data_452D # _model_server_result.job_id fZieST9-aYpqi3Q5HoONGQ _model_server_result.datetime_utc '2024-10-18 15:29:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 452d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":3015}' # _entry.id 452D # _exptl.entry_id 452D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 308.378 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 9-AMINO-(N-(2-DIMETHYLAMINO)ETHYL)ACRIDINE-4-CARBOXAMIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 452D _cell.length_a 30.161 _cell.length_b 30.161 _cell.length_c 39.692 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 452D _symmetry.cell_setting hexagonal _symmetry.Int_Tables_number 172 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 64' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 30.161 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog WATSON-CRICK hydrog1 A N3 DC 1 A DC 1001 1_555 A N1 DG 6 A DG 1006 4_655 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N4 DC 1 A DC 1001 1_555 A O6 DG 6 A DG 1006 4_655 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O2 DC 1 A DC 1001 1_555 A N2 DG 6 A DG 1006 4_655 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N1 DG 2 A DG 1002 1_555 A N3 DC 5 A DC 1005 4_655 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N2 DG 2 A DG 1002 1_555 A O2 DC 5 A DC 1005 4_655 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A O6 DG 2 A DG 1002 1_555 A N4 DC 5 A DC 1005 4_655 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N3 DT 3 A DT 1003 1_555 A N1 DA 4 A DA 1004 4_655 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A O4 DT 3 A DT 1003 1_555 A N6 DA 4 A DA 1004 4_655 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N1 DA 4 A DA 1004 1_555 A N3 DT 3 A DT 1003 4_655 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N6 DA 4 A DA 1004 1_555 A O4 DT 3 A DT 1003 4_655 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N3 DC 5 A DC 1005 1_555 A N1 DG 2 A DG 1002 4_655 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A N4 DC 5 A DC 1005 1_555 A O6 DG 2 A DG 1002 4_655 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A O2 DC 5 A DC 1005 1_555 A N2 DG 2 A DG 1002 4_655 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N1 DG 6 A DG 1006 1_555 A N3 DC 1 A DC 1001 4_655 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N2 DG 6 A DG 1006 1_555 A O2 DC 1 A DC 1001 4_655 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A O6 DG 6 A DG 1006 1_555 A N4 DC 1 A DC 1001 4_655 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C18 H20 N4 O' _chem_comp.formula_weight 308.378 _chem_comp.id 9AD _chem_comp.mon_nstd_flag . _chem_comp.name 9-AMINO-(N-(2-DIMETHYLAMINO)ETHYL)ACRIDINE-4-CARBOXAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 9AD doub 1 n y C1 C11 9AD sing 2 n y C1 H1 9AD sing 3 n n C2 C3 9AD sing 4 n y C2 H2 9AD sing 5 n n C3 C4 9AD doub 6 n y C3 H3 9AD sing 7 n n C4 C12 9AD sing 8 n y C4 CD1 9AD sing 9 n n C5 C6 9AD doub 10 n y C5 C14 9AD sing 11 n y C5 H5 9AD sing 12 n n C6 C7 9AD sing 13 n y C6 H6 9AD sing 14 n n C7 C8 9AD doub 15 n y C7 H7 9AD sing 16 n n C8 C13 9AD sing 17 n y C8 H8 9AD sing 18 n n C9 C11 9AD doub 19 n y C9 C13 9AD sing 20 n y C9 N9 9AD sing 21 n n N10 C12 9AD doub 22 n y N10 C14 9AD sing 23 n y C11 C12 9AD sing 24 n y C13 C14 9AD doub 25 n y N9 H9A 9AD sing 26 n n N9 H9B 9AD sing 27 n n CD1 OD1 9AD doub 28 n n CD1 ND1 9AD sing 29 n n ND1 CD2 9AD sing 30 n n ND1 HD1 9AD sing 31 n n ND2 CD3 9AD sing 32 n n ND2 CD7 9AD sing 33 n n ND2 CD8 9AD sing 34 n n CD2 CD3 9AD sing 35 n n CD2 HD21 9AD sing 36 n n CD2 HD22 9AD sing 37 n n CD3 HD31 9AD sing 38 n n CD3 HD32 9AD sing 39 n n CD7 HD71 9AD sing 40 n n CD7 HD72 9AD sing 41 n n CD7 HD73 9AD sing 42 n n CD8 HD81 9AD sing 43 n n CD8 HD82 9AD sing 44 n n CD8 HD83 9AD sing 45 n n # _atom_sites.entry_id 452D _atom_sites.fract_transf_matrix[1][1] 0.033155 _atom_sites.fract_transf_matrix[1][2] 0.019142 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.038285 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025194 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 9AD A 1 3013 3013 9AD 9AD . C 2 9AD A 1 3015 3015 9AD 9AD . D 3 MPD A 1 3016 3016 MPD MPD . E 4 HOH A 1 4001 4001 HOH HOH . E 4 HOH A 2 4002 4002 HOH HOH . E 4 HOH A 3 4003 4003 HOH HOH . E 4 HOH A 4 4004 4004 HOH HOH . E 4 HOH A 5 4005 4005 HOH HOH . E 4 HOH A 6 4006 4006 HOH HOH . E 4 HOH A 7 4007 4007 HOH HOH . E 4 HOH A 8 4008 4008 HOH HOH . E 4 HOH A 9 4009 4009 HOH HOH . E 4 HOH A 10 4010 4010 HOH HOH . E 4 HOH A 11 4011 4011 HOH HOH . E 4 HOH A 12 4012 4012 HOH HOH . E 4 HOH A 13 4013 4013 HOH HOH . E 4 HOH A 14 4014 4014 HOH HOH . E 4 HOH A 15 4015 4015 HOH HOH . E 4 HOH A 16 4016 4016 HOH HOH . E 4 HOH A 17 4017 4017 HOH HOH . E 4 HOH A 18 4018 4018 HOH HOH . E 4 HOH A 19 4019 4019 HOH HOH . E 4 HOH A 20 4020 4020 HOH HOH . E 4 HOH A 21 4021 4021 HOH HOH . E 4 HOH A 22 4022 4022 HOH HOH . E 4 HOH A 23 4023 4023 HOH HOH . E 4 HOH A 24 4024 4024 HOH HOH . E 4 HOH A 25 4025 4025 HOH HOH . E 4 HOH A 26 4026 4026 HOH HOH . E 4 HOH A 27 4027 4027 HOH HOH . E 4 HOH A 28 4028 4028 HOH HOH . E 4 HOH A 29 4029 4029 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 9AD . . . C 2 8.484 -13.636 17.257 0.5 18.73 ? C1 9AD 3015 A 1 HETATM 2 C C2 9AD . . . C 2 7.794 -13.309 16.163 0.5 11.74 ? C2 9AD 3015 A 1 HETATM 3 C C3 9AD . . . C 2 6.534 -12.654 16.239 0.5 7.85 ? C3 9AD 3015 A 1 HETATM 4 C C4 9AD . . . C 2 6.058 -12.382 17.457 0.5 7.65 ? C4 9AD 3015 A 1 HETATM 5 C C5 9AD . . . C 2 6.158 -12.319 22.214 0.5 8.36 ? C5 9AD 3015 A 1 HETATM 6 C C6 9AD . . . C 2 6.652 -12.545 23.447 0.5 13.17 ? C6 9AD 3015 A 1 HETATM 7 C C7 9AD . . . C 2 7.948 -13.21 23.548 0.5 9.94 ? C7 9AD 3015 A 1 HETATM 8 C C8 9AD . . . C 2 8.526 -13.538 22.364 0.5 10.01 ? C8 9AD 3015 A 1 HETATM 9 C C9 9AD . . . C 2 8.622 -13.646 19.83 0.5 14.48 ? C9 9AD 3015 A 1 HETATM 10 N N10 9AD . . . C 2 6.19 -12.394 19.815 0.5 17.97 ? N10 9AD 3015 A 1 HETATM 11 C C11 9AD . . . C 2 8.017 -13.367 18.578 0.5 11.34 ? C11 9AD 3015 A 1 HETATM 12 C C12 9AD . . . C 2 6.761 -12.714 18.641 0.5 11.76 ? C12 9AD 3015 A 1 HETATM 13 C C13 9AD . . . C 2 8.013 -13.305 21.071 0.5 11.81 ? C13 9AD 3015 A 1 HETATM 14 C C14 9AD . . . C 2 6.747 -12.649 21.024 0.5 6.38 ? C14 9AD 3015 A 1 HETATM 15 N N9 9AD . . . C 2 9.85 -14.281 19.862 0.5 18.57 ? N9 9AD 3015 A 1 HETATM 16 C CD1 9AD . . . C 2 4.808 -11.73 17.673 0.5 14.1 ? CD1 9AD 3015 A 1 HETATM 17 O OD1 9AD . . . C 2 4.407 -11.441 18.871 0.5 18.98 ? OD1 9AD 3015 A 1 HETATM 18 N ND1 9AD . . . C 2 4.014 -11.435 16.699 0.5 22.61 ? ND1 9AD 3015 A 1 HETATM 19 N ND2 9AD . . . C 2 4.391 -7.95 15.802 0.5 21.14 ? ND2 9AD 3015 A 1 HETATM 20 C CD2 9AD . . . C 2 3.413 -10.17 16.47 0.5 25.94 ? CD2 9AD 3015 A 1 HETATM 21 C CD3 9AD . . . C 2 4.124 -8.968 16.779 0.5 26.14 ? CD3 9AD 3015 A 1 HETATM 22 C CD7 9AD . . . C 2 3.347 -7.93 14.737 0.5 20.05 ? CD7 9AD 3015 A 1 HETATM 23 C CD8 9AD . . . C 2 4.411 -6.649 16.502 0.5 25.28 ? CD8 9AD 3015 A 1 HETATM 24 H H1 9AD . . . C 2 9.306 -14.058 17.153 0.5 22.48 ? H1 9AD 3015 A 1 HETATM 25 H H2 9AD . . . C 2 8.147 -13.514 15.327 0.5 14.09 ? H2 9AD 3015 A 1 HETATM 26 H H3 9AD . . . C 2 6.06 -12.425 15.472 0.5 9.42 ? H3 9AD 3015 A 1 HETATM 27 H H5 9AD . . . C 2 5.332 -11.895 22.166 0.5 10.03 ? H5 9AD 3015 A 1 HETATM 28 H H6 9AD . . . C 2 6.184 -12.286 24.208 0.5 15.8 ? H6 9AD 3015 A 1 HETATM 29 H H7 9AD . . . C 2 8.35 -13.397 24.365 0.5 11.93 ? H7 9AD 3015 A 1 HETATM 30 H H8 9AD . . . C 2 9.352 -13.963 22.41 0.5 12.01 ? H8 9AD 3015 A 1 HETATM 31 H H9A 9AD . . . C 2 10.239 -14.502 19.127 0.5 22.28 ? H9A 9AD 3015 A 1 HETATM 32 H H9B 9AD . . . C 2 10.225 -14.455 20.616 0.5 22.28 ? H9B 9AD 3015 A 1 HETATM 33 H HD21 9AD . . . C 2 2.583 -10.151 16.971 0.5 31.13 ? HD21 9AD 3015 A 1 HETATM 34 H HD22 9AD . . . C 2 3.175 -10.131 15.53 0.5 31.13 ? HD22 9AD 3015 A 1 HETATM 35 H HD31 9AD . . . C 2 4.983 -9.238 17.14 0.5 31.37 ? HD31 9AD 3015 A 1 HETATM 36 H HD32 9AD . . . C 2 3.643 -8.538 17.503 0.5 31.37 ? HD32 9AD 3015 A 1 HETATM 37 H HD71 9AD . . . C 2 3.226 -8.817 14.39 0.5 30.08 ? HD71 9AD 3015 A 1 HETATM 38 H HD72 9AD . . . C 2 3.623 -7.344 14.028 0.5 30.08 ? HD72 9AD 3015 A 1 HETATM 39 H HD73 9AD . . . C 2 2.518 -7.616 15.107 0.5 30.08 ? HD73 9AD 3015 A 1 HETATM 40 H HD81 9AD . . . C 2 4.758 -5.975 15.913 0.5 37.92 ? HD81 9AD 3015 A 1 HETATM 41 H HD82 9AD . . . C 2 4.969 -6.713 17.28 0.5 37.92 ? HD82 9AD 3015 A 1 HETATM 42 H HD83 9AD . . . C 2 3.518 -6.414 16.766 0.5 37.92 ? HD83 9AD 3015 A 1 HETATM 43 H H10 9AD . . . C 2 5.424 -12.003 19.799 0.5 21.56 ? H10 9AD 3015 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 43 #