data_4A4L # _model_server_result.job_id rIpAQkO3HKzVWKrYnGMkUQ _model_server_result.datetime_utc '2024-10-18 04:32:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4a4l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1331}' # _entry.id 4A4L # _exptl.entry_id 4A4L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 475.467 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-METHYL-5-(2-{[5-(4-METHYLPIPERAZIN-1-YL)-2-(TRIFLUOROMETHOXY)PHENYL]AMINO}PYRIMIDIN-4-YL)-1H-PYRROLE-3-CARBOXAMIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4A4L _cell.length_a 66.595 _cell.length_b 66.595 _cell.length_c 154.035 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4A4L _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_675 x-y+1,-y+2,-z+1/3 1 0 0 0 -1 0 0 0 -1 0 115.345924 51.345 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 59 A HIS 93 1_555 B ZN ZN . A ZN 1329 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? metalc ? metalc2 A SG CYS 178 A CYS 212 1_555 B ZN ZN . A ZN 1329 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? metalc ? metalc3 A SG CYS 221 A CYS 255 5_675 B ZN ZN . A ZN 1329 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc4 B ZN ZN . A ZN 1329 1_555 C O41 TLA . A TLA 1330 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.646 ? metalc ? metalc5 B ZN ZN . A ZN 1329 1_555 C O4 TLA . A TLA 1330 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? # _chem_comp.formula 'C22 H24 F3 N7 O2' _chem_comp.formula_weight 475.467 _chem_comp.id 939 _chem_comp.mon_nstd_flag . _chem_comp.name 1-METHYL-5-(2-{[5-(4-METHYLPIPERAZIN-1-YL)-2-(TRIFLUOROMETHOXY)PHENYL]AMINO}PYRIMIDIN-4-YL)-1H-PYRROLE-3-CARBOXAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 939 sing 1 n y N1 C6 939 doub 2 n y C2 N3 939 doub 3 n y C2 N7 939 sing 4 n n N3 C4 939 sing 5 n y C4 C5 939 doub 6 n y C4 C8 939 sing 7 n n C5 C6 939 sing 8 n y N7 C16 939 sing 9 n n C8 N9 939 sing 10 n y C8 C12 939 doub 11 n y N9 C10 939 sing 12 n y N9 C27 939 sing 13 n n C10 C11 939 doub 14 n y C11 C12 939 sing 15 n y C11 C13 939 sing 16 n n C13 N14 939 sing 17 n n C13 O15 939 doub 18 n n C16 C17 939 sing 19 n y C16 C21 939 doub 20 n y C17 C18 939 doub 21 n y C17 O22 939 sing 22 n n C18 C19 939 sing 23 n y C19 C20 939 doub 24 n y C20 C21 939 sing 25 n y C20 N28 939 sing 26 n n O22 C23 939 sing 27 n n C23 F24 939 sing 28 n n C23 F25 939 sing 29 n n C23 F26 939 sing 30 n n N28 C29 939 sing 31 n n N28 C33 939 sing 32 n n C29 C30 939 sing 33 n n C30 N31 939 sing 34 n n N31 C32 939 sing 35 n n N31 C34 939 sing 36 n n C32 C33 939 sing 37 n n C6 H6 939 sing 38 n n N7 H7 939 sing 39 n n C5 H5 939 sing 40 n n C12 H12 939 sing 41 n n C10 H10 939 sing 42 n n C27 H271 939 sing 43 n n C27 H272 939 sing 44 n n C27 H273 939 sing 45 n n N14 H141 939 sing 46 n n N14 H142 939 sing 47 n n C21 H21 939 sing 48 n n C18 H18 939 sing 49 n n C19 H19 939 sing 50 n n C29 H291 939 sing 51 n n C29 H292 939 sing 52 n n C33 H331 939 sing 53 n n C33 H332 939 sing 54 n n C30 H301 939 sing 55 n n C30 H302 939 sing 56 n n C32 H321 939 sing 57 n n C32 H322 939 sing 58 n n C34 H341 939 sing 59 n n C34 H342 939 sing 60 n n C34 H343 939 sing 61 n n # _atom_sites.entry_id 4A4L _atom_sites.fract_transf_matrix[1][1] 0.015016 _atom_sites.fract_transf_matrix[1][2] 0.00867 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017339 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006492 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 1329 1329 ZN ZN . C 3 TLA A 1 1330 1330 TLA TLA . D 4 939 A 1 1331 1331 939 939 . E 5 HOH A 1 2001 2001 HOH HOH . E 5 HOH A 2 2002 2002 HOH HOH . E 5 HOH A 3 2003 2003 HOH HOH . E 5 HOH A 4 2004 2004 HOH HOH . E 5 HOH A 5 2005 2005 HOH HOH . E 5 HOH A 6 2006 2006 HOH HOH . E 5 HOH A 7 2007 2007 HOH HOH . E 5 HOH A 8 2008 2008 HOH HOH . E 5 HOH A 9 2009 2009 HOH HOH . E 5 HOH A 10 2010 2010 HOH HOH . E 5 HOH A 11 2011 2011 HOH HOH . E 5 HOH A 12 2012 2012 HOH HOH . E 5 HOH A 13 2013 2013 HOH HOH . E 5 HOH A 14 2014 2014 HOH HOH . E 5 HOH A 15 2015 2015 HOH HOH . E 5 HOH A 16 2016 2016 HOH HOH . E 5 HOH A 17 2017 2017 HOH HOH . E 5 HOH A 18 2018 2018 HOH HOH . E 5 HOH A 19 2019 2019 HOH HOH . E 5 HOH A 20 2020 2020 HOH HOH . E 5 HOH A 21 2021 2021 HOH HOH . E 5 HOH A 22 2022 2022 HOH HOH . E 5 HOH A 23 2023 2023 HOH HOH . E 5 HOH A 24 2024 2024 HOH HOH . E 5 HOH A 25 2025 2025 HOH HOH . E 5 HOH A 26 2026 2026 HOH HOH . E 5 HOH A 27 2027 2027 HOH HOH . E 5 HOH A 28 2028 2028 HOH HOH . E 5 HOH A 29 2029 2029 HOH HOH . E 5 HOH A 30 2030 2030 HOH HOH . E 5 HOH A 31 2031 2031 HOH HOH . E 5 HOH A 32 2032 2032 HOH HOH . E 5 HOH A 33 2033 2033 HOH HOH . E 5 HOH A 34 2034 2034 HOH HOH . E 5 HOH A 35 2035 2035 HOH HOH . E 5 HOH A 36 2036 2036 HOH HOH . E 5 HOH A 37 2037 2037 HOH HOH . E 5 HOH A 38 2038 2038 HOH HOH . E 5 HOH A 39 2039 2039 HOH HOH . E 5 HOH A 40 2040 2040 HOH HOH . E 5 HOH A 41 2041 2041 HOH HOH . E 5 HOH A 42 2042 2042 HOH HOH . E 5 HOH A 43 2043 2043 HOH HOH . E 5 HOH A 44 2044 2044 HOH HOH . E 5 HOH A 45 2045 2045 HOH HOH . E 5 HOH A 46 2046 2046 HOH HOH . E 5 HOH A 47 2047 2047 HOH HOH . E 5 HOH A 48 2048 2048 HOH HOH . E 5 HOH A 49 2049 2049 HOH HOH . E 5 HOH A 50 2050 2050 HOH HOH . E 5 HOH A 51 2051 2051 HOH HOH . E 5 HOH A 52 2052 2052 HOH HOH . E 5 HOH A 53 2053 2053 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 939 . . . D 4 10.851 42.606 8.299 1 35.04 ? N1 939 1331 A 1 HETATM 2 C C2 939 . . . D 4 11.068 43.863 8.538 1 34.81 ? C2 939 1331 A 1 HETATM 3 N N3 939 . . . D 4 10.573 44.47 9.717 1 35.23 ? N3 939 1331 A 1 HETATM 4 C C4 939 . . . D 4 9.897 43.809 10.583 1 32.86 ? C4 939 1331 A 1 HETATM 5 C C5 939 . . . D 4 9.638 42.382 10.33 1 32.28 ? C5 939 1331 A 1 HETATM 6 C C6 939 . . . D 4 10.118 41.819 9.209 1 32.77 ? C6 939 1331 A 1 HETATM 7 N N7 939 . . . D 4 11.796 44.608 7.596 1 36.23 ? N7 939 1331 A 1 HETATM 8 C C8 939 . . . D 4 9.373 44.499 11.795 1 30.56 ? C8 939 1331 A 1 HETATM 9 N N9 939 . . . D 4 9.775 45.771 12.3 1 31.1 ? N9 939 1331 A 1 HETATM 10 C C10 939 . . . D 4 9.027 46.07 13.431 1 29.49 ? C10 939 1331 A 1 HETATM 11 C C11 939 . . . D 4 8.204 45.039 13.612 1 30.57 ? C11 939 1331 A 1 HETATM 12 C C12 939 . . . D 4 8.411 44.023 12.579 1 29.15 ? C12 939 1331 A 1 HETATM 13 C C13 939 . . . D 4 7.216 44.943 14.692 1 31.03 ? C13 939 1331 A 1 HETATM 14 N N14 939 . . . D 4 6.643 46.091 15.199 1 32.47 ? N14 939 1331 A 1 HETATM 15 O O15 939 . . . D 4 6.863 43.847 15.131 1 32.45 ? O15 939 1331 A 1 HETATM 16 C C16 939 . . . D 4 12.048 46.021 7.618 1 35.17 ? C16 939 1331 A 1 HETATM 17 C C17 939 . . . D 4 13.242 46.41 7.148 1 36.38 ? C17 939 1331 A 1 HETATM 18 C C18 939 . . . D 4 13.589 47.883 7.124 1 34.02 ? C18 939 1331 A 1 HETATM 19 C C19 939 . . . D 4 12.711 48.803 7.567 1 32.41 ? C19 939 1331 A 1 HETATM 20 C C20 939 . . . D 4 11.381 48.394 8.092 1 32.02 ? C20 939 1331 A 1 HETATM 21 C C21 939 . . . D 4 11.065 47.05 8.114 1 31.62 ? C21 939 1331 A 1 HETATM 22 O O22 939 . . . D 4 14.115 45.356 6.681 1 36.61 ? O22 939 1331 A 1 HETATM 23 C C23 939 . . . D 4 14.776 45.558 5.394 1 37.91 ? C23 939 1331 A 1 HETATM 24 F F24 939 . . . D 4 15.788 46.467 5.519 1 38.01 ? F24 939 1331 A 1 HETATM 25 F F25 939 . . . D 4 13.889 45.995 4.419 1 40.86 ? F25 939 1331 A 1 HETATM 26 F F26 939 . . . D 4 15.31 44.368 4.98 1 40.75 ? F26 939 1331 A 1 HETATM 27 C C27 939 . . . D 4 10.781 46.649 11.757 1 28.12 ? C27 939 1331 A 1 HETATM 28 N N28 939 . . . D 4 10.46 49.415 8.548 1 30.29 ? N28 939 1331 A 1 HETATM 29 C C29 939 . . . D 4 9.008 49.241 8.305 1 28.71 ? C29 939 1331 A 1 HETATM 30 C C30 939 . . . D 4 8.116 50.089 9.243 1 27.64 ? C30 939 1331 A 1 HETATM 31 N N31 939 . . . D 4 8.648 51.483 9.413 1 28.08 ? N31 939 1331 A 1 HETATM 32 C C32 939 . . . D 4 9.973 51.414 10.052 1 27 ? C32 939 1331 A 1 HETATM 33 C C33 939 . . . D 4 11.001 50.637 9.178 1 28.58 ? C33 939 1331 A 1 HETATM 34 C C34 939 . . . D 4 7.746 52.258 10.288 1 20.66 ? C34 939 1331 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 34 #