data_4A0H # _model_server_result.job_id s-vbcajUIBrRPIYkZKKCwQ _model_server_result.datetime_utc '2024-12-29 13:44:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4a0h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1644}' # _entry.id 4A0H # _exptl.entry_id 4A0H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 247.142 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "PYRIDOXAL-5'-PHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.89 _cell.angle_gamma 90 _cell.entry_id 4A0H _cell.length_a 235.32 _cell.length_b 76.94 _cell.length_c 89.22 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4A0H _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 664 A LYS 644 1_555 C C4A PLP . A PLP 1644 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale2 B NZ LYS 664 B LYS 644 1_555 G C4A PLP . B PLP 1644 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? # _chem_comp.formula 'C8 H10 N O6 P' _chem_comp.formula_weight 247.142 _chem_comp.id PLP _chem_comp.mon_nstd_flag . _chem_comp.name "PYRIDOXAL-5'-PHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'VITAMIN B6 Phosphate' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 PLP doub 287 n y N1 C6 PLP sing 288 n y C2 C2A PLP sing 289 n n C2 C3 PLP sing 290 n y C2A H2A1 PLP sing 291 n n C2A H2A2 PLP sing 292 n n C2A H2A3 PLP sing 293 n n C3 O3 PLP sing 294 n n C3 C4 PLP doub 295 n y O3 HO3 PLP sing 296 n n C4 C4A PLP sing 297 n n C4 C5 PLP sing 298 n y C4A O4A PLP doub 299 n n C4A H4A PLP sing 300 n n C5 C6 PLP doub 301 n y C5 C5A PLP sing 302 n n C6 H6 PLP sing 303 n n C5A O4P PLP sing 304 n n C5A H5A1 PLP sing 305 n n C5A H5A2 PLP sing 306 n n O4P P PLP sing 307 n n P O1P PLP doub 308 n n P O2P PLP sing 309 n n P O3P PLP sing 310 n n O2P HOP2 PLP sing 311 n n O3P HOP3 PLP sing 312 n n # _atom_sites.entry_id 4A0H _atom_sites.fract_transf_matrix[1][1] 0.00425 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001537 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012997 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011919 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PLP A 1 1644 1644 PLP PLP . D 3 KAP A 1 1808 1808 KAP KAP . E 3 KAP A 1 1809 1809 KAP KAP . F 4 TLA A 1 1810 1810 TLA TLA . G 2 PLP B 1 1644 1644 PLP PLP . H 3 KAP B 1 1808 1808 KAP KAP . I 3 KAP B 1 1809 1809 KAP KAP . J 4 TLA B 1 1810 1810 TLA TLA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 PLP . . . G 2 37.336 -10.61 2.526 1 54.25 ? N1 PLP 1644 B 1 HETATM 2 C C2 PLP . . . G 2 36.651 -9.419 2.355 1 66.62 ? C2 PLP 1644 B 1 HETATM 3 C C2A PLP . . . G 2 36.574 -8.805 0.988 1 41.15 ? C2A PLP 1644 B 1 HETATM 4 C C3 PLP . . . G 2 36.043 -8.789 3.452 1 61.01 ? C3 PLP 1644 B 1 HETATM 5 O O3 PLP . . . G 2 35.43 -7.716 3.28 1 47.49 ? O3 PLP 1644 B 1 HETATM 6 C C4 PLP . . . G 2 36.149 -9.372 4.73 1 43 ? C4 PLP 1644 B 1 HETATM 7 C C4A PLP . . . G 2 35.475 -8.673 5.864 1 42.92 ? C4A PLP 1644 B 1 HETATM 8 C C5 PLP . . . G 2 36.836 -10.584 4.882 1 49.79 ? C5 PLP 1644 B 1 HETATM 9 C C6 PLP . . . G 2 37.426 -11.19 3.774 1 43.75 ? C6 PLP 1644 B 1 HETATM 10 C C5A PLP . . . G 2 37.005 -11.277 6.2 1 64.55 ? C5A PLP 1644 B 1 HETATM 11 O O4P PLP . . . G 2 35.911 -11.66 7.073 1 80.55 ? O4P PLP 1644 B 1 HETATM 12 P P PLP . . . G 2 36.078 -11.612 8.683 1 66.9 ? P PLP 1644 B 1 HETATM 13 O O1P PLP . . . G 2 36.171 -10.144 8.908 1 50.58 ? O1P PLP 1644 B 1 HETATM 14 O O2P PLP . . . G 2 37.308 -12.373 9.03 1 47.94 ? O2P PLP 1644 B 1 HETATM 15 O O3P PLP . . . G 2 34.847 -12.277 9.18 1 72.58 ? O3P PLP 1644 B 1 # _model_server_stats.io_time_ms 102 _model_server_stats.parse_time_ms 151 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 243 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 15 #