data_4A4M # _model_server_result.job_id pLGBtfUCkmSOdY2ppi_qJw _model_server_result.datetime_utc '2024-11-13 02:53:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4a4m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1404}' # _entry.id 4A4M # _exptl.entry_id 4A4M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 256.424 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PALMITIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4A4M _cell.length_a 242.19 _cell.length_b 242.19 _cell.length_c 109.829 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4A4M _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_556 y,x,-z+1 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 109.829 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 C 1 NAG A 1405 NAG 3 n C NAG 2 C 2 NAG A 1406 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 3 A CYS 2 1_555 A SG CYS 283 A CYS 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf2 A SG CYS 111 A CYS 110 1_555 A SG CYS 188 A CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? covale ? covale1 A C ACE 1 A ACE 0 1_555 A N MET 2 A MET 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? covale ? covale2 A ND2 ASN 16 A ASN 15 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale3 A NZ LYS 297 A LYS 296 1_555 D C15 RET . A RET 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale4 A SG CYS 324 A CYS 323 1_555 G C1 PLM . A PLM 1404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.687 ? covale ? covale5 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? # _chem_comp.formula 'C16 H32 O2' _chem_comp.formula_weight 256.424 _chem_comp.id PLM _chem_comp.mon_nstd_flag . _chem_comp.name 'PALMITIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PLM sing 350 n n C1 O2 PLM doub 351 n n C1 C2 PLM sing 352 n n O1 H PLM sing 353 n n C2 C3 PLM sing 354 n n C2 H21 PLM sing 355 n n C2 H22 PLM sing 356 n n C3 C4 PLM sing 357 n n C3 H31 PLM sing 358 n n C3 H32 PLM sing 359 n n C4 C5 PLM sing 360 n n C4 H41 PLM sing 361 n n C4 H42 PLM sing 362 n n C5 C6 PLM sing 363 n n C5 H51 PLM sing 364 n n C5 H52 PLM sing 365 n n C6 C7 PLM sing 366 n n C6 H61 PLM sing 367 n n C6 H62 PLM sing 368 n n C7 C8 PLM sing 369 n n C7 H71 PLM sing 370 n n C7 H72 PLM sing 371 n n C8 C9 PLM sing 372 n n C8 H81 PLM sing 373 n n C8 H82 PLM sing 374 n n C9 CA PLM sing 375 n n C9 H91 PLM sing 376 n n C9 H92 PLM sing 377 n n CA CB PLM sing 378 n n CA HA1 PLM sing 379 n n CA HA2 PLM sing 380 n n CB CC PLM sing 381 n n CB HB1 PLM sing 382 n n CB HB2 PLM sing 383 n n CC CD PLM sing 384 n n CC HC1 PLM sing 385 n n CC HC2 PLM sing 386 n n CD CE PLM sing 387 n n CD HD1 PLM sing 388 n n CD HD2 PLM sing 389 n n CE CF PLM sing 390 n n CE HE1 PLM sing 391 n n CE HE2 PLM sing 392 n n CF CG PLM sing 393 n n CF HF1 PLM sing 394 n n CF HF2 PLM sing 395 n n CG HG1 PLM sing 396 n n CG HG2 PLM sing 397 n n CG HG3 PLM sing 398 n n # _atom_sites.entry_id 4A4M _atom_sites.fract_transf_matrix[1][1] 0.004129 _atom_sites.fract_transf_matrix[1][2] 0.002384 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004768 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009105 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 RET A 1 401 401 RET RET . E 5 ACT A 1 1402 1402 ACT ACT . F 6 BOG A 1 1403 1403 BOG BOG . G 7 PLM A 1 1404 1404 PLM PLM . H 8 HOH A 1 2001 2001 HOH HOH . H 8 HOH A 2 2002 2002 HOH HOH . H 8 HOH A 3 2003 2003 HOH HOH . H 8 HOH A 4 2004 2004 HOH HOH . H 8 HOH A 5 2005 2005 HOH HOH . H 8 HOH A 6 2006 2006 HOH HOH . H 8 HOH A 7 2007 2007 HOH HOH . H 8 HOH A 8 2008 2008 HOH HOH . H 8 HOH A 9 2009 2009 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PLM . . . G 7 24.908 14.791 55.487 1 109.58 ? C1 PLM 1404 A 1 HETATM 2 O O2 PLM . . . G 7 24.084 13.993 56.012 1 106.52 ? O2 PLM 1404 A 1 HETATM 3 C C2 PLM . . . G 7 25.097 16.177 56.202 1 94.49 ? C2 PLM 1404 A 1 HETATM 4 C C3 PLM . . . G 7 23.881 16.376 57.124 1 87.12 ? C3 PLM 1404 A 1 HETATM 5 C C4 PLM . . . G 7 23.83 17.614 58.058 1 79.67 ? C4 PLM 1404 A 1 HETATM 6 C C5 PLM . . . G 7 23.878 19.025 57.463 1 67.66 ? C5 PLM 1404 A 1 HETATM 7 C C6 PLM . . . G 7 23.689 20.039 58.63 1 59.49 ? C6 PLM 1404 A 1 HETATM 8 C C7 PLM . . . G 7 23.704 21.487 58.089 1 63.36 ? C7 PLM 1404 A 1 HETATM 9 C C8 PLM . . . G 7 23.423 22.561 59.162 1 56.27 ? C8 PLM 1404 A 1 HETATM 10 C C9 PLM . . . G 7 23.465 23.96 58.492 1 60.36 ? C9 PLM 1404 A 1 HETATM 11 C CA PLM . . . G 7 23.109 25.06 59.524 1 66.44 ? CA PLM 1404 A 1 HETATM 12 C CB PLM . . . G 7 23.164 26.492 58.949 1 58.48 ? CB PLM 1404 A 1 HETATM 13 C CC PLM . . . G 7 24.597 26.675 58.512 1 56.17 ? CC PLM 1404 A 1 HETATM 14 C CD PLM . . . G 7 24.926 28.029 57.877 1 70.2 ? CD PLM 1404 A 1 HETATM 15 C CE PLM . . . G 7 24.745 29.294 58.731 1 67 ? CE PLM 1404 A 1 HETATM 16 C CF PLM . . . G 7 25.231 30.462 57.837 1 64.1 ? CF PLM 1404 A 1 HETATM 17 C CG PLM . . . G 7 25.145 31.815 58.547 1 65.78 ? CG PLM 1404 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 16 _model_server_stats.element_count 17 #