data_4A4O # _model_server_result.job_id GNXV1CvaPaSiAAFBr_ZSTg _model_server_result.datetime_utc '2024-12-23 11:59:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4a4o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1332}' # _entry.id 4A4O # _exptl.entry_id 4A4O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 501.504 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-METHYL-2-(2-{[5-(4-METHYLPIPERAZIN-1-YL)-2-(TRIFLUOROMETHOXY)PHENYL]AMINO}PYRIMIDIN-4-YL)-1,5,6,7-TETRAHYDRO-4H-PYRROLO[3,2-C]PYRIDIN-4-ONE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4A4O _cell.length_a 66.546 _cell.length_b 66.546 _cell.length_c 154.248 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4A4O _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_675 x-y+1,-y+2,-z+1/3 1 0 0 0 -1 0 0 0 -1 0 115.261053 51.416 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 59 A HIS 93 1_555 B ZN ZN . A ZN 1330 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? metalc ? metalc2 A SG CYS 178 A CYS 212 1_555 B ZN ZN . A ZN 1330 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? metalc ? metalc3 A SG CYS 221 A CYS 255 5_675 B ZN ZN . A ZN 1330 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? metalc ? metalc4 B ZN ZN . A ZN 1330 1_555 C O4 TLA . A TLA 1331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? # _chem_comp.formula 'C24 H26 F3 N7 O2' _chem_comp.formula_weight 501.504 _chem_comp.id 664 _chem_comp.mon_nstd_flag . _chem_comp.name 1-METHYL-2-(2-{[5-(4-METHYLPIPERAZIN-1-YL)-2-(TRIFLUOROMETHOXY)PHENYL]AMINO}PYRIMIDIN-4-YL)-1,5,6,7-TETRAHYDRO-4H-PYRROLO[3,2-C]PYRIDIN-4-ONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 664 sing 1 n y N1 C6 664 doub 2 n y C2 N3 664 doub 3 n y C2 N7 664 sing 4 n n N3 C4 664 sing 5 n y C4 C5 664 doub 6 n y C4 C26 664 sing 7 n n C5 C6 664 sing 8 n y N7 C8 664 sing 9 n n C8 C9 664 sing 10 n y C8 C13 664 doub 11 n y C9 C10 664 doub 12 n y C9 O14 664 sing 13 n n C10 C11 664 sing 14 n y C11 C12 664 doub 15 n y C12 C13 664 sing 16 n y C12 N15 664 sing 17 n n O14 C22 664 sing 18 n n N15 C16 664 sing 19 n n N15 C20 664 sing 20 n n C16 C17 664 sing 21 n n C17 N18 664 sing 22 n n N18 C19 664 sing 23 n n N18 C21 664 sing 24 n n C19 C20 664 sing 25 n n C22 F23 664 sing 26 n n C22 F24 664 sing 27 n n C22 F25 664 sing 28 n n C26 N27 664 sing 29 n y C26 C28 664 doub 30 n y N27 C30 664 sing 31 n y N27 C36 664 sing 32 n n C28 C29 664 sing 33 n y C29 C30 664 doub 34 n y C29 C34 664 sing 35 n n C30 C31 664 sing 36 n n C31 C32 664 sing 37 n n C32 N33 664 sing 38 n n N33 C34 664 sing 39 n n C34 O35 664 doub 40 n n C6 H6 664 sing 41 n n N7 H7 664 sing 42 n n C5 H5 664 sing 43 n n C13 H13 664 sing 44 n n C10 H10 664 sing 45 n n C11 HA 664 sing 46 n n C16 H161 664 sing 47 n n C16 H162 664 sing 48 n n C20 H201 664 sing 49 n n C20 H202 664 sing 50 n n C17 H171 664 sing 51 n n C17 H172 664 sing 52 n n C19 H191 664 sing 53 n n C19 H192 664 sing 54 n n C21 H211 664 sing 55 n n C21 H212 664 sing 56 n n C21 H213 664 sing 57 n n C28 H28 664 sing 58 n n C36 H361 664 sing 59 n n C36 H362 664 sing 60 n n C36 H363 664 sing 61 n n C31 H311 664 sing 62 n n C31 H312 664 sing 63 n n C32 H321 664 sing 64 n n C32 H322 664 sing 65 n n N33 H33 664 sing 66 n n # _atom_sites.entry_id 4A4O _atom_sites.fract_transf_matrix[1][1] 0.015027 _atom_sites.fract_transf_matrix[1][2] 0.008676 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017352 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006483 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 1330 1330 ZN ZN . C 3 TLA A 1 1331 1331 TLA TLA . D 4 664 A 1 1332 1332 664 664 . E 5 HOH A 1 2001 2001 HOH HOH . E 5 HOH A 2 2002 2002 HOH HOH . E 5 HOH A 3 2003 2003 HOH HOH . E 5 HOH A 4 2004 2004 HOH HOH . E 5 HOH A 5 2005 2005 HOH HOH . E 5 HOH A 6 2006 2006 HOH HOH . E 5 HOH A 7 2007 2007 HOH HOH . E 5 HOH A 8 2008 2008 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 664 . . . D 4 10.677 42.64 8.117 1 37.5 ? N1 664 1332 A 1 HETATM 2 C C2 664 . . . D 4 10.877 44.022 8.333 1 40.24 ? C2 664 1332 A 1 HETATM 3 C C6 664 . . . D 4 10.082 41.921 9.004 1 38.27 ? C6 664 1332 A 1 HETATM 4 N N3 664 . . . D 4 10.463 44.585 9.426 1 39.12 ? N3 664 1332 A 1 HETATM 5 N N7 664 . . . D 4 11.538 44.773 7.318 1 45.17 ? N7 664 1332 A 1 HETATM 6 C C4 664 . . . D 4 9.8 43.863 10.447 1 37.46 ? C4 664 1332 A 1 HETATM 7 C C5 664 . . . D 4 9.6 42.541 10.255 1 38.35 ? C5 664 1332 A 1 HETATM 8 C C26 664 . . . D 4 9.326 44.563 11.697 1 37.53 ? C26 664 1332 A 1 HETATM 9 C C8 664 . . . D 4 11.862 46.171 7.388 1 48.23 ? C8 664 1332 A 1 HETATM 10 C C10 664 . . . D 4 13.455 48.054 7.052 1 51.13 ? C10 664 1332 A 1 HETATM 11 C C9 664 . . . D 4 13.103 46.587 6.984 1 51.98 ? C9 664 1332 A 1 HETATM 12 C C11 664 . . . D 4 12.555 48.947 7.503 1 48.83 ? C11 664 1332 A 1 HETATM 13 C C13 664 . . . D 4 10.881 47.172 7.884 1 45.83 ? C13 664 1332 A 1 HETATM 14 C C12 664 . . . D 4 11.198 48.497 7.941 1 45.96 ? C12 664 1332 A 1 HETATM 15 O O14 664 . . . D 4 14.021 45.594 6.501 1 57.75 ? O14 664 1332 A 1 HETATM 16 N N15 664 . . . D 4 10.25 49.452 8.405 1 43.59 ? N15 664 1332 A 1 HETATM 17 C C16 664 . . . D 4 8.795 49.177 8.22 1 40.76 ? C16 664 1332 A 1 HETATM 18 C C17 664 . . . D 4 7.909 49.967 9.2 1 38.04 ? C17 664 1332 A 1 HETATM 19 N N18 664 . . . D 4 8.409 51.352 9.302 1 36.46 ? N18 664 1332 A 1 HETATM 20 C C19 664 . . . D 4 9.714 51.324 9.962 1 38.54 ? C19 664 1332 A 1 HETATM 21 C C20 664 . . . D 4 10.747 50.696 9.026 1 39.81 ? C20 664 1332 A 1 HETATM 22 C C21 664 . . . D 4 7.49 52.148 10.111 1 36.65 ? C21 664 1332 A 1 HETATM 23 C C22 664 . . . D 4 14.39 45.657 5.082 1 60.17 ? C22 664 1332 A 1 HETATM 24 F F23 664 . . . D 4 15.311 46.673 4.856 1 61.01 ? F23 664 1332 A 1 HETATM 25 F F24 664 . . . D 4 13.259 45.858 4.288 1 60.44 ? F24 664 1332 A 1 HETATM 26 F F25 664 . . . D 4 14.971 44.451 4.726 1 63.03 ? F25 664 1332 A 1 HETATM 27 N N27 664 . . . D 4 9.752 45.859 12.177 1 39.37 ? N27 664 1332 A 1 HETATM 28 C C28 664 . . . D 4 8.402 44.07 12.558 1 37.62 ? C28 664 1332 A 1 HETATM 29 C C29 664 . . . D 4 8.246 45.096 13.604 1 39.35 ? C29 664 1332 A 1 HETATM 30 C C30 664 . . . D 4 9.05 46.127 13.35 1 39.19 ? C30 664 1332 A 1 HETATM 31 C C31 664 . . . D 4 9.145 47.368 14.219 1 40.62 ? C31 664 1332 A 1 HETATM 32 C C32 664 . . . D 4 8.032 47.396 15.342 1 40.71 ? C32 664 1332 A 1 HETATM 33 N N33 664 . . . D 4 7.453 46.073 15.686 1 41.62 ? N33 664 1332 A 1 HETATM 34 C C34 664 . . . D 4 7.358 45.078 14.774 1 40.09 ? C34 664 1332 A 1 HETATM 35 O O35 664 . . . D 4 6.532 44.189 14.929 1 37.52 ? O35 664 1332 A 1 HETATM 36 C C36 664 . . . D 4 10.723 46.759 11.576 1 35.85 ? C36 664 1332 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 36 #