data_4A0H # _model_server_result.job_id NbprYRP9deL09ezLlmEjMA _model_server_result.datetime_utc '2024-12-29 13:25:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4a0h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1809}' # _entry.id 4A0H # _exptl.entry_id 4A0H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 187.236 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '7-KETO-8-AMINOPELARGONIC ACID' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.89 _cell.angle_gamma 90 _cell.entry_id 4A0H _cell.length_a 235.32 _cell.length_b 76.94 _cell.length_c 89.22 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4A0H _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 H N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 664 A LYS 644 1_555 C C4A PLP . A PLP 1644 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale2 B NZ LYS 664 B LYS 644 1_555 G C4A PLP . B PLP 1644 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? # _chem_comp.formula 'C9 H17 N O3' _chem_comp.formula_weight 187.236 _chem_comp.id KAP _chem_comp.mon_nstd_flag . _chem_comp.name '7-KETO-8-AMINOPELARGONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CA C KAP sing 171 n n CA CB KAP sing 172 n n CA HA2 KAP sing 173 n n CA HA1 KAP sing 174 n n C OI1 KAP sing 175 n n C OI2 KAP doub 176 n n OI1 HO1 KAP sing 177 n n CB CG KAP sing 178 n n CB HB2 KAP sing 179 n n CB HB1 KAP sing 180 n n CG CD KAP sing 181 n n CG HG2 KAP sing 182 n n CG HG1 KAP sing 183 n n CD CE KAP sing 184 n n CD HD2 KAP sing 185 n n CD HD1 KAP sing 186 n n CE CZ KAP sing 187 n n CE HE2 KAP sing 188 n n CE HE1 KAP sing 189 n n CZ CH KAP sing 190 n n CZ O KAP doub 191 n n CH CS KAP sing 192 n n CH N KAP sing 193 n n CH HH KAP sing 194 n n CS HS3 KAP sing 195 n n CS HS2 KAP sing 196 n n CS HS1 KAP sing 197 n n N H1 KAP sing 198 n n N H2 KAP sing 199 n n # _atom_sites.entry_id 4A0H _atom_sites.fract_transf_matrix[1][1] 0.00425 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001537 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012997 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011919 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PLP A 1 1644 1644 PLP PLP . D 3 KAP A 1 1808 1808 KAP KAP . E 3 KAP A 1 1809 1809 KAP KAP . F 4 TLA A 1 1810 1810 TLA TLA . G 2 PLP B 1 1644 1644 PLP PLP . H 3 KAP B 1 1808 1808 KAP KAP . I 3 KAP B 1 1809 1809 KAP KAP . J 4 TLA B 1 1810 1810 TLA TLA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CA KAP . . . E 3 -6.093 -7.435 23.9 0.96 47.21 ? CA KAP 1809 A 1 HETATM 2 C C KAP . . . E 3 -6.1 -8.706 23.137 0.96 53.36 ? C KAP 1809 A 1 HETATM 3 O OI1 KAP . . . E 3 -7.199 -9.108 22.667 0.96 71.18 ? OI1 KAP 1809 A 1 HETATM 4 O OI2 KAP . . . E 3 -5.03 -9.372 22.991 0.96 38.58 ? OI2 KAP 1809 A 1 HETATM 5 C CB KAP . . . E 3 -6.967 -6.285 23.421 0.96 52.93 ? CB KAP 1809 A 1 HETATM 6 C CG KAP . . . E 3 -7.099 -5.066 24.335 0.96 67.9 ? CG KAP 1809 A 1 HETATM 7 C CD KAP . . . E 3 -8.034 -5.042 25.533 0.96 60.17 ? CD KAP 1809 A 1 HETATM 8 C CE KAP . . . E 3 -8.694 -3.724 25.891 0.96 52.42 ? CE KAP 1809 A 1 HETATM 9 C CZ KAP . . . E 3 -9.176 -3.322 27.307 0.96 62.02 ? CZ KAP 1809 A 1 HETATM 10 C CH KAP . . . E 3 -9.879 -2.016 27.462 0.96 69.39 ? CH KAP 1809 A 1 HETATM 11 C CS KAP . . . E 3 -11.069 -1.827 26.552 0.96 30.25 ? CS KAP 1809 A 1 HETATM 12 O O KAP . . . E 3 -9.002 -3.983 28.328 0.96 50.33 ? O KAP 1809 A 1 HETATM 13 N N KAP . . . E 3 -8.799 -1.06 27.247 0.96 84.25 ? N KAP 1809 A 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 13 #