data_4A50
#
_model_server_result.job_id            kZAqWJbyuI6wubYx430G2Q 
_model_server_result.datetime_utc      '2024-10-13 14:22:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4a50 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":600}' 
#
_entry.id    4A50 
#
_exptl.entry_id    4A50 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4A50 
_cell.length_a            158.54 
_cell.length_b            158.54 
_cell.length_c            158.54 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4A50 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        199 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'I 21 3' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG1 THR 112 A THR 112 1_555 C MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.546 ? 
metalc ? metalc2 B O3B ADP . A ADP 600 1_555 C MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? 
metalc ? metalc3 C MG MG . A MG 601 1_555 F O HOH . A HOH 2011 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.893 ? 
metalc ? metalc4 C MG MG . A MG 601 1_555 F O HOH . A HOH 2012 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
metalc ? metalc5 C MG MG . A MG 601 1_555 F O HOH . A HOH 2013 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? 
metalc ? metalc6 C MG MG . A MG 601 1_555 F O HOH . A HOH 2024 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.97 ? 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     4A50 
_atom_sites.fract_transf_matrix[1][1]    0.006308 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006308 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006308 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ADP A 1 600 600 ADP ADP . 
C 3 MG A 1 601 601 MG MG . 
D 4 DQ6 A 1 1367 1367 DQ6 DQ6 . 
E 5 DQ7 A 1 1368 1368 DQ7 DQ7 . 
F 6 HOH A 1 2001 2001 HOH HOH . 
F 6 HOH A 2 2002 2002 HOH HOH . 
F 6 HOH A 3 2003 2003 HOH HOH . 
F 6 HOH A 4 2004 2004 HOH HOH . 
F 6 HOH A 5 2005 2005 HOH HOH . 
F 6 HOH A 6 2006 2006 HOH HOH . 
F 6 HOH A 7 2007 2007 HOH HOH . 
F 6 HOH A 8 2008 2008 HOH HOH . 
F 6 HOH A 9 2009 2009 HOH HOH . 
F 6 HOH A 10 2010 2010 HOH HOH . 
F 6 HOH A 11 2011 2011 HOH HOH . 
F 6 HOH A 12 2012 2012 HOH HOH . 
F 6 HOH A 13 2013 2013 HOH HOH . 
F 6 HOH A 14 2014 2014 HOH HOH . 
F 6 HOH A 15 2015 2015 HOH HOH . 
F 6 HOH A 16 2016 2016 HOH HOH . 
F 6 HOH A 17 2017 2017 HOH HOH . 
F 6 HOH A 18 2018 2018 HOH HOH . 
F 6 HOH A 19 2019 2019 HOH HOH . 
F 6 HOH A 20 2020 2020 HOH HOH . 
F 6 HOH A 21 2021 2021 HOH HOH . 
F 6 HOH A 22 2022 2022 HOH HOH . 
F 6 HOH A 23 2023 2023 HOH HOH . 
F 6 HOH A 24 2024 2024 HOH HOH . 
F 6 HOH A 25 2025 2025 HOH HOH . 
F 6 HOH A 26 2026 2026 HOH HOH . 
F 6 HOH A 27 2027 2027 HOH HOH . 
F 6 HOH A 28 2028 2028 HOH HOH . 
F 6 HOH A 29 2029 2029 HOH HOH . 
F 6 HOH A 30 2030 2030 HOH HOH . 
F 6 HOH A 31 2031 2031 HOH HOH . 
F 6 HOH A 32 2032 2032 HOH HOH . 
F 6 HOH A 33 2033 2033 HOH HOH . 
F 6 HOH A 34 2034 2034 HOH HOH . 
F 6 HOH A 35 2035 2035 HOH HOH . 
F 6 HOH A 36 2036 2036 HOH HOH . 
F 6 HOH A 37 2037 2037 HOH HOH . 
F 6 HOH A 38 2038 2038 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . B 2 8.411 14.099 -13.066 1 51.07 ? PB ADP 600 A 1 
HETATM 2 O O1B ADP . . . B 2 7.83 13.394 -11.873 1 49.26 ? O1B ADP 600 A 1 
HETATM 3 O O2B ADP . . . B 2 8.764 15.52 -12.809 1 50.01 ? O2B ADP 600 A 1 
HETATM 4 O O3B ADP . . . B 2 9.412 13.252 -13.807 1 48.08 ? O3B ADP 600 A 1 
HETATM 5 P PA ADP . . . B 2 6.858 13.321 -15.277 1 49.91 ? PA ADP 600 A 1 
HETATM 6 O O1A ADP . . . B 2 7.842 13.7 -16.35 1 52.56 ? O1A ADP 600 A 1 
HETATM 7 O O2A ADP . . . B 2 6.873 11.898 -14.812 1 42.29 ? O2A ADP 600 A 1 
HETATM 8 O O3A ADP . . . B 2 7.185 14.341 -14.074 1 48.17 ? O3A ADP 600 A 1 
HETATM 9 O O5' ADP . . . B 2 5.359 13.676 -15.755 1 45.93 ? O5' ADP 600 A 1 
HETATM 10 C C5' ADP . . . B 2 4.306 13.174 -14.947 1 48.11 ? C5' ADP 600 A 1 
HETATM 11 C C4' ADP . . . B 2 3.069 12.906 -15.789 1 55.73 ? C4' ADP 600 A 1 
HETATM 12 O O4' ADP . . . B 2 2.472 14.099 -16.311 1 58.59 ? O4' ADP 600 A 1 
HETATM 13 C C3' ADP . . . B 2 3.334 12.012 -16.992 1 58.54 ? C3' ADP 600 A 1 
HETATM 14 O O3' ADP . . . B 2 2.167 11.194 -17.191 1 61.28 ? O3' ADP 600 A 1 
HETATM 15 C C2' ADP . . . B 2 3.425 12.996 -18.13 1 58.5 ? C2' ADP 600 A 1 
HETATM 16 O O2' ADP . . . B 2 2.965 12.404 -19.342 1 61.19 ? O2' ADP 600 A 1 
HETATM 17 C C1' ADP . . . B 2 2.475 14.106 -17.735 1 56.43 ? C1' ADP 600 A 1 
HETATM 18 N N9 ADP . . . B 2 3.108 15.349 -18.214 1 54.22 ? N9 ADP 600 A 1 
HETATM 19 C C8 ADP . . . B 2 4.164 15.931 -17.623 1 53.89 ? C8 ADP 600 A 1 
HETATM 20 N N7 ADP . . . B 2 4.545 17.047 -18.291 1 54.73 ? N7 ADP 600 A 1 
HETATM 21 C C5 ADP . . . B 2 3.731 17.15 -19.352 1 54.89 ? C5 ADP 600 A 1 
HETATM 22 C C6 ADP . . . B 2 3.588 18.114 -20.453 1 55.37 ? C6 ADP 600 A 1 
HETATM 23 N N6 ADP . . . B 2 4.45 19.143 -20.492 1 56.93 ? N6 ADP 600 A 1 
HETATM 24 N N1 ADP . . . B 2 2.594 17.916 -21.353 1 58.58 ? N1 ADP 600 A 1 
HETATM 25 C C2 ADP . . . B 2 1.763 16.847 -21.267 1 56.46 ? C2 ADP 600 A 1 
HETATM 26 N N3 ADP . . . B 2 1.821 15.92 -20.292 1 53.79 ? N3 ADP 600 A 1 
HETATM 27 C C4 ADP . . . B 2 2.763 16.03 -19.309 1 54.8 ? C4 ADP 600 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           280 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           27 
#