data_4A06 # _model_server_result.job_id SiCXgdFZtnGiSnAr4KjVeQ _model_server_result.datetime_utc '2024-10-22 00:17:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4a06 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":600}' # _entry.id 4A06 # _exptl.entry_id 4A06 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 349.211 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(3S)-4-(5-chloro-1H-benzimidazol-2-yl)-3-(4-chlorophenyl)butanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.07 _cell.angle_gamma 90 _cell.entry_id 4A06 _cell.length_a 148.39 _cell.length_b 44.1 _cell.length_c 47.3 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4A06 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ASN 192 A ASN 240 1_555 A N SEP 193 A SEP 241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale2 A C SEP 193 A SEP 241 1_555 A N PHE 194 A PHE 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? # _chem_comp.formula 'C17 H14 Cl2 N2 O2' _chem_comp.formula_weight 349.211 _chem_comp.id A06 _chem_comp.mon_nstd_flag . _chem_comp.name '(3S)-4-(5-chloro-1H-benzimidazol-2-yl)-3-(4-chlorophenyl)butanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C6 A06 sing 1 n y C1 C2 A06 doub 2 n y C1 C14 A06 sing 3 n n C6 C5 A06 doub 4 n y C5 C4 A06 sing 5 n y C4 C3 A06 doub 6 n y C4 CL2 A06 sing 7 n n C3 C2 A06 sing 8 n y C8 C9 A06 sing 9 n y C8 C13 A06 doub 10 n y C8 N9 A06 sing 11 n y C9 C10 A06 doub 12 n y C10 C11 A06 sing 13 n y C11 C12 A06 doub 14 n y C11 CL1 A06 sing 15 n n C12 C13 A06 sing 16 n y C13 N14 A06 sing 17 n y N14 C15 A06 doub 18 n y C15 C16 A06 sing 19 n n C15 N9 A06 sing 20 n y C14 C16 A06 sing 21 n n C14 C17 A06 sing 22 n n C17 C18 A06 sing 23 n n C18 O1 A06 sing 24 n n C18 O2 A06 doub 25 n n C14 H14 A06 sing 26 n n C6 H6 A06 sing 27 n n C2 H2 A06 sing 28 n n C5 H5 A06 sing 29 n n C3 H3 A06 sing 30 n n C9 H9 A06 sing 31 n n N9 HA A06 sing 32 n n C10 H10 A06 sing 33 n n C12 H12 A06 sing 34 n n C16 H161 A06 sing 35 n n C16 H162 A06 sing 36 n n C17 H171 A06 sing 37 n n C17 H172 A06 sing 38 n n O1 HO1 A06 sing 39 n n # _atom_sites.entry_id 4A06 _atom_sites.fract_transf_matrix[1][1] 0.006739 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001197 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022676 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021472 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ATP A 1 500 500 ATP ATP . C 3 A06 A 1 600 600 A06 A06 . D 4 DMS A 1 700 700 DMS DMS . E 5 CL A 1 800 800 CL CL . F 5 CL A 1 810 810 CL CL . G 5 CL A 1 820 820 CL CL . H 5 CL A 1 830 830 CL CL . I 5 CL A 1 840 840 CL CL . J 5 CL A 1 850 850 CL CL . K 5 CL A 1 860 860 CL CL . L 5 CL A 1 870 870 CL CL . M 6 HOH A 1 2001 2001 HOH HOH . M 6 HOH A 2 2002 2002 HOH HOH . M 6 HOH A 3 2003 2003 HOH HOH . M 6 HOH A 4 2004 2004 HOH HOH . M 6 HOH A 5 2005 2005 HOH HOH . M 6 HOH A 6 2006 2006 HOH HOH . M 6 HOH A 7 2007 2007 HOH HOH . M 6 HOH A 8 2008 2008 HOH HOH . M 6 HOH A 9 2009 2009 HOH HOH . M 6 HOH A 10 2010 2010 HOH HOH . M 6 HOH A 11 2011 2011 HOH HOH . M 6 HOH A 12 2012 2012 HOH HOH . M 6 HOH A 13 2013 2013 HOH HOH . M 6 HOH A 14 2014 2014 HOH HOH . M 6 HOH A 15 2015 2015 HOH HOH . M 6 HOH A 16 2016 2016 HOH HOH . M 6 HOH A 17 2017 2017 HOH HOH . M 6 HOH A 18 2018 2018 HOH HOH . M 6 HOH A 19 2019 2019 HOH HOH . M 6 HOH A 20 2020 2020 HOH HOH . M 6 HOH A 21 2021 2021 HOH HOH . M 6 HOH A 22 2022 2022 HOH HOH . M 6 HOH A 23 2023 2023 HOH HOH . M 6 HOH A 24 2024 2024 HOH HOH . M 6 HOH A 25 2025 2025 HOH HOH . M 6 HOH A 26 2026 2026 HOH HOH . M 6 HOH A 27 2027 2027 HOH HOH . M 6 HOH A 28 2028 2028 HOH HOH . M 6 HOH A 29 2029 2029 HOH HOH . M 6 HOH A 30 2030 2030 HOH HOH . M 6 HOH A 31 2031 2031 HOH HOH . M 6 HOH A 32 2032 2032 HOH HOH . M 6 HOH A 33 2033 2033 HOH HOH . M 6 HOH A 34 2034 2034 HOH HOH . M 6 HOH A 35 2035 2035 HOH HOH . M 6 HOH A 36 2036 2036 HOH HOH . M 6 HOH A 37 2037 2037 HOH HOH . M 6 HOH A 38 2038 2038 HOH HOH . M 6 HOH A 39 2039 2039 HOH HOH . M 6 HOH A 40 2040 2040 HOH HOH . M 6 HOH A 41 2041 2041 HOH HOH . M 6 HOH A 42 2042 2042 HOH HOH . M 6 HOH A 43 2043 2043 HOH HOH . M 6 HOH A 44 2044 2044 HOH HOH . M 6 HOH A 45 2045 2045 HOH HOH . M 6 HOH A 46 2046 2046 HOH HOH . M 6 HOH A 47 2047 2047 HOH HOH . M 6 HOH A 48 2048 2048 HOH HOH . M 6 HOH A 49 2049 2049 HOH HOH . M 6 HOH A 50 2050 2050 HOH HOH . M 6 HOH A 51 2051 2051 HOH HOH . M 6 HOH A 52 2052 2052 HOH HOH . M 6 HOH A 53 2053 2053 HOH HOH . M 6 HOH A 54 2054 2054 HOH HOH . M 6 HOH A 55 2055 2055 HOH HOH . M 6 HOH A 56 2056 2056 HOH HOH . M 6 HOH A 57 2057 2057 HOH HOH . M 6 HOH A 58 2058 2058 HOH HOH . M 6 HOH A 59 2059 2059 HOH HOH . M 6 HOH A 60 2060 2060 HOH HOH . M 6 HOH A 61 2061 2061 HOH HOH . M 6 HOH A 62 2062 2062 HOH HOH . M 6 HOH A 63 2063 2063 HOH HOH . M 6 HOH A 64 2064 2064 HOH HOH . M 6 HOH A 65 2065 2065 HOH HOH . M 6 HOH A 66 2066 2066 HOH HOH . M 6 HOH A 67 2067 2067 HOH HOH . M 6 HOH A 68 2068 2068 HOH HOH . M 6 HOH A 69 2069 2069 HOH HOH . M 6 HOH A 70 2070 2070 HOH HOH . M 6 HOH A 71 2071 2071 HOH HOH . M 6 HOH A 72 2072 2072 HOH HOH . M 6 HOH A 73 2073 2073 HOH HOH . M 6 HOH A 74 2074 2074 HOH HOH . M 6 HOH A 75 2075 2075 HOH HOH . M 6 HOH A 76 2076 2076 HOH HOH . M 6 HOH A 77 2077 2077 HOH HOH . M 6 HOH A 78 2078 2078 HOH HOH . M 6 HOH A 79 2079 2079 HOH HOH . M 6 HOH A 80 2080 2080 HOH HOH . M 6 HOH A 81 2081 2081 HOH HOH . M 6 HOH A 82 2082 2082 HOH HOH . M 6 HOH A 83 2083 2083 HOH HOH . M 6 HOH A 84 2084 2084 HOH HOH . M 6 HOH A 85 2085 2085 HOH HOH . M 6 HOH A 86 2086 2086 HOH HOH . M 6 HOH A 87 2087 2087 HOH HOH . M 6 HOH A 88 2088 2088 HOH HOH . M 6 HOH A 89 2089 2089 HOH HOH . M 6 HOH A 90 2090 2090 HOH HOH . M 6 HOH A 91 2091 2091 HOH HOH . M 6 HOH A 92 2092 2092 HOH HOH . M 6 HOH A 93 2093 2093 HOH HOH . M 6 HOH A 94 2094 2094 HOH HOH . M 6 HOH A 95 2095 2095 HOH HOH . M 6 HOH A 96 2096 2096 HOH HOH . M 6 HOH A 97 2097 2097 HOH HOH . M 6 HOH A 98 2098 2098 HOH HOH . M 6 HOH A 99 2099 2099 HOH HOH . M 6 HOH A 100 2100 2100 HOH HOH . M 6 HOH A 101 2101 2101 HOH HOH . M 6 HOH A 102 2102 2102 HOH HOH . M 6 HOH A 103 2103 2103 HOH HOH . M 6 HOH A 104 2104 2104 HOH HOH . M 6 HOH A 105 2105 2105 HOH HOH . M 6 HOH A 106 2106 2106 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 A06 . . . C 3 13.84 -6.389 -14.535 1 58.26 ? C1 A06 600 A 1 HETATM 2 C C6 A06 . . . C 3 13.074 -7.034 -13.569 1 59.03 ? C6 A06 600 A 1 HETATM 3 C C5 A06 . . . C 3 13.323 -8.369 -13.268 1 59.81 ? C5 A06 600 A 1 HETATM 4 C C4 A06 . . . C 3 14.339 -9.049 -13.937 1 61.06 ? C4 A06 600 A 1 HETATM 5 C C3 A06 . . . C 3 15.102 -8.396 -14.901 1 58.43 ? C3 A06 600 A 1 HETATM 6 C C2 A06 . . . C 3 14.854 -7.065 -15.199 1 55.3 ? C2 A06 600 A 1 HETATM 7 C C8 A06 . . . C 3 16.328 -4.1 -11.848 1 59.46 ? C8 A06 600 A 1 HETATM 8 C C9 A06 . . . C 3 16.451 -3.86 -10.487 1 57.52 ? C9 A06 600 A 1 HETATM 9 C C10 A06 . . . C 3 17.67 -4.11 -9.864 1 54.71 ? C10 A06 600 A 1 HETATM 10 C C11 A06 . . . C 3 18.761 -4.595 -10.581 1 52.25 ? C11 A06 600 A 1 HETATM 11 C C12 A06 . . . C 3 18.685 -4.844 -11.946 1 54.36 ? C12 A06 600 A 1 HETATM 12 C C13 A06 . . . C 3 17.49 -4.608 -12.606 1 61.26 ? C13 A06 600 A 1 HETATM 13 N N14 A06 . . . C 3 17.077 -4.739 -13.883 1 66.96 ? N14 A06 600 A 1 HETATM 14 C C15 A06 . . . C 3 15.779 -4.349 -13.952 1 65.75 ? C15 A06 600 A 1 HETATM 15 C C14 A06 . . . C 3 13.596 -4.972 -14.869 1 62.97 ? C14 A06 600 A 1 HETATM 16 C C16 A06 . . . C 3 14.944 -4.351 -15.21 1 64.85 ? C16 A06 600 A 1 HETATM 17 CL CL1 A06 . . . C 3 20.304 -4.905 -9.73 1 80.02 ? CL1 A06 600 A 1 HETATM 18 N N9 A06 . . . C 3 15.333 -3.976 -12.733 1 62.73 ? N9 A06 600 A 1 HETATM 19 CL CL2 A06 . . . C 3 14.676 -10.776 -13.568 1 91.41 ? CL2 A06 600 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 19 #