data_4A4X # _model_server_result.job_id GfyhNgBG9wSe0b_ZWOyJhg _model_server_result.datetime_utc '2025-06-17 23:37:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4a4x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1280}' # _entry.id 4A4X # _exptl.entry_id 4A4X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 540.6 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-(2-AMINO-5-{4-[(DIMETHYLAMINO)METHYL]THIOPHEN-2-YL}PYRIDIN-3-YL)-2-{(1R)-1-[2-(TRIFLUOROMETHYL)PHENYL]ETHOXY}BENZAMIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 127.12 _cell.angle_gamma 90 _cell.entry_id 4A4X _cell.length_a 101.223 _cell.length_b 56.909 _cell.length_c 74.408 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4A4X _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C28 H27 F3 N4 O2 S' _chem_comp.formula_weight 540.6 _chem_comp.id JUP _chem_comp.mon_nstd_flag . _chem_comp.name 4-(2-AMINO-5-{4-[(DIMETHYLAMINO)METHYL]THIOPHEN-2-YL}PYRIDIN-3-YL)-2-{(1R)-1-[2-(TRIFLUOROMETHYL)PHENYL]ETHOXY}BENZAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C01 C02 JUP sing 173 n n C02 O03 JUP sing 174 n n C02 C29 JUP sing 175 n n O03 C04 JUP sing 176 n n C04 C05 JUP sing 177 n y C04 C25 JUP doub 178 n y C05 C06 JUP doub 179 n y C06 C07 JUP sing 180 n n C06 C23 JUP sing 181 n y C07 C08 JUP doub 182 n y C07 C21 JUP sing 183 n y C08 C09 JUP sing 184 n y C09 C10 JUP sing 185 n n C09 C19 JUP doub 186 n y C10 C11 JUP doub 187 n y C10 S18 JUP sing 188 n y C11 C12 JUP sing 189 n y C12 C13 JUP sing 190 n n C12 C17 JUP doub 191 n y C13 N14 JUP sing 192 n n N14 C15 JUP sing 193 n n N14 C16 JUP sing 194 n n C17 S18 JUP sing 195 n y C19 N20 JUP sing 196 n y N20 C21 JUP doub 197 n y C21 N22 JUP sing 198 n n C23 C24 JUP doub 199 n y C24 C25 JUP sing 200 n y C25 C26 JUP sing 201 n n C26 N27 JUP sing 202 n n C26 O28 JUP doub 203 n n C29 C30 JUP sing 204 n y C29 C34 JUP doub 205 n y C30 C31 JUP doub 206 n y C31 C32 JUP sing 207 n y C32 C33 JUP doub 208 n y C33 C34 JUP sing 209 n y C34 C35 JUP sing 210 n n C35 F36 JUP sing 211 n n C35 F37 JUP sing 212 n n C35 F38 JUP sing 213 n n C01 H011 JUP sing 214 n n C01 H012 JUP sing 215 n n C01 H013 JUP sing 216 n n C02 H02 JUP sing 217 n n C05 H05 JUP sing 218 n n C23 H23 JUP sing 219 n n C08 H08 JUP sing 220 n n C19 H19 JUP sing 221 n n C11 H11 JUP sing 222 n n C13 H131 JUP sing 223 n n C13 H132 JUP sing 224 n n C17 H17 JUP sing 225 n n C15 H151 JUP sing 226 n n C15 H152 JUP sing 227 n n C15 H153 JUP sing 228 n n C16 H161 JUP sing 229 n n C16 H162 JUP sing 230 n n C16 H163 JUP sing 231 n n N22 H221 JUP sing 232 n n N22 H222 JUP sing 233 n n C24 H24 JUP sing 234 n n N27 H271 JUP sing 235 n n N27 H272 JUP sing 236 n n C30 H30 JUP sing 237 n n C31 H31 JUP sing 238 n n C32 H32 JUP sing 239 n n C33 H33 JUP sing 240 n n # _atom_sites.entry_id 4A4X _atom_sites.fract_transf_matrix[1][1] 0.009879 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007477 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017572 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016855 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 JUP A 1 1280 1280 JUP JUP . C 3 HOH A 1 2001 2001 HOH HOH . C 3 HOH A 2 2002 2002 HOH HOH . C 3 HOH A 3 2003 2003 HOH HOH . C 3 HOH A 4 2004 2004 HOH HOH . C 3 HOH A 5 2005 2005 HOH HOH . C 3 HOH A 6 2006 2006 HOH HOH . C 3 HOH A 7 2007 2007 HOH HOH . C 3 HOH A 8 2008 2008 HOH HOH . C 3 HOH A 9 2009 2009 HOH HOH . C 3 HOH A 10 2010 2010 HOH HOH . C 3 HOH A 11 2011 2011 HOH HOH . C 3 HOH A 12 2012 2012 HOH HOH . C 3 HOH A 13 2013 2013 HOH HOH . C 3 HOH A 14 2014 2014 HOH HOH . C 3 HOH A 15 2015 2015 HOH HOH . C 3 HOH A 16 2016 2016 HOH HOH . C 3 HOH A 17 2017 2017 HOH HOH . C 3 HOH A 18 2018 2018 HOH HOH . C 3 HOH A 19 2019 2019 HOH HOH . C 3 HOH A 20 2020 2020 HOH HOH . C 3 HOH A 21 2021 2021 HOH HOH . C 3 HOH A 22 2022 2022 HOH HOH . C 3 HOH A 23 2023 2023 HOH HOH . C 3 HOH A 24 2024 2024 HOH HOH . C 3 HOH A 25 2025 2025 HOH HOH . C 3 HOH A 26 2026 2026 HOH HOH . C 3 HOH A 27 2027 2027 HOH HOH . C 3 HOH A 28 2028 2028 HOH HOH . C 3 HOH A 29 2029 2029 HOH HOH . C 3 HOH A 30 2030 2030 HOH HOH . C 3 HOH A 31 2031 2031 HOH HOH . C 3 HOH A 32 2032 2032 HOH HOH . C 3 HOH A 33 2033 2033 HOH HOH . C 3 HOH A 34 2034 2034 HOH HOH . C 3 HOH A 35 2035 2035 HOH HOH . C 3 HOH A 36 2036 2036 HOH HOH . C 3 HOH A 37 2037 2037 HOH HOH . C 3 HOH A 38 2038 2038 HOH HOH . C 3 HOH A 39 2039 2039 HOH HOH . C 3 HOH A 40 2040 2040 HOH HOH . C 3 HOH A 41 2041 2041 HOH HOH . C 3 HOH A 42 2042 2042 HOH HOH . C 3 HOH A 43 2043 2043 HOH HOH . C 3 HOH A 44 2044 2044 HOH HOH . C 3 HOH A 45 2045 2045 HOH HOH . C 3 HOH A 46 2046 2046 HOH HOH . C 3 HOH A 47 2047 2047 HOH HOH . C 3 HOH A 48 2048 2048 HOH HOH . C 3 HOH A 49 2049 2049 HOH HOH . C 3 HOH A 50 2050 2050 HOH HOH . C 3 HOH A 51 2051 2051 HOH HOH . C 3 HOH A 52 2052 2052 HOH HOH . C 3 HOH A 53 2053 2053 HOH HOH . C 3 HOH A 54 2054 2054 HOH HOH . C 3 HOH A 55 2055 2055 HOH HOH . C 3 HOH A 56 2056 2056 HOH HOH . C 3 HOH A 57 2057 2057 HOH HOH . C 3 HOH A 58 2058 2058 HOH HOH . C 3 HOH A 59 2059 2059 HOH HOH . C 3 HOH A 60 2060 2060 HOH HOH . C 3 HOH A 61 2061 2061 HOH HOH . C 3 HOH A 62 2062 2062 HOH HOH . C 3 HOH A 63 2063 2063 HOH HOH . C 3 HOH A 64 2064 2064 HOH HOH . C 3 HOH A 65 2065 2065 HOH HOH . C 3 HOH A 66 2066 2066 HOH HOH . C 3 HOH A 67 2067 2067 HOH HOH . C 3 HOH A 68 2068 2068 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 JUP . . . B 2 1.224 -11.285 16.251 1 31.78 ? C01 JUP 1280 A 1 HETATM 2 C C02 JUP . . . B 2 1.889 -10.792 14.979 1 31.13 ? C02 JUP 1280 A 1 HETATM 3 O O03 JUP . . . B 2 2.976 -9.942 15.264 1 24.3 ? O03 JUP 1280 A 1 HETATM 4 C C04 JUP . . . B 2 3.598 -9.17 14.216 1 23.98 ? C04 JUP 1280 A 1 HETATM 5 C C05 JUP . . . B 2 2.898 -8.89 13.013 1 26.15 ? C05 JUP 1280 A 1 HETATM 6 C C06 JUP . . . B 2 3.55 -8.144 11.982 1 24.66 ? C06 JUP 1280 A 1 HETATM 7 C C07 JUP . . . B 2 2.864 -7.873 10.777 1 25.43 ? C07 JUP 1280 A 1 HETATM 8 C C08 JUP . . . B 2 2.265 -8.938 10.087 1 25.37 ? C08 JUP 1280 A 1 HETATM 9 C C09 JUP . . . B 2 1.569 -8.645 8.894 1 23.7 ? C09 JUP 1280 A 1 HETATM 10 C C10 JUP . . . B 2 0.968 -9.648 8.15 1 24.51 ? C10 JUP 1280 A 1 HETATM 11 C C11 JUP . . . B 2 0.432 -9.61 6.868 1 24.44 ? C11 JUP 1280 A 1 HETATM 12 C C12 JUP . . . B 2 -0.101 -10.766 6.391 1 31.35 ? C12 JUP 1280 A 1 HETATM 13 C C13 JUP . . . B 2 -0.706 -10.909 4.966 1 45.17 ? C13 JUP 1280 A 1 HETATM 14 N N14 JUP . . . B 2 -2.126 -10.463 4.83 1 58.12 ? N14 JUP 1280 A 1 HETATM 15 C C15 JUP . . . B 2 -2.177 -9.42 3.833 1 65.65 ? C15 JUP 1280 A 1 HETATM 16 C C16 JUP . . . B 2 -2.919 -11.61 4.357 1 64.61 ? C16 JUP 1280 A 1 HETATM 17 C C17 JUP . . . B 2 -0.06 -11.89 7.233 1 24.82 ? C17 JUP 1280 A 1 HETATM 18 S S18 JUP . . . B 2 0.749 -11.27 8.611 1 35.1 ? S18 JUP 1280 A 1 HETATM 19 C C19 JUP . . . B 2 1.51 -7.286 8.446 1 25.2 ? C19 JUP 1280 A 1 HETATM 20 N N20 JUP . . . B 2 2.09 -6.292 9.131 1 27.58 ? N20 JUP 1280 A 1 HETATM 21 C C21 JUP . . . B 2 2.765 -6.54 10.286 1 21.5 ? C21 JUP 1280 A 1 HETATM 22 N N22 JUP . . . B 2 3.389 -5.435 10.996 1 22.32 ? N22 JUP 1280 A 1 HETATM 23 C C23 JUP . . . B 2 4.864 -7.681 12.169 1 20.92 ? C23 JUP 1280 A 1 HETATM 24 C C24 JUP . . . B 2 5.542 -7.943 13.375 1 18.27 ? C24 JUP 1280 A 1 HETATM 25 C C25 JUP . . . B 2 4.914 -8.691 14.389 1 18.85 ? C25 JUP 1280 A 1 HETATM 26 C C26 JUP . . . B 2 5.636 -8.964 15.641 1 35.59 ? C26 JUP 1280 A 1 HETATM 27 N N27 JUP . . . B 2 5.029 -9.818 16.644 1 33.03 ? N27 JUP 1280 A 1 HETATM 28 O O28 JUP . . . B 2 6.715 -8.476 15.81 1 28 ? O28 JUP 1280 A 1 HETATM 29 C C29 JUP . . . B 2 2.138 -11.904 13.975 1 22.41 ? C29 JUP 1280 A 1 HETATM 30 C C30 JUP . . . B 2 3.35 -12.622 14.018 1 22.09 ? C30 JUP 1280 A 1 HETATM 31 C C31 JUP . . . B 2 3.615 -13.656 13.094 1 21.58 ? C31 JUP 1280 A 1 HETATM 32 C C32 JUP . . . B 2 2.638 -13.978 12.133 1 23.86 ? C32 JUP 1280 A 1 HETATM 33 C C33 JUP . . . B 2 1.385 -13.265 12.11 1 25.55 ? C33 JUP 1280 A 1 HETATM 34 C C34 JUP . . . B 2 1.137 -12.241 13.024 1 21.62 ? C34 JUP 1280 A 1 HETATM 35 C C35 JUP . . . B 2 -0.185 -11.483 12.927 1 32.05 ? C35 JUP 1280 A 1 HETATM 36 F F36 JUP . . . B 2 -0.875 -11.433 14.088 1 27.63 ? F36 JUP 1280 A 1 HETATM 37 F F37 JUP . . . B 2 0.031 -10.192 12.551 1 27.3 ? F37 JUP 1280 A 1 HETATM 38 F F38 JUP . . . B 2 -0.908 -12.114 12.024 1 28.34 ? F38 JUP 1280 A 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 333 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 38 #