data_4A00 # _model_server_result.job_id u_IHag5Lp4jr9ELH3YpVPQ _model_server_result.datetime_utc '2024-11-01 00:50:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4a00 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1397}' # _entry.id 4A00 # _exptl.entry_id 4A00 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 320.236 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ALANYL-PYRIDOXAL-5'-PHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4A00 _cell.length_a 85.149 _cell.length_b 153.999 _cell.length_c 80.188 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4A00 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_655 -x+1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 85.149 0 40.094 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C11 H17 N2 O7 P' _chem_comp.formula_weight 320.236 _chem_comp.id PP3 _chem_comp.mon_nstd_flag . _chem_comp.name "ALANYL-PYRIDOXAL-5'-PHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'PYRIDOXYL-ALANINE-5-PHOSPHATE;VITAMIN B6 COMPLEXED WITH ALANINE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 PP3 doub 289 n y N1 C6 PP3 sing 290 n y C2 C2A PP3 sing 291 n n C2 C3 PP3 sing 292 n y C2A H2A1 PP3 sing 293 n n C2A H2A2 PP3 sing 294 n n C2A H2A3 PP3 sing 295 n n C3 O3 PP3 sing 296 n n C3 C4 PP3 doub 297 n y O3 HO3 PP3 sing 298 n n C4 C4A PP3 sing 299 n n C4 C5 PP3 sing 300 n y C4A N PP3 sing 301 n n C4A H4A1 PP3 sing 302 n n C4A H4A2 PP3 sing 303 n n C5 C6 PP3 doub 304 n y C5 C5A PP3 sing 305 n n C6 H6 PP3 sing 306 n n C5A O4P PP3 sing 307 n n C5A H5A1 PP3 sing 308 n n C5A H5A2 PP3 sing 309 n n O4P P PP3 sing 310 n n P O1P PP3 doub 311 n n P O2P PP3 sing 312 n n P O3P PP3 sing 313 n n O2P HOP2 PP3 sing 314 n n O3P HOP3 PP3 sing 315 n n N CA PP3 sing 316 n n N HN2 PP3 sing 317 n n CA C PP3 sing 318 n n CA CB PP3 sing 319 n n CA HA PP3 sing 320 n n C O PP3 doub 321 n n C OXT PP3 sing 322 n n CB HB1 PP3 sing 323 n n CB HB2 PP3 sing 324 n n CB HB3 PP3 sing 325 n n OXT HXT PP3 sing 326 n n # _atom_sites.entry_id 4A00 _atom_sites.fract_transf_matrix[1][1] 0.011744 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006494 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012471 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PP3 A 1 1397 1397 PP3 PP3 . C 3 PEG A 1 1398 1398 PEG PEG . D 3 PEG A 1 1399 1399 PEG PEG . E 4 GOL A 1 1400 1400 GOL GOL . F 4 GOL A 1 1401 1401 GOL GOL . G 4 GOL A 1 1402 1402 GOL GOL . H 4 GOL A 1 1403 1403 GOL GOL . I 5 HOH A 1 2001 2001 HOH HOH . I 5 HOH A 2 2002 2002 HOH HOH . I 5 HOH A 3 2003 2003 HOH HOH . I 5 HOH A 4 2004 2004 HOH HOH . I 5 HOH A 5 2005 2005 HOH HOH . I 5 HOH A 6 2006 2006 HOH HOH . I 5 HOH A 7 2007 2007 HOH HOH . I 5 HOH A 8 2008 2008 HOH HOH . I 5 HOH A 9 2009 2009 HOH HOH . I 5 HOH A 10 2010 2010 HOH HOH . I 5 HOH A 11 2011 2011 HOH HOH . I 5 HOH A 12 2012 2012 HOH HOH . I 5 HOH A 13 2013 2013 HOH HOH . I 5 HOH A 14 2014 2014 HOH HOH . I 5 HOH A 15 2015 2015 HOH HOH . I 5 HOH A 16 2016 2016 HOH HOH . I 5 HOH A 17 2017 2017 HOH HOH . I 5 HOH A 18 2018 2018 HOH HOH . I 5 HOH A 19 2019 2019 HOH HOH . I 5 HOH A 20 2020 2020 HOH HOH . I 5 HOH A 21 2021 2021 HOH HOH . I 5 HOH A 22 2022 2022 HOH HOH . I 5 HOH A 23 2023 2023 HOH HOH . I 5 HOH A 24 2024 2024 HOH HOH . I 5 HOH A 25 2025 2025 HOH HOH . I 5 HOH A 26 2026 2026 HOH HOH . I 5 HOH A 27 2027 2027 HOH HOH . I 5 HOH A 28 2028 2028 HOH HOH . I 5 HOH A 29 2029 2029 HOH HOH . I 5 HOH A 30 2030 2030 HOH HOH . I 5 HOH A 31 2031 2031 HOH HOH . I 5 HOH A 32 2032 2032 HOH HOH . I 5 HOH A 33 2033 2033 HOH HOH . I 5 HOH A 34 2034 2034 HOH HOH . I 5 HOH A 35 2035 2035 HOH HOH . I 5 HOH A 36 2036 2036 HOH HOH . I 5 HOH A 37 2037 2037 HOH HOH . I 5 HOH A 38 2038 2038 HOH HOH . I 5 HOH A 39 2039 2039 HOH HOH . I 5 HOH A 40 2040 2040 HOH HOH . I 5 HOH A 41 2041 2041 HOH HOH . I 5 HOH A 42 2042 2042 HOH HOH . I 5 HOH A 43 2043 2043 HOH HOH . I 5 HOH A 44 2044 2044 HOH HOH . I 5 HOH A 45 2045 2045 HOH HOH . I 5 HOH A 46 2046 2046 HOH HOH . I 5 HOH A 47 2047 2047 HOH HOH . I 5 HOH A 48 2048 2048 HOH HOH . I 5 HOH A 49 2049 2049 HOH HOH . I 5 HOH A 50 2050 2050 HOH HOH . I 5 HOH A 51 2051 2051 HOH HOH . I 5 HOH A 52 2052 2052 HOH HOH . I 5 HOH A 53 2053 2053 HOH HOH . I 5 HOH A 54 2054 2054 HOH HOH . I 5 HOH A 55 2055 2055 HOH HOH . I 5 HOH A 56 2056 2056 HOH HOH . I 5 HOH A 57 2057 2057 HOH HOH . I 5 HOH A 58 2058 2058 HOH HOH . I 5 HOH A 59 2059 2059 HOH HOH . I 5 HOH A 60 2060 2060 HOH HOH . I 5 HOH A 61 2061 2061 HOH HOH . I 5 HOH A 62 2062 2062 HOH HOH . I 5 HOH A 63 2063 2063 HOH HOH . I 5 HOH A 64 2064 2064 HOH HOH . I 5 HOH A 65 2065 2065 HOH HOH . I 5 HOH A 66 2066 2066 HOH HOH . I 5 HOH A 67 2067 2067 HOH HOH . I 5 HOH A 68 2068 2068 HOH HOH . I 5 HOH A 69 2069 2069 HOH HOH . I 5 HOH A 70 2070 2070 HOH HOH . I 5 HOH A 71 2071 2071 HOH HOH . I 5 HOH A 72 2072 2072 HOH HOH . I 5 HOH A 73 2073 2073 HOH HOH . I 5 HOH A 74 2074 2074 HOH HOH . I 5 HOH A 75 2075 2075 HOH HOH . I 5 HOH A 76 2076 2076 HOH HOH . I 5 HOH A 77 2077 2077 HOH HOH . I 5 HOH A 78 2078 2078 HOH HOH . I 5 HOH A 79 2079 2079 HOH HOH . I 5 HOH A 80 2080 2080 HOH HOH . I 5 HOH A 81 2081 2081 HOH HOH . I 5 HOH A 82 2082 2082 HOH HOH . I 5 HOH A 83 2083 2083 HOH HOH . I 5 HOH A 84 2084 2084 HOH HOH . I 5 HOH A 85 2085 2085 HOH HOH . I 5 HOH A 86 2086 2086 HOH HOH . I 5 HOH A 87 2087 2087 HOH HOH . I 5 HOH A 88 2088 2088 HOH HOH . I 5 HOH A 89 2089 2089 HOH HOH . I 5 HOH A 90 2090 2090 HOH HOH . I 5 HOH A 91 2091 2091 HOH HOH . I 5 HOH A 92 2092 2092 HOH HOH . I 5 HOH A 93 2093 2093 HOH HOH . I 5 HOH A 94 2094 2094 HOH HOH . I 5 HOH A 95 2095 2095 HOH HOH . I 5 HOH A 96 2096 2096 HOH HOH . I 5 HOH A 97 2097 2097 HOH HOH . I 5 HOH A 98 2098 2098 HOH HOH . I 5 HOH A 99 2099 2099 HOH HOH . I 5 HOH A 100 2100 2100 HOH HOH . I 5 HOH A 101 2101 2101 HOH HOH . I 5 HOH A 102 2102 2102 HOH HOH . I 5 HOH A 103 2103 2103 HOH HOH . I 5 HOH A 104 2104 2104 HOH HOH . I 5 HOH A 105 2105 2105 HOH HOH . I 5 HOH A 106 2106 2106 HOH HOH . I 5 HOH A 107 2107 2107 HOH HOH . I 5 HOH A 108 2108 2108 HOH HOH . I 5 HOH A 109 2109 2109 HOH HOH . I 5 HOH A 110 2110 2110 HOH HOH . I 5 HOH A 111 2111 2111 HOH HOH . I 5 HOH A 112 2112 2112 HOH HOH . I 5 HOH A 113 2113 2113 HOH HOH . I 5 HOH A 114 2114 2114 HOH HOH . I 5 HOH A 115 2115 2115 HOH HOH . I 5 HOH A 116 2116 2116 HOH HOH . I 5 HOH A 117 2117 2117 HOH HOH . I 5 HOH A 118 2118 2118 HOH HOH . I 5 HOH A 119 2119 2119 HOH HOH . I 5 HOH A 120 2120 2120 HOH HOH . I 5 HOH A 121 2121 2121 HOH HOH . I 5 HOH A 122 2122 2122 HOH HOH . I 5 HOH A 123 2123 2123 HOH HOH . I 5 HOH A 124 2124 2124 HOH HOH . I 5 HOH A 125 2125 2125 HOH HOH . I 5 HOH A 126 2126 2126 HOH HOH . I 5 HOH A 127 2127 2127 HOH HOH . I 5 HOH A 128 2128 2128 HOH HOH . I 5 HOH A 129 2129 2129 HOH HOH . I 5 HOH A 130 2130 2130 HOH HOH . I 5 HOH A 131 2131 2131 HOH HOH . I 5 HOH A 132 2132 2132 HOH HOH . I 5 HOH A 133 2133 2133 HOH HOH . I 5 HOH A 134 2134 2134 HOH HOH . I 5 HOH A 135 2135 2135 HOH HOH . I 5 HOH A 136 2136 2136 HOH HOH . I 5 HOH A 137 2137 2137 HOH HOH . I 5 HOH A 138 2138 2138 HOH HOH . I 5 HOH A 139 2139 2139 HOH HOH . I 5 HOH A 140 2140 2140 HOH HOH . I 5 HOH A 141 2141 2141 HOH HOH . I 5 HOH A 142 2142 2142 HOH HOH . I 5 HOH A 143 2143 2143 HOH HOH . I 5 HOH A 144 2144 2144 HOH HOH . I 5 HOH A 145 2145 2145 HOH HOH . I 5 HOH A 146 2146 2146 HOH HOH . I 5 HOH A 147 2147 2147 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 PP3 . . . B 2 37.578 50.852 34.637 1 39.7 ? N1 PP3 1397 A 1 HETATM 2 C C2 PP3 . . . B 2 36.661 51.248 35.536 1 40.98 ? C2 PP3 1397 A 1 HETATM 3 C C2A PP3 . . . B 2 36.619 50.59 36.875 1 38.48 ? C2A PP3 1397 A 1 HETATM 4 C C3 PP3 . . . B 2 35.745 52.281 35.21 1 42.68 ? C3 PP3 1397 A 1 HETATM 5 O O3 PP3 . . . B 2 34.801 52.69 36.13 1 45.04 ? O3 PP3 1397 A 1 HETATM 6 C C4 PP3 . . . B 2 35.776 52.904 33.944 1 44.15 ? C4 PP3 1397 A 1 HETATM 7 C C4A PP3 . . . B 2 34.764 53.991 33.674 1 45.81 ? C4A PP3 1397 A 1 HETATM 8 C C5 PP3 . . . B 2 36.75 52.495 33.009 1 41.37 ? C5 PP3 1397 A 1 HETATM 9 C C6 PP3 . . . B 2 37.63 51.485 33.35 1 40.87 ? C6 PP3 1397 A 1 HETATM 10 C C5A PP3 . . . B 2 36.872 53.068 31.616 1 38.92 ? C5A PP3 1397 A 1 HETATM 11 O O4P PP3 . . . B 2 37.66 54.17 31.4 1 32.02 ? O4P PP3 1397 A 1 HETATM 12 P P PP3 . . . B 2 38.031 54.655 30.005 1 24.96 ? P PP3 1397 A 1 HETATM 13 O O1P PP3 . . . B 2 36.962 55.633 29.503 1 27.47 ? O1P PP3 1397 A 1 HETATM 14 O O2P PP3 . . . B 2 38.324 53.561 28.98 1 29.35 ? O2P PP3 1397 A 1 HETATM 15 O O3P PP3 . . . B 2 39.308 55.357 30.227 1 28.99 ? O3P PP3 1397 A 1 HETATM 16 N N PP3 . . . B 2 33.421 53.853 34.215 1 46.56 ? N PP3 1397 A 1 HETATM 17 C CA PP3 . . . B 2 32.243 54.389 33.558 1 46.72 ? CA PP3 1397 A 1 HETATM 18 C C PP3 . . . B 2 31.091 53.422 33.515 1 46.86 ? C PP3 1397 A 1 HETATM 19 O O PP3 . . . B 2 30.325 53.352 34.457 1 46.84 ? O PP3 1397 A 1 HETATM 20 C CB PP3 . . . B 2 32.439 55.131 32.266 1 46.55 ? CB PP3 1397 A 1 HETATM 21 O OXT PP3 . . . B 2 30.715 52.789 32.351 1 47.25 ? OXT PP3 1397 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 21 #