data_4A4Z # _model_server_result.job_id wKfekHR1O8mWWPoa0dpbeg _model_server_result.datetime_utc '2025-03-12 19:57:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4a4z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":2288}' # _entry.id 4A4Z # _exptl.entry_id 4A4Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4A4Z _cell.length_a 82.794 _cell.length_b 118.551 _cell.length_c 129.47 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4A4Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 4A4Z _atom_sites.fract_transf_matrix[1][1] 0.012078 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008435 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007724 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ANP A 1 2288 2288 ANP ANP . C 3 EDO A 1 2289 2289 EDO EDO . D 3 EDO A 1 2290 2290 EDO EDO . E 3 EDO A 1 2291 2291 EDO EDO . F 3 EDO A 1 2292 2292 EDO EDO . G 4 HOH A 1 2001 2001 HOH HOH . G 4 HOH A 2 2002 2002 HOH HOH . G 4 HOH A 3 2003 2003 HOH HOH . G 4 HOH A 4 2004 2004 HOH HOH . G 4 HOH A 5 2005 2005 HOH HOH . G 4 HOH A 6 2006 2006 HOH HOH . G 4 HOH A 7 2007 2007 HOH HOH . G 4 HOH A 8 2008 2008 HOH HOH . G 4 HOH A 9 2009 2009 HOH HOH . G 4 HOH A 10 2010 2010 HOH HOH . G 4 HOH A 11 2011 2011 HOH HOH . G 4 HOH A 12 2012 2012 HOH HOH . G 4 HOH A 13 2013 2013 HOH HOH . G 4 HOH A 14 2014 2014 HOH HOH . G 4 HOH A 15 2015 2015 HOH HOH . G 4 HOH A 16 2016 2016 HOH HOH . G 4 HOH A 17 2017 2017 HOH HOH . G 4 HOH A 18 2018 2018 HOH HOH . G 4 HOH A 19 2019 2019 HOH HOH . G 4 HOH A 20 2020 2020 HOH HOH . G 4 HOH A 21 2021 2021 HOH HOH . G 4 HOH A 22 2022 2022 HOH HOH . G 4 HOH A 23 2023 2023 HOH HOH . G 4 HOH A 24 2024 2024 HOH HOH . G 4 HOH A 25 2025 2025 HOH HOH . G 4 HOH A 26 2026 2026 HOH HOH . G 4 HOH A 27 2027 2027 HOH HOH . G 4 HOH A 28 2028 2028 HOH HOH . G 4 HOH A 29 2029 2029 HOH HOH . G 4 HOH A 30 2030 2030 HOH HOH . G 4 HOH A 31 2031 2031 HOH HOH . G 4 HOH A 32 2032 2032 HOH HOH . G 4 HOH A 33 2033 2033 HOH HOH . G 4 HOH A 34 2034 2034 HOH HOH . G 4 HOH A 35 2035 2035 HOH HOH . G 4 HOH A 36 2036 2036 HOH HOH . G 4 HOH A 37 2037 2037 HOH HOH . G 4 HOH A 38 2038 2038 HOH HOH . G 4 HOH A 39 2039 2039 HOH HOH . G 4 HOH A 40 2040 2040 HOH HOH . G 4 HOH A 41 2041 2041 HOH HOH . G 4 HOH A 42 2042 2042 HOH HOH . G 4 HOH A 43 2043 2043 HOH HOH . G 4 HOH A 44 2044 2044 HOH HOH . G 4 HOH A 45 2045 2045 HOH HOH . G 4 HOH A 46 2046 2046 HOH HOH . G 4 HOH A 47 2047 2047 HOH HOH . G 4 HOH A 48 2048 2048 HOH HOH . G 4 HOH A 49 2049 2049 HOH HOH . G 4 HOH A 50 2050 2050 HOH HOH . G 4 HOH A 51 2051 2051 HOH HOH . G 4 HOH A 52 2052 2052 HOH HOH . G 4 HOH A 53 2053 2053 HOH HOH . G 4 HOH A 54 2054 2054 HOH HOH . G 4 HOH A 55 2055 2055 HOH HOH . G 4 HOH A 56 2056 2056 HOH HOH . G 4 HOH A 57 2057 2057 HOH HOH . G 4 HOH A 58 2058 2058 HOH HOH . G 4 HOH A 59 2059 2059 HOH HOH . G 4 HOH A 60 2060 2060 HOH HOH . G 4 HOH A 61 2061 2061 HOH HOH . G 4 HOH A 62 2062 2062 HOH HOH . G 4 HOH A 63 2063 2063 HOH HOH . G 4 HOH A 64 2064 2064 HOH HOH . G 4 HOH A 65 2065 2065 HOH HOH . G 4 HOH A 66 2066 2066 HOH HOH . G 4 HOH A 67 2067 2067 HOH HOH . G 4 HOH A 68 2068 2068 HOH HOH . G 4 HOH A 69 2069 2069 HOH HOH . G 4 HOH A 70 2070 2070 HOH HOH . G 4 HOH A 71 2071 2071 HOH HOH . G 4 HOH A 72 2072 2072 HOH HOH . G 4 HOH A 73 2073 2073 HOH HOH . G 4 HOH A 74 2074 2074 HOH HOH . G 4 HOH A 75 2075 2075 HOH HOH . G 4 HOH A 76 2076 2076 HOH HOH . G 4 HOH A 77 2077 2077 HOH HOH . G 4 HOH A 78 2078 2078 HOH HOH . G 4 HOH A 79 2079 2079 HOH HOH . G 4 HOH A 80 2080 2080 HOH HOH . G 4 HOH A 81 2081 2081 HOH HOH . G 4 HOH A 82 2082 2082 HOH HOH . G 4 HOH A 83 2083 2083 HOH HOH . G 4 HOH A 84 2084 2084 HOH HOH . G 4 HOH A 85 2085 2085 HOH HOH . G 4 HOH A 86 2086 2086 HOH HOH . G 4 HOH A 87 2087 2087 HOH HOH . G 4 HOH A 88 2088 2088 HOH HOH . G 4 HOH A 89 2089 2089 HOH HOH . G 4 HOH A 90 2090 2090 HOH HOH . G 4 HOH A 91 2091 2091 HOH HOH . G 4 HOH A 92 2092 2092 HOH HOH . G 4 HOH A 93 2093 2093 HOH HOH . G 4 HOH A 94 2094 2094 HOH HOH . G 4 HOH A 95 2095 2095 HOH HOH . G 4 HOH A 96 2096 2096 HOH HOH . G 4 HOH A 97 2097 2097 HOH HOH . G 4 HOH A 98 2098 2098 HOH HOH . G 4 HOH A 99 2099 2099 HOH HOH . G 4 HOH A 100 2100 2100 HOH HOH . G 4 HOH A 101 2101 2101 HOH HOH . G 4 HOH A 102 2102 2102 HOH HOH . G 4 HOH A 103 2103 2103 HOH HOH . G 4 HOH A 104 2104 2104 HOH HOH . G 4 HOH A 105 2105 2105 HOH HOH . G 4 HOH A 106 2106 2106 HOH HOH . G 4 HOH A 107 2107 2107 HOH HOH . G 4 HOH A 108 2108 2108 HOH HOH . G 4 HOH A 109 2109 2109 HOH HOH . G 4 HOH A 110 2110 2110 HOH HOH . G 4 HOH A 111 2111 2111 HOH HOH . G 4 HOH A 112 2112 2112 HOH HOH . G 4 HOH A 113 2113 2113 HOH HOH . G 4 HOH A 114 2114 2114 HOH HOH . G 4 HOH A 115 2115 2115 HOH HOH . G 4 HOH A 116 2116 2116 HOH HOH . G 4 HOH A 117 2117 2117 HOH HOH . G 4 HOH A 118 2118 2118 HOH HOH . G 4 HOH A 119 2119 2119 HOH HOH . G 4 HOH A 120 2120 2120 HOH HOH . G 4 HOH A 121 2121 2121 HOH HOH . G 4 HOH A 122 2122 2122 HOH HOH . G 4 HOH A 123 2123 2123 HOH HOH . G 4 HOH A 124 2124 2124 HOH HOH . G 4 HOH A 125 2125 2125 HOH HOH . G 4 HOH A 126 2126 2126 HOH HOH . G 4 HOH A 127 2127 2127 HOH HOH . G 4 HOH A 128 2128 2128 HOH HOH . G 4 HOH A 129 2129 2129 HOH HOH . G 4 HOH A 130 2130 2130 HOH HOH . G 4 HOH A 131 2131 2131 HOH HOH . G 4 HOH A 132 2132 2132 HOH HOH . G 4 HOH A 133 2133 2133 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . B 2 66.076 17.429 45.024 0.28 81.7 ? PG ANP 2288 A 1 HETATM 2 O O1G ANP . . . B 2 67.22 17.463 45.976 0.36 82.21 ? O1G ANP 2288 A 1 HETATM 3 O O2G ANP . . . B 2 66.534 18.227 43.845 0.39 80.93 ? O2G ANP 2288 A 1 HETATM 4 O O3G ANP . . . B 2 66.089 16.024 44.521 1 82.73 ? O3G ANP 2288 A 1 HETATM 5 P PB ANP . . . B 2 64.374 19.565 45.484 1 79.04 ? PB ANP 2288 A 1 HETATM 6 O O1B ANP . . . B 2 64.794 20.027 44.123 1 79.44 ? O1B ANP 2288 A 1 HETATM 7 O O2B ANP . . . B 2 65.285 20.361 46.37 1 79.66 ? O2B ANP 2288 A 1 HETATM 8 N N3B ANP . . . B 2 64.627 17.927 45.665 1 75.62 ? N3B ANP 2288 A 1 HETATM 9 P PA ANP . . . B 2 62.229 19.711 47.143 1 84.05 ? PA ANP 2288 A 1 HETATM 10 O O1A ANP . . . B 2 60.723 19.652 47.113 1 84.36 ? O1A ANP 2288 A 1 HETATM 11 O O2A ANP . . . B 2 62.601 18.319 47.556 1 81.76 ? O2A ANP 2288 A 1 HETATM 12 O O3A ANP . . . B 2 62.87 19.972 45.739 1 79.03 ? O3A ANP 2288 A 1 HETATM 13 O O5' ANP . . . B 2 62.691 20.798 48.199 1 83.68 ? O5' ANP 2288 A 1 HETATM 14 C C5' ANP . . . B 2 61.951 21.977 48.313 1 83.65 ? C5' ANP 2288 A 1 HETATM 15 C C4' ANP . . . B 2 61.938 22.434 49.761 1 83.95 ? C4' ANP 2288 A 1 HETATM 16 O O4' ANP . . . B 2 61.922 23.833 49.822 1 83.18 ? O4' ANP 2288 A 1 HETATM 17 C C3' ANP . . . B 2 60.738 21.944 50.486 1 85.94 ? C3' ANP 2288 A 1 HETATM 18 O O3' ANP . . . B 2 61.003 21.771 51.822 1 87.66 ? O3' ANP 2288 A 1 HETATM 19 C C2' ANP . . . B 2 59.758 23.027 50.28 1 84.71 ? C2' ANP 2288 A 1 HETATM 20 O O2' ANP . . . B 2 58.982 23.191 51.408 1 85.52 ? O2' ANP 2288 A 1 HETATM 21 C C1' ANP . . . B 2 60.588 24.223 50.03 1 83.66 ? C1' ANP 2288 A 1 HETATM 22 N N9 ANP . . . B 2 60.119 24.972 48.871 1 83.03 ? N9 ANP 2288 A 1 HETATM 23 C C8 ANP . . . B 2 59.709 24.444 47.653 1 82.76 ? C8 ANP 2288 A 1 HETATM 24 N N7 ANP . . . B 2 59.354 25.488 46.845 1 82.11 ? N7 ANP 2288 A 1 HETATM 25 C C5 ANP . . . B 2 59.541 26.693 47.548 1 82.34 ? C5 ANP 2288 A 1 HETATM 26 C C6 ANP . . . B 2 59.346 28.042 47.226 1 80.86 ? C6 ANP 2288 A 1 HETATM 27 N N6 ANP . . . B 2 58.849 28.425 45.922 1 78.77 ? N6 ANP 2288 A 1 HETATM 28 N N1 ANP . . . B 2 59.632 28.983 48.16 1 82.3 ? N1 ANP 2288 A 1 HETATM 29 C C2 ANP . . . B 2 60.096 28.637 49.378 1 83.55 ? C2 ANP 2288 A 1 HETATM 30 N N3 ANP . . . B 2 60.294 27.337 49.717 1 83.69 ? N3 ANP 2288 A 1 HETATM 31 C C4 ANP . . . B 2 60.029 26.363 48.837 1 83.17 ? C4 ANP 2288 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 31 #