data_4A0Z # _model_server_result.job_id -rTozlUWKcb8SOTizCwEOQ _model_server_result.datetime_utc '2024-10-10 02:34:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4a0z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":201}' # _entry.id 4A0Z # _exptl.entry_id 4A0Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 853.58 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MALONYL-COENZYME A' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.31 _cell.angle_gamma 90 _cell.entry_id 4A0Z _cell.length_a 53.38 _cell.length_b 68.5 _cell.length_c 61.16 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4A0Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C24 H38 N7 O19 P3 S' _chem_comp.formula_weight 853.58 _chem_comp.id MLC _chem_comp.mon_nstd_flag . _chem_comp.name 'MALONYL-COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C8 N9 MLC sing 237 n y C8 N7 MLC doub 238 n y C8 H8 MLC sing 239 n n N9 C4 MLC sing 240 n y N9 C1' MLC sing 241 n n C4 C5 MLC sing 242 n y C4 N3 MLC doub 243 n y C5 N7 MLC sing 244 n y C5 C6 MLC doub 245 n y N3 C2 MLC sing 246 n y C2 N1 MLC doub 247 n y C2 H2 MLC sing 248 n n N1 C6 MLC sing 249 n y C6 N6 MLC sing 250 n n N6 HN61 MLC sing 251 n n N6 HN62 MLC sing 252 n n C1' C2' MLC sing 253 n n C1' O4' MLC sing 254 n n C1' H1' MLC sing 255 n n C2' O2' MLC sing 256 n n C2' C3' MLC sing 257 n n C2' H2' MLC sing 258 n n O2' HO2 MLC sing 259 n n C3' O3' MLC sing 260 n n C3' C4' MLC sing 261 n n C3' H3' MLC sing 262 n n O3' P3 MLC sing 263 n n C4' O4' MLC sing 264 n n C4' C5' MLC sing 265 n n C4' H4' MLC sing 266 n n C5' O5' MLC sing 267 n n C5' "H5'1" MLC sing 268 n n C5' "H5'2" MLC sing 269 n n O5' P1 MLC sing 270 n n P1 O11 MLC doub 271 n n P1 O12 MLC sing 272 n n P1 O6 MLC sing 273 n n O12 H12 MLC sing 274 n n O6 P2 MLC sing 275 n n P2 O21 MLC doub 276 n n P2 O22 MLC sing 277 n n P2 O7 MLC sing 278 n n O22 H22 MLC sing 279 n n O7 CPB MLC sing 280 n n CPB CPA MLC sing 281 n n CPB HPB1 MLC sing 282 n n CPB HPB2 MLC sing 283 n n CPA CP7 MLC sing 284 n n CPA CP9 MLC sing 285 n n CPA CP8 MLC sing 286 n n CP7 OP3 MLC sing 287 n n CP7 CP6 MLC sing 288 n n CP7 HP7 MLC sing 289 n n CP9 HP91 MLC sing 290 n n CP9 HP92 MLC sing 291 n n CP9 HP93 MLC sing 292 n n CP8 HP81 MLC sing 293 n n CP8 HP82 MLC sing 294 n n CP8 HP83 MLC sing 295 n n OP3 HP3 MLC sing 296 n n CP6 OP2 MLC doub 297 n n CP6 NP2 MLC sing 298 n n NP2 CP5 MLC sing 299 n n NP2 HP2 MLC sing 300 n n CP5 CP4 MLC sing 301 n n CP5 HP51 MLC sing 302 n n CP5 HP52 MLC sing 303 n n CP4 CP3 MLC sing 304 n n CP4 HP41 MLC sing 305 n n CP4 HP42 MLC sing 306 n n CP3 OP1 MLC doub 307 n n CP3 NP1 MLC sing 308 n n NP1 CP2 MLC sing 309 n n NP1 HP1 MLC sing 310 n n CP2 CP1 MLC sing 311 n n CP2 HP21 MLC sing 312 n n CP2 HP22 MLC sing 313 n n CP1 S MLC sing 314 n n CP1 HP11 MLC sing 315 n n CP1 HP12 MLC sing 316 n n S CM1 MLC sing 317 n n P3 O31 MLC sing 318 n n P3 O32 MLC sing 319 n n P3 O33 MLC doub 320 n n O31 H31 MLC sing 321 n n O32 H32 MLC sing 322 n n CM1 CM2 MLC sing 323 n n CM1 OM2 MLC doub 324 n n CM2 CM3 MLC sing 325 n n CM2 HM21 MLC sing 326 n n CM2 HM22 MLC sing 327 n n CM3 OM3 MLC sing 328 n n CM3 OM4 MLC doub 329 n n OM3 HO3 MLC sing 330 n n # _atom_sites.entry_id 4A0Z _atom_sites.fract_transf_matrix[1][1] 0.018734 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007308 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014599 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017551 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MLC A 1 201 201 MLC MLC . D 2 MLC B 1 201 201 MLC MLC . E 3 HOH A 1 2001 2001 HOH HOH . E 3 HOH A 2 2002 2002 HOH HOH . E 3 HOH A 3 2003 2003 HOH HOH . E 3 HOH A 4 2004 2004 HOH HOH . E 3 HOH A 5 2005 2005 HOH HOH . E 3 HOH A 6 2006 2006 HOH HOH . E 3 HOH A 7 2007 2007 HOH HOH . E 3 HOH A 8 2008 2008 HOH HOH . E 3 HOH A 9 2009 2009 HOH HOH . E 3 HOH A 10 2010 2010 HOH HOH . E 3 HOH A 11 2011 2011 HOH HOH . E 3 HOH A 12 2012 2012 HOH HOH . E 3 HOH A 13 2013 2013 HOH HOH . E 3 HOH A 14 2014 2014 HOH HOH . E 3 HOH A 15 2015 2015 HOH HOH . E 3 HOH A 16 2016 2016 HOH HOH . E 3 HOH A 17 2017 2017 HOH HOH . E 3 HOH A 18 2018 2018 HOH HOH . E 3 HOH A 19 2019 2019 HOH HOH . E 3 HOH A 20 2020 2020 HOH HOH . E 3 HOH A 21 2021 2021 HOH HOH . E 3 HOH A 22 2022 2022 HOH HOH . E 3 HOH A 23 2023 2023 HOH HOH . E 3 HOH A 24 2024 2024 HOH HOH . E 3 HOH A 25 2025 2025 HOH HOH . E 3 HOH A 26 2026 2026 HOH HOH . E 3 HOH A 27 2027 2027 HOH HOH . E 3 HOH A 28 2028 2028 HOH HOH . E 3 HOH A 29 2029 2029 HOH HOH . E 3 HOH A 30 2030 2030 HOH HOH . E 3 HOH A 31 2031 2031 HOH HOH . E 3 HOH A 32 2032 2032 HOH HOH . E 3 HOH A 33 2033 2033 HOH HOH . E 3 HOH A 34 2034 2034 HOH HOH . E 3 HOH A 35 2035 2035 HOH HOH . E 3 HOH A 36 2036 2036 HOH HOH . E 3 HOH A 37 2037 2037 HOH HOH . E 3 HOH A 38 2038 2038 HOH HOH . E 3 HOH A 39 2039 2039 HOH HOH . E 3 HOH A 40 2040 2040 HOH HOH . E 3 HOH A 41 2041 2041 HOH HOH . E 3 HOH A 42 2042 2042 HOH HOH . E 3 HOH A 43 2043 2043 HOH HOH . E 3 HOH A 44 2044 2044 HOH HOH . E 3 HOH A 45 2045 2045 HOH HOH . E 3 HOH A 46 2046 2046 HOH HOH . E 3 HOH A 47 2047 2047 HOH HOH . E 3 HOH A 48 2048 2048 HOH HOH . E 3 HOH A 49 2049 2049 HOH HOH . E 3 HOH A 50 2050 2050 HOH HOH . E 3 HOH A 51 2051 2051 HOH HOH . E 3 HOH A 52 2052 2052 HOH HOH . E 3 HOH A 53 2053 2053 HOH HOH . E 3 HOH A 54 2054 2054 HOH HOH . E 3 HOH A 55 2055 2055 HOH HOH . E 3 HOH A 56 2056 2056 HOH HOH . E 3 HOH A 57 2057 2057 HOH HOH . E 3 HOH A 58 2058 2058 HOH HOH . E 3 HOH A 59 2059 2059 HOH HOH . E 3 HOH A 60 2060 2060 HOH HOH . E 3 HOH A 61 2061 2061 HOH HOH . E 3 HOH A 62 2062 2062 HOH HOH . E 3 HOH A 63 2063 2063 HOH HOH . E 3 HOH A 64 2064 2064 HOH HOH . E 3 HOH A 65 2065 2065 HOH HOH . E 3 HOH A 66 2066 2066 HOH HOH . E 3 HOH A 67 2067 2067 HOH HOH . E 3 HOH A 68 2068 2068 HOH HOH . E 3 HOH A 69 2069 2069 HOH HOH . E 3 HOH A 70 2070 2070 HOH HOH . E 3 HOH A 71 2071 2071 HOH HOH . E 3 HOH A 72 2072 2072 HOH HOH . E 3 HOH A 73 2073 2073 HOH HOH . E 3 HOH A 74 2074 2074 HOH HOH . E 3 HOH A 75 2075 2075 HOH HOH . E 3 HOH A 76 2076 2076 HOH HOH . E 3 HOH A 77 2077 2077 HOH HOH . E 3 HOH A 78 2078 2078 HOH HOH . E 3 HOH A 79 2079 2079 HOH HOH . E 3 HOH A 80 2080 2080 HOH HOH . E 3 HOH A 81 2081 2081 HOH HOH . E 3 HOH A 82 2082 2082 HOH HOH . E 3 HOH A 83 2083 2083 HOH HOH . E 3 HOH A 84 2084 2084 HOH HOH . E 3 HOH A 85 2085 2085 HOH HOH . E 3 HOH A 86 2086 2086 HOH HOH . E 3 HOH A 87 2087 2087 HOH HOH . E 3 HOH A 88 2088 2088 HOH HOH . E 3 HOH A 89 2089 2089 HOH HOH . E 3 HOH A 90 2090 2090 HOH HOH . E 3 HOH A 91 2091 2091 HOH HOH . E 3 HOH A 92 2092 2092 HOH HOH . E 3 HOH A 93 2093 2093 HOH HOH . E 3 HOH A 94 2094 2094 HOH HOH . E 3 HOH A 95 2095 2095 HOH HOH . E 3 HOH A 96 2096 2096 HOH HOH . E 3 HOH A 97 2097 2097 HOH HOH . E 3 HOH A 98 2098 2098 HOH HOH . E 3 HOH A 99 2099 2099 HOH HOH . F 3 HOH B 1 2001 2001 HOH HOH . F 3 HOH B 2 2002 2002 HOH HOH . F 3 HOH B 3 2003 2003 HOH HOH . F 3 HOH B 4 2004 2004 HOH HOH . F 3 HOH B 5 2005 2005 HOH HOH . F 3 HOH B 6 2006 2006 HOH HOH . F 3 HOH B 7 2007 2007 HOH HOH . F 3 HOH B 8 2008 2008 HOH HOH . F 3 HOH B 9 2009 2009 HOH HOH . F 3 HOH B 10 2010 2010 HOH HOH . F 3 HOH B 11 2011 2011 HOH HOH . F 3 HOH B 12 2012 2012 HOH HOH . F 3 HOH B 13 2013 2013 HOH HOH . F 3 HOH B 14 2014 2014 HOH HOH . F 3 HOH B 15 2015 2015 HOH HOH . F 3 HOH B 16 2016 2016 HOH HOH . F 3 HOH B 17 2017 2017 HOH HOH . F 3 HOH B 18 2018 2018 HOH HOH . F 3 HOH B 19 2019 2019 HOH HOH . F 3 HOH B 20 2020 2020 HOH HOH . F 3 HOH B 21 2021 2021 HOH HOH . F 3 HOH B 22 2022 2022 HOH HOH . F 3 HOH B 23 2023 2023 HOH HOH . F 3 HOH B 24 2024 2024 HOH HOH . F 3 HOH B 25 2025 2025 HOH HOH . F 3 HOH B 26 2026 2026 HOH HOH . F 3 HOH B 27 2027 2027 HOH HOH . F 3 HOH B 28 2028 2028 HOH HOH . F 3 HOH B 29 2029 2029 HOH HOH . F 3 HOH B 30 2030 2030 HOH HOH . F 3 HOH B 31 2031 2031 HOH HOH . F 3 HOH B 32 2032 2032 HOH HOH . F 3 HOH B 33 2033 2033 HOH HOH . F 3 HOH B 34 2034 2034 HOH HOH . F 3 HOH B 35 2035 2035 HOH HOH . F 3 HOH B 36 2036 2036 HOH HOH . F 3 HOH B 37 2037 2037 HOH HOH . F 3 HOH B 38 2038 2038 HOH HOH . F 3 HOH B 39 2039 2039 HOH HOH . F 3 HOH B 40 2040 2040 HOH HOH . F 3 HOH B 41 2041 2041 HOH HOH . F 3 HOH B 42 2042 2042 HOH HOH . F 3 HOH B 43 2043 2043 HOH HOH . F 3 HOH B 44 2044 2044 HOH HOH . F 3 HOH B 45 2045 2045 HOH HOH . F 3 HOH B 46 2046 2046 HOH HOH . F 3 HOH B 47 2047 2047 HOH HOH . F 3 HOH B 48 2048 2048 HOH HOH . F 3 HOH B 49 2049 2049 HOH HOH . F 3 HOH B 50 2050 2050 HOH HOH . F 3 HOH B 51 2051 2051 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1' MLC . . . D 2 -7.957 -12.042 32.621 1 61.1 ? C1' MLC 201 B 1 HETATM 2 C C2' MLC . . . D 2 -6.811 -12.789 31.952 1 62.32 ? C2' MLC 201 B 1 HETATM 3 O O2' MLC . . . D 2 -6.026 -11.909 31.118 1 61.98 ? O2' MLC 201 B 1 HETATM 4 C C3' MLC . . . D 2 -7.514 -13.872 31.147 1 61.63 ? C3' MLC 201 B 1 HETATM 5 O O3' MLC . . . D 2 -6.815 -14.213 29.966 1 64.47 ? O3' MLC 201 B 1 HETATM 6 C C4' MLC . . . D 2 -8.817 -13.202 30.797 1 59.96 ? C4' MLC 201 B 1 HETATM 7 O O4' MLC . . . D 2 -9.165 -12.55 32.02 1 60.03 ? O4' MLC 201 B 1 HETATM 8 C C5' MLC . . . D 2 -9.903 -14.144 30.308 1 57.63 ? C5' MLC 201 B 1 HETATM 9 O O5' MLC . . . D 2 -11.094 -13.37 30.206 1 54.71 ? O5' MLC 201 B 1 HETATM 10 P P1 MLC . . . D 2 -12.149 -13.716 29.058 1 54.83 ? P1 MLC 201 B 1 HETATM 11 O O11 MLC . . . D 2 -13.24 -12.672 29.053 1 52.8 ? O11 MLC 201 B 1 HETATM 12 O O12 MLC . . . D 2 -12.436 -15.207 29.09 1 55.37 ? O12 MLC 201 B 1 HETATM 13 O O6 MLC . . . D 2 -11.205 -13.441 27.799 1 50 ? O6 MLC 201 B 1 HETATM 14 P P2 MLC . . . D 2 -11.381 -13.909 26.274 1 45.7 ? P2 MLC 201 B 1 HETATM 15 O O21 MLC . . . D 2 -12.515 -13.183 25.582 1 41.96 ? O21 MLC 201 B 1 HETATM 16 O O22 MLC . . . D 2 -11.028 -15.374 26.107 1 45.13 ? O22 MLC 201 B 1 HETATM 17 O O7 MLC . . . D 2 -10.063 -13.114 25.771 1 41.89 ? O7 MLC 201 B 1 HETATM 18 C CPB MLC . . . D 2 -10.063 -11.687 25.63 1 35.32 ? CPB MLC 201 B 1 HETATM 19 C CPA MLC . . . D 2 -8.587 -11.231 25.693 1 31.53 ? CPA MLC 201 B 1 HETATM 20 C CP7 MLC . . . D 2 -7.757 -12.081 24.724 1 28.15 ? CP7 MLC 201 B 1 HETATM 21 C CP9 MLC . . . D 2 -8.577 -9.723 25.453 1 29.86 ? CP9 MLC 201 B 1 HETATM 22 C CP8 MLC . . . D 2 -8.048 -11.448 27.099 1 32.15 ? CP8 MLC 201 B 1 HETATM 23 O OP3 MLC . . . D 2 -8.301 -11.97 23.394 1 28.87 ? OP3 MLC 201 B 1 HETATM 24 C CP6 MLC . . . D 2 -6.29 -11.675 24.619 1 27.3 ? CP6 MLC 201 B 1 HETATM 25 O OP2 MLC . . . D 2 -5.478 -11.978 25.469 1 27.17 ? OP2 MLC 201 B 1 HETATM 26 N NP2 MLC . . . D 2 -5.925 -10.978 23.542 1 24.62 ? NP2 MLC 201 B 1 HETATM 27 C CP5 MLC . . . D 2 -4.529 -10.544 23.39 1 23.21 ? CP5 MLC 201 B 1 HETATM 28 C CP4 MLC . . . D 2 -4.404 -9.141 23.991 1 21.96 ? CP4 MLC 201 B 1 HETATM 29 C CP3 MLC . . . D 2 -2.986 -8.626 23.792 1 25.3 ? CP3 MLC 201 B 1 HETATM 30 O OP1 MLC . . . D 2 -2.04 -9.412 23.865 1 23.89 ? OP1 MLC 201 B 1 HETATM 31 N NP1 MLC . . . D 2 -2.876 -7.306 23.563 1 21.7 ? NP1 MLC 201 B 1 HETATM 32 C CP2 MLC . . . D 2 -1.626 -6.727 23.076 1 25.96 ? CP2 MLC 201 B 1 HETATM 33 C CP1 MLC . . . D 2 -0.621 -6.494 24.216 1 23.07 ? CP1 MLC 201 B 1 HETATM 34 S S MLC . . . D 2 -1.092 -5.254 25.373 1 23.92 ? S MLC 201 B 1 HETATM 35 P P3 MLC . . . D 2 -6.691 -15.745 29.485 1 66.39 ? P3 MLC 201 B 1 HETATM 36 O O31 MLC . . . D 2 -5.265 -15.815 28.964 1 66.68 ? O31 MLC 201 B 1 HETATM 37 O O32 MLC . . . D 2 -6.927 -16.578 30.725 1 65.84 ? O32 MLC 201 B 1 HETATM 38 O O33 MLC . . . D 2 -7.775 -15.88 28.436 1 66.06 ? O33 MLC 201 B 1 HETATM 39 C CM1 MLC . . . D 2 -0.899 -3.787 24.596 1 22.67 ? CM1 MLC 201 B 1 HETATM 40 C CM2 MLC . . . D 2 -0.678 -2.577 25.454 1 21.29 ? CM2 MLC 201 B 1 HETATM 41 C CM3 MLC . . . D 2 0.758 -2.05 25.298 1 25.42 ? CM3 MLC 201 B 1 HETATM 42 O OM2 MLC . . . D 2 -0.893 -3.672 23.357 1 20.69 ? OM2 MLC 201 B 1 HETATM 43 O OM3 MLC . . . D 2 1.615 -2.705 24.662 1 24.06 ? OM3 MLC 201 B 1 HETATM 44 O OM4 MLC . . . D 2 1.033 -0.94 25.783 1 25.9 ? OM4 MLC 201 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 259 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 44 #