129 47 HOH HOH . C 3 HOH A 48 130 48 HOH HOH . C 3 HOH A 49 131 49 HOH HOH . C 3 HOH A 50 132 50 HOH HOH . C 3 HOH A 51 133 51 HOH HOH . C 3 HOH A 52 134 52 HOH HOH . C 3 HOH A 53 135 53 HOH HOH . C 3 HOH A 54 136 54 HOH HOH . C 3 HOH A 55 137 55 HOH HOH . C 3 HOH A 56 138 56 HOH HOH . C 3 HOH A 57 139 57 HOH HOH . C 3 HOH A 58 140 58 HOH HOH . C 3 HOH A 59 141 59 HOH HOH . C 3 HOH A 60 142 60 HOH HOH . C 3 HOH A 61 143 61 HOH HOH . C 3 HOH A 62 144 62 HOH HOH . C 3 HOH A 63 145 63 HOH HOH . C 3 HOH A 64 146 64 HOH HOH . C 3 HOH A 65 147 65 HOH HOH . C 3 HOH A 66 148 66 HOH HOH . C 3 HOH A 67 149 67 HOH HOH . C 3 HOH A 68 150 68 HOH HOH . C 3 HOH A 69 151 69 HOH HOH . C 3 HOH A 70 152 70 HOH HOH . C 3 HOH A 71 153 71 HOH HOH . C 3 HOH A 72 154 72 HOH HOH . C 3 HOH A 73 155 73 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 11.705 -15.239 17.133 1 5.52 ? CHA HEM 0 A 1 HETATM 2 C CHB HEM . . . B 2 7.601 -13.454 15.352 1 7.91 ? CHB HEM 0 A 1 HETATM 3 C CHC HEM . . . B 2 6.884 -11.032 19.466 1 6.02 ? CHC HEM 0 A 1 HETATM 4 C CHD HEM . . . B 2 11.276 -12.321 20.96 1 10.53 ? CHD HEM 0 A 1 HETATM 5 C C1A HEM . . . B 2 10.634 -14.991 16.299 1 6.23 ? C1A HEM 0 A 1 HETATM 6 C C2A HEM . . . B 2 10.451 -15.547 15.05 1 8.27 ? C2A HEM 0 A 1 HETATM 7 C C3A HEM . . . B 2 9.297 -14.993 14.516 1 7.07 ? C3A HEM 0 A 1 HETATM 8 C C4A HEM . . . B 2 8.779 -14.157 15.475 1 9.92 ? C4A HEM 0 A 1 HETATM 9 C CMA HEM . . . B 2 8.679 -15.258 13.158 1 7 ? CMA HEM 0 A 1 HETATM 10 C CAA HEM . . . B 2 11.329 -16.591 14.424 1 7.29 ? CAA HEM 0 A 1 HETATM 11 C CBA HEM . . . B 2 10.903 -17.937 14.962 1 11.15 ? CBA HEM 0 A 1 HETATM 12 C CGA HEM . . . B 2 11.76 -19.039 14.369 1 22.27 ? CGA HEM 0 A 1 HETATM 13 O O1A HEM . . . B 2 12.509 -18.781 13.431 1 18.65 ? O1A HEM 0 A 1 HETATM 14 O O2A HEM . . . B 2 11.265 -20.229 14.446 1 17.21 ? O2A HEM 0 A 1 HETATM 15 C C1B HEM . . . B 2 7.048 -12.619 16.3 1 10.91 ? C1B HEM 0 A 1 HETATM 16 C C2B HEM . . . B 2 5.816 -11.979 16.18 1 5.88 ? C2B HEM 0 A 1 HETATM 17 C C3B HEM . . . B 2 5.558 -11.35 17.403 1 -0.05 ? C3B HEM 0 A 1 HETATM 18 C C4B HEM . . . B 2 6.695 -11.546 18.199 1 4.49 ? C4B HEM 0 A 1 HETATM 19 C CMB HEM . . . B 2 4.912 -12.026 14.967 1 4.31 ? CMB HEM 0 A 1 HETATM 20 C CAB HEM . . . B 2 4.299 -10.621 17.829 1 6.35 ? CAB HEM 0 A 1 HETATM 21 C CBB HEM . . . B 2 3.091 -11.541 17.981 1 6.48 ? CBB HEM 0 A 1 HETATM 22 C C1C HEM . . . B 2 8.016 -11.19 20.251 1 4.45 ? C1C HEM 0 A 1 HETATM 23 C C2C HEM . . . B 2 8.243 -10.559 21.468 1 5.77 ? C2C HEM 0 A 1 HETATM 24 C C3C HEM . . . B 2 9.57 -10.805 21.808 1 8.44 ? C3C HEM 0 A 1 HETATM 25 C C4C HEM . . . B 2 10.044 -11.718 20.897 1 11.13 ? C4C HEM 0 A 1 HETATM 26 C CMC HEM . . . B 2 7.266 -9.649 22.19 1 8.62 ? CMC HEM 0 A 1 HETATM 27 C CAC HEM . . . B 2 10.391 -10.166 22.92 1 3.39 ? CAC HEM 0 A 1 HETATM 28 C CBC HEM . . . B 2 9.85 -10.474 24.312 1 10.94 ? CBC HEM 0 A 1 HETATM 29 C C1D HEM . . . B 2 11.754 -13.25 20.069 1 5.02 ? C1D HEM 0 A 1 HETATM 30 C C2D HEM . . . B 2 12.959 -13.93 20.212 1 3.97 ? C2D HEM 0 A 1 HETATM 31 C C3D HEM . . . B 2 13.04 -14.833 19.16 1 5.11 ? C3D HEM 0 A 1 HETATM 32 C C4D HEM . . . B 2 11.929 -14.616 18.347 1 9.05 ? C4D HEM 0 A 1 HETATM 33 C CMD HEM . . . B 2 13.966 -13.748 21.33 1 5.28 ? CMD HEM 0 A 1 HETATM 34 C CAD HEM . . . B 2 14.127 -15.851 18.915 1 9.04 ? CAD HEM 0 A 1 HETATM 35 C CBD HEM . . . B 2 13.727 -17.251 19.352 1 6.36 ? CBD HEM 0 A 1 HETATM 36 C CGD HEM . . . B 2 14.825 -18.245 18.978 1 6.46 ? CGD HEM 0 A 1 HETATM 37 O O1D HEM . . . B 2 14.505 -19.418 18.767 1 8.25 ? O1D HEM 0 A 1 HETATM 38 O O2D HEM . . . B 2 16.095 -17.97 19.199 1 15.15 ? O2D HEM 0 A 1 HETATM 39 N NA HEM . . . B 2 9.61 -14.148 16.551 1 6.22 ? NA HEM 0 A 1 HETATM 40 N NB HEM . . . B 2 7.581 -12.332 17.521 1 4.54 ? NB HEM 0 A 1 HETATM 41 N NC HEM . . . B 2 9.124 -11.898 19.917 1 3.58 ? NC HEM 0 A 1 HETATM 42 N ND HEM . . . B 2 11.12 -13.676 18.928 1 4.28 ? ND HEM 0 A 1 HETATM 43 FE FE HEM . . . B 2 9.397 -12.981 18.23 1 6.41 ? FE HEM 0 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #