data_456C # _model_server_result.job_id 4xiVpVVGGqjx0wUP2xGVYQ _model_server_result.datetime_utc '2024-10-18 04:19:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 456c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":273}' # _entry.id 456C # _exptl.entry_id 456C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 131.19 _cell.angle_gamma 90 _cell.entry_id 456C _cell.length_a 134.004 _cell.length_b 35.622 _cell.length_c 94.875 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 456C _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 F O4 CBP . A CBP 1 1_555 C ZN ZN . A ZN 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.894 ? metalc ? metalc2 F O1 CBP . A CBP 1 1_555 C ZN ZN . A ZN 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.958 ? metalc ? metalc3 F N2 CBP . A CBP 1 1_555 C ZN ZN . A ZN 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.737 ? metalc ? metalc4 A NE2 HIS 69 A HIS 172 1_555 D ZN ZN . A ZN 273 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.762 ? metalc ? metalc5 A OD2 ASP 71 A ASP 174 1_555 D ZN ZN . A ZN 273 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.688 ? metalc ? metalc6 A OD1 ASP 76 A ASP 179 1_555 E CA CA . A CA 274 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.946 ? metalc ? metalc7 A O GLY 77 A GLY 180 1_555 E CA CA . A CA 274 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.917 ? metalc ? metalc8 A O SER 79 A SER 182 1_555 E CA CA . A CA 274 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc9 A O LEU 81 A LEU 184 1_555 E CA CA . A CA 274 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.664 ? metalc ? metalc10 A NE2 HIS 84 A HIS 187 1_555 D ZN ZN . A ZN 273 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? metalc ? metalc11 A ND1 HIS 97 A HIS 200 1_555 D ZN ZN . A ZN 273 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.801 ? metalc ? metalc12 A OD2 ASP 99 A ASP 202 1_555 E CA CA . A CA 274 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.536 ? metalc ? metalc13 A OE2 GLU 102 A GLU 205 1_555 E CA CA . A CA 274 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.925 ? metalc ? metalc14 A NE2 HIS 119 A HIS 222 1_555 C ZN ZN . A ZN 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.945 ? metalc ? metalc15 A NE2 HIS 123 A HIS 226 1_555 C ZN ZN . A ZN 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc16 A NE2 HIS 129 A HIS 232 1_555 C ZN ZN . A ZN 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? metalc ? metalc17 J O4 CBP . B CBP 1 1_555 G ZN ZN . B ZN 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.698 ? metalc ? metalc18 J O1 CBP . B CBP 1 1_555 G ZN ZN . B ZN 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.595 ? metalc ? metalc19 B NE2 HIS 69 B HIS 172 1_555 H ZN ZN . B ZN 273 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.831 ? metalc ? metalc20 B OD2 ASP 71 B ASP 174 1_555 H ZN ZN . B ZN 273 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.618 ? metalc ? metalc21 B OD1 ASP 76 B ASP 179 1_555 I CA CA . B CA 274 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? metalc ? metalc22 B O GLY 77 B GLY 180 1_555 I CA CA . B CA 274 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.781 ? metalc ? metalc23 B O SER 79 B SER 182 1_555 I CA CA . B CA 274 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc24 B O LEU 81 B LEU 184 1_555 I CA CA . B CA 274 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? metalc ? metalc25 B NE2 HIS 84 B HIS 187 1_555 H ZN ZN . B ZN 273 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.829 ? metalc ? metalc26 B ND1 HIS 97 B HIS 200 1_555 H ZN ZN . B ZN 273 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.845 ? metalc ? metalc27 B OD2 ASP 99 B ASP 202 1_555 I CA CA . B CA 274 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? metalc ? metalc28 B OE2 GLU 102 B GLU 205 1_555 I CA CA . B CA 274 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.805 ? metalc ? metalc29 B NE2 HIS 119 B HIS 222 1_555 G ZN ZN . B ZN 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.76 ? metalc ? metalc30 B NE2 HIS 123 B HIS 226 1_555 G ZN ZN . B ZN 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc31 B NE2 HIS 129 B HIS 232 1_555 G ZN ZN . B ZN 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 456C _atom_sites.fract_transf_matrix[1][1] 0.007462 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006531 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.028073 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014006 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 272 261 ZN ZN . D 2 ZN A 1 273 262 ZN ZN . E 3 CA A 1 274 264 CA CA . F 4 CBP A 1 1 1 CBP 345 . G 2 ZN B 1 272 261 ZN ZN . H 2 ZN B 1 273 262 ZN ZN . I 3 CA B 1 274 263 CA CA . J 4 CBP B 1 1 1 CBP 345 . K 5 HOH A 1 6 6 HOH HOH . K 5 HOH A 2 8 8 HOH HOH . K 5 HOH A 3 10 10 HOH HOH . K 5 HOH A 4 11 11 HOH HOH . K 5 HOH A 5 14 14 HOH HOH . K 5 HOH A 6 17 17 HOH HOH . K 5 HOH A 7 18 18 HOH HOH . K 5 HOH A 8 21 21 HOH HOH . K 5 HOH A 9 23 23 HOH HOH . K 5 HOH A 10 25 25 HOH HOH . K 5 HOH A 11 26 26 HOH HOH . K 5 HOH A 12 29 29 HOH HOH . K 5 HOH A 13 30 30 HOH HOH . K 5 HOH A 14 31 31 HOH HOH . K 5 HOH A 15 32 32 HOH HOH . K 5 HOH A 16 34 34 HOH HOH . K 5 HOH A 17 36 36 HOH HOH . K 5 HOH A 18 40 40 HOH HOH . K 5 HOH A 19 41 41 HOH HOH . K 5 HOH A 20 42 42 HOH HOH . K 5 HOH A 21 44 44 HOH HOH . K 5 HOH A 22 45 45 HOH HOH . K 5 HOH A 23 46 46 HOH HOH . K 5 HOH A 24 47 47 HOH HOH . K 5 HOH A 25 50 50 HOH HOH . K 5 HOH A 26 52 52 HOH HOH . K 5 HOH A 27 53 53 HOH HOH . K 5 HOH A 28 54 54 HOH HOH . K 5 HOH A 29 56 56 HOH HOH . K 5 HOH A 30 58 58 HOH HOH . K 5 HOH A 31 59 59 HOH HOH . K 5 HOH A 32 61 61 HOH HOH . K 5 HOH A 33 65 65 HOH HOH . K 5 HOH A 34 66 66 HOH HOH . K 5 HOH A 35 68 68 HOH HOH . K 5 HOH A 36 72 72 HOH HOH . K 5 HOH A 37 77 77 HOH HOH . K 5 HOH A 38 78 78 HOH HOH . K 5 HOH A 39 80 80 HOH HOH . K 5 HOH A 40 83 83 HOH HOH . K 5 HOH A 41 84 84 HOH HOH . K 5 HOH A 42 85 85 HOH HOH . K 5 HOH A 43 86 86 HOH HOH . K 5 HOH A 44 87 87 HOH HOH . K 5 HOH A 45 89 89 HOH HOH . K 5 HOH A 46 90 90 HOH HOH . K 5 HOH A 47 93 93 HOH HOH . K 5 HOH A 48 94 94 HOH HOH . K 5 HOH A 49 97 97 HOH HOH . K 5 HOH A 50 99 99 HOH HOH . K 5 HOH A 51 101 101 HOH HOH . K 5 HOH A 52 102 102 HOH HOH . L 5 HOH B 1 275 1 HOH HOH . L 5 HOH B 2 276 2 HOH HOH . L 5 HOH B 3 277 3 HOH HOH . L 5 HOH B 4 278 4 HOH HOH . L 5 HOH B 5 279 5 HOH HOH . L 5 HOH B 6 280 7 HOH HOH . L 5 HOH B 7 281 9 HOH HOH . L 5 HOH B 8 282 12 HOH HOH . L 5 HOH B 9 283 13 HOH HOH . L 5 HOH B 10 284 15 HOH HOH . L 5 HOH B 11 285 16 HOH HOH . L 5 HOH B 12 286 19 HOH HOH . L 5 HOH B 13 287 20 HOH HOH . L 5 HOH B 14 288 22 HOH HOH . L 5 HOH B 15 289 24 HOH HOH . L 5 HOH B 16 290 27 HOH HOH . L 5 HOH B 17 291 28 HOH HOH . L 5 HOH B 18 292 33 HOH HOH . L 5 HOH B 19 293 35 HOH HOH . L 5 HOH B 20 294 37 HOH HOH . L 5 HOH B 21 295 38 HOH HOH . L 5 HOH B 22 296 39 HOH HOH . L 5 HOH B 23 297 43 HOH HOH . L 5 HOH B 24 298 48 HOH HOH . L 5 HOH B 25 299 49 HOH HOH . L 5 HOH B 26 300 51 HOH HOH . L 5 HOH B 27 301 55 HOH HOH . L 5 HOH B 28 302 57 HOH HOH . L 5 HOH B 29 303 60 HOH HOH . L 5 HOH B 30 304 62 HOH HOH . L 5 HOH B 31 305 63 HOH HOH . L 5 HOH B 32 306 64 HOH HOH . L 5 HOH B 33 307 67 HOH HOH . L 5 HOH B 34 308 69 HOH HOH . L 5 HOH B 35 309 70 HOH HOH . L 5 HOH B 36 310 71 HOH HOH . L 5 HOH B 37 311 73 HOH HOH . L 5 HOH B 38 312 74 HOH HOH . L 5 HOH B 39 313 75 HOH HOH . L 5 HOH B 40 314 76 HOH HOH . L 5 HOH B 41 315 79 HOH HOH . L 5 HOH B 42 316 81 HOH HOH . L 5 HOH B 43 317 82 HOH HOH . L 5 HOH B 44 318 88 HOH HOH . L 5 HOH B 45 319 91 HOH HOH . L 5 HOH B 46 320 92 HOH HOH . L 5 HOH B 47 321 95 HOH HOH . L 5 HOH B 48 322 96 HOH HOH . L 5 HOH B 49 323 98 HOH HOH . L 5 HOH B 50 324 100 HOH HOH . L 5 HOH B 51 325 103 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x -1.832 _atom_site.Cartn_y 19.059 _atom_site.Cartn_z 63.534 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 14.65 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 273 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #