data_4A4M # _model_server_result.job_id fZSYtQhxlXfEieYTIQxBtw _model_server_result.datetime_utc '2024-11-13 03:05:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4a4m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1403}' # _entry.id 4A4M # _exptl.entry_id 4A4M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 292.369 _entity.id 6 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'octyl beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4A4M _cell.length_a 242.19 _cell.length_b 242.19 _cell.length_c 109.829 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4A4M _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_556 y,x,-z+1 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 109.829 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 C 1 NAG A 1405 NAG 3 n C NAG 2 C 2 NAG A 1406 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 3 A CYS 2 1_555 A SG CYS 283 A CYS 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf2 A SG CYS 111 A CYS 110 1_555 A SG CYS 188 A CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? covale ? covale1 A C ACE 1 A ACE 0 1_555 A N MET 2 A MET 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? covale ? covale2 A ND2 ASN 16 A ASN 15 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale3 A NZ LYS 297 A LYS 296 1_555 D C15 RET . A RET 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale4 A SG CYS 324 A CYS 323 1_555 G C1 PLM . A PLM 1404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.687 ? covale ? covale5 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? # _chem_comp.formula 'C14 H28 O6' _chem_comp.formula_weight 292.369 _chem_comp.id BOG _chem_comp.mon_nstd_flag n _chem_comp.name 'octyl beta-D-glucopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'Beta-Octylglucoside;octyl beta-D-glucoside;octyl D-glucoside;octyl glucoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 BOG sing 82 n n C1 C2 BOG sing 83 n n C1 O5 BOG sing 84 n n C1 H1 BOG sing 85 n n O1 C1' BOG sing 86 n n C2 O2 BOG sing 87 n n C2 C3 BOG sing 88 n n C2 H2 BOG sing 89 n n O2 HO2 BOG sing 90 n n C3 O3 BOG sing 91 n n C3 C4 BOG sing 92 n n C3 H3 BOG sing 93 n n O3 HO3 BOG sing 94 n n C4 O4 BOG sing 95 n n C4 C5 BOG sing 96 n n C4 H4 BOG sing 97 n n O4 HO4 BOG sing 98 n n C5 O5 BOG sing 99 n n C5 C6 BOG sing 100 n n C5 H5 BOG sing 101 n n C6 O6 BOG sing 102 n n C6 H61 BOG sing 103 n n C6 H62 BOG sing 104 n n O6 HO6 BOG sing 105 n n C1' C2' BOG sing 106 n n C1' "H1'1" BOG sing 107 n n C1' "H1'2" BOG sing 108 n n C2' C3' BOG sing 109 n n C2' "H2'1" BOG sing 110 n n C2' "H2'2" BOG sing 111 n n C3' C4' BOG sing 112 n n C3' "H3'1" BOG sing 113 n n C3' "H3'2" BOG sing 114 n n C4' C5' BOG sing 115 n n C4' "H4'1" BOG sing 116 n n C4' "H4'2" BOG sing 117 n n C5' C6' BOG sing 118 n n C5' "H5'1" BOG sing 119 n n C5' "H5'2" BOG sing 120 n n C6' C7' BOG sing 121 n n C6' "H6'1" BOG sing 122 n n C6' "H6'2" BOG sing 123 n n C7' C8' BOG sing 124 n n C7' "H7'1" BOG sing 125 n n C7' "H7'2" BOG sing 126 n n C8' "H8'1" BOG sing 127 n n C8' "H8'2" BOG sing 128 n n C8' "H8'3" BOG sing 129 n n # _pdbx_chem_comp_identifier.comp_id BOG _pdbx_chem_comp_identifier.identifier b-octylglucoside _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 4A4M _atom_sites.fract_transf_matrix[1][1] 0.004129 _atom_sites.fract_transf_matrix[1][2] 0.002384 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004768 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009105 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 RET A 1 401 401 RET RET . E 5 ACT A 1 1402 1402 ACT ACT . F 6 BOG A 1 1403 1403 BOG BOG . G 7 PLM A 1 1404 1404 PLM PLM . H 8 HOH A 1 2001 2001 HOH HOH . H 8 HOH A 2 2002 2002 HOH HOH . H 8 HOH A 3 2003 2003 HOH HOH . H 8 HOH A 4 2004 2004 HOH HOH . H 8 HOH A 5 2005 2005 HOH HOH . H 8 HOH A 6 2006 2006 HOH HOH . H 8 HOH A 7 2007 2007 HOH HOH . H 8 HOH A 8 2008 2008 HOH HOH . H 8 HOH A 9 2009 2009 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BOG . . . F 6 -11.387 28.303 47.079 1 115.93 ? C1 BOG 1403 A 1 HETATM 2 O O1 BOG . . . F 6 -10.737 28.507 45.817 1 111.7 ? O1 BOG 1403 A 1 HETATM 3 C C2 BOG . . . F 6 -12.865 28.736 47.022 1 123.29 ? C2 BOG 1403 A 1 HETATM 4 O O2 BOG . . . F 6 -12.997 30.143 46.671 1 125.79 ? O2 BOG 1403 A 1 HETATM 5 C C3 BOG . . . F 6 -13.52 28.397 48.341 1 124.5 ? C3 BOG 1403 A 1 HETATM 6 O O3 BOG . . . F 6 -14.924 28.674 48.237 1 124.06 ? O3 BOG 1403 A 1 HETATM 7 C C4 BOG . . . F 6 -13.332 26.904 48.613 1 121.4 ? C4 BOG 1403 A 1 HETATM 8 O O4 BOG . . . F 6 -13.935 26.575 49.879 1 124.91 ? O4 BOG 1403 A 1 HETATM 9 C C5 BOG . . . F 6 -11.846 26.575 48.67 1 112.97 ? C5 BOG 1403 A 1 HETATM 10 O O5 BOG . . . F 6 -11.25 26.912 47.42 1 111.14 ? O5 BOG 1403 A 1 HETATM 11 C C6 BOG . . . F 6 -11.623 25.062 48.778 1 113.65 ? C6 BOG 1403 A 1 HETATM 12 O O6 BOG . . . F 6 -10.216 24.759 48.728 1 105.6 ? O6 BOG 1403 A 1 HETATM 13 C C1' BOG . . . F 6 -10.541 29.812 45.274 1 101.63 ? C1' BOG 1403 A 1 HETATM 14 C C2' BOG . . . F 6 -9.59 29.539 44.113 1 89.72 ? C2' BOG 1403 A 1 HETATM 15 C C3' BOG . . . F 6 -9.189 30.769 43.33 1 73.01 ? C3' BOG 1403 A 1 HETATM 16 C C4' BOG . . . F 6 -8.278 30.269 42.222 1 69.12 ? C4' BOG 1403 A 1 HETATM 17 C C5' BOG . . . F 6 -7.852 31.425 41.356 1 65.04 ? C5' BOG 1403 A 1 HETATM 18 C C6' BOG . . . F 6 -6.981 30.932 40.217 1 66.82 ? C6' BOG 1403 A 1 HETATM 19 C C7' BOG . . . F 6 -6.632 32.163 39.392 1 71.03 ? C7' BOG 1403 A 1 HETATM 20 C C8' BOG . . . F 6 -5.77 31.75 38.213 1 72.92 ? C8' BOG 1403 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 20 #