data_4A52 # _model_server_result.job_id G7SE6Lx2v3-r3FpJl-CUOQ _model_server_result.datetime_utc '2024-11-22 13:40:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4a52 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1142}' # _entry.id 4A52 # _exptl.entry_id 4A52 _exptl.method 'SOLUTION NMR' # _entity.details ? _entity.formula_weight 301.362 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(5R)-5-[(1S,2R)-1-formyl-2-hydroxypropyl]-3-[(2-{[(E)-iminomethyl]amino}ethyl)sulfanyl]-4,5-dihydro-1H-pyrrole-2-carbox ylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4A52 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4A52 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 142 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 142 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C7 _struct_conn.ptnr2_label_comp_id IM2 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id IM2 _struct_conn.ptnr2_auth_seq_id 1142 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.751 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C12 H19 N3 O4 S' _chem_comp.formula_weight 301.362 _chem_comp.id IM2 _chem_comp.mon_nstd_flag . _chem_comp.name '(5R)-5-[(1S,2R)-1-formyl-2-hydroxypropyl]-3-[(2-{[(E)-iminomethyl]amino}ethyl)sulfanyl]-4,5-dihydro-1H-pyrrole-2-carbox ylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'IMIPENEM, open form;N-FORMIMIDOYL-THIENAMYCINE, open form' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C7 C6 IM2 sing 171 n n C7 O7 IM2 doub 172 n n C7 H71 IM2 sing 173 n n C2 C3 IM2 doub 174 n n C2 S21 IM2 sing 175 n n C2 C1 IM2 sing 176 n n C6 C5 IM2 sing 177 n n C6 C61 IM2 sing 178 n n C6 H61A IM2 sing 179 n n C5 N4 IM2 sing 180 n n C5 C1 IM2 sing 181 n n C5 H51 IM2 sing 182 n n C3 N4 IM2 sing 183 n n C3 C31 IM2 sing 184 n n C61 O62 IM2 sing 185 n n C61 C62 IM2 sing 186 n n C61 H61 IM2 sing 187 n n O62 HO6 IM2 sing 188 n n C62 H621 IM2 sing 189 n n C62 H622 IM2 sing 190 n n C62 H623 IM2 sing 191 n n N4 H41 IM2 sing 192 n n C31 O31 IM2 doub 193 n n C31 O32 IM2 sing 194 n n O32 H321 IM2 sing 195 n n S21 C22 IM2 sing 196 n n C22 C23 IM2 sing 197 n n C22 H221 IM2 sing 198 n n C22 H222 IM2 sing 199 n n C23 N24 IM2 sing 200 n n C23 H231 IM2 sing 201 n n C23 H232 IM2 sing 202 n n N24 C25 IM2 sing 203 n n N24 H241 IM2 sing 204 n n C25 N26 IM2 doub 205 n n C25 H25 IM2 sing 206 n n N26 H26 IM2 sing 207 n n C1 H11 IM2 sing 208 n n C1 H12 IM2 sing 209 n n # _atom_sites.entry_id 4A52 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id IM2 _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 1142 _pdbx_nonpoly_scheme.auth_seq_num 1142 _pdbx_nonpoly_scheme.pdb_mon_id IM2 _pdbx_nonpoly_scheme.auth_mon_id IM2 _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C7 IM2 . . . B 2 -10.311 4.996 9.128 1 2.78 ? C7 IM2 1142 A 1 HETATM 2 C C2 IM2 . . . B 2 -6.92 5.625 11.778 1 4.5 ? C2 IM2 1142 A 1 HETATM 3 C C6 IM2 . . . B 2 -10.297 5.549 10.553 1 3.22 ? C6 IM2 1142 A 1 HETATM 4 C C5 IM2 . . . B 2 -8.904 6.108 10.868 1 3.69 ? C5 IM2 1142 A 1 HETATM 5 C C3 IM2 . . . B 2 -7.5 6.642 12.439 1 4.68 ? C3 IM2 1142 A 1 HETATM 6 O O7 IM2 . . . B 2 -11.025 4.042 8.829 1 3.31 ? O7 IM2 1142 A 1 HETATM 7 C C61 IM2 . . . B 2 -11.364 6.659 10.689 1 4 ? C61 IM2 1142 A 1 HETATM 8 O O62 IM2 . . . B 2 -11.326 7.228 12.002 1 4.54 ? O62 IM2 1142 A 1 HETATM 9 C C62 IM2 . . . B 2 -12.761 6.112 10.422 1 4.66 ? C62 IM2 1142 A 1 HETATM 10 N N4 IM2 . . . B 2 -8.81 6.716 12.203 1 4.41 ? N4 IM2 1142 A 1 HETATM 11 C C31 IM2 . . . B 2 -6.804 7.477 13.212 1 5.41 ? C31 IM2 1142 A 1 HETATM 12 O O31 IM2 . . . B 2 -7.25 8.593 13.487 1 5.81 ? O31 IM2 1142 A 1 HETATM 13 O O32 IM2 . . . B 2 -5.607 7.013 13.651 1 5.97 ? O32 IM2 1142 A 1 HETATM 14 S S21 IM2 . . . B 2 -5.22 5.195 11.816 1 5.31 ? S21 IM2 1142 A 1 HETATM 15 C C22 IM2 . . . B 2 -5.339 3.457 12.335 1 5.89 ? C22 IM2 1142 A 1 HETATM 16 C C23 IM2 . . . B 2 -4.061 2.682 12.424 1 6.91 ? C23 IM2 1142 A 1 HETATM 17 N N24 IM2 . . . B 2 -3.398 2.567 11.128 1 7.51 ? N24 IM2 1142 A 1 HETATM 18 C C25 IM2 . . . B 2 -2.288 1.843 11.259 1 8.19 ? C25 IM2 1142 A 1 HETATM 19 N N26 IM2 . . . B 2 -1.285 2.282 12.032 1 8.5 ? N26 IM2 1142 A 1 HETATM 20 C C1 IM2 . . . B 2 -7.865 5.014 10.97 1 4.01 ? C1 IM2 1142 A 1 HETATM 21 H H61A IM2 . . . B 2 -10.54 4.755 11.243 1 3.22 ? H61A IM2 1142 A 1 HETATM 22 H H51 IM2 . . . B 2 -8.602 6.822 10.105 1 3.9 ? H51 IM2 1142 A 1 HETATM 23 H H61 IM2 . . . B 2 -11.153 7.431 9.963 1 4.26 ? H61 IM2 1142 A 1 HETATM 24 H HO6 IM2 . . . B 2 -11.501 6.545 12.653 1 4.78 ? HO6 IM2 1142 A 1 HETATM 25 H H621 IM2 . . . B 2 -12.802 5.702 9.424 1 5 ? H621 IM2 1142 A 1 HETATM 26 H H622 IM2 . . . B 2 -13.484 6.909 10.515 1 5.15 ? H622 IM2 1142 A 1 HETATM 27 H H623 IM2 . . . B 2 -12.985 5.335 11.139 1 4.76 ? H623 IM2 1142 A 1 HETATM 28 H H41 IM2 . . . B 2 -9.105 7.671 12.159 1 4.89 ? H41 IM2 1142 A 1 HETATM 29 H H321 IM2 . . . B 2 -5.15 7.724 14.185 1 6.36 ? H321 IM2 1142 A 1 HETATM 30 H H221 IM2 . . . B 2 -5.59 3.412 13.333 1 5.78 ? H221 IM2 1142 A 1 HETATM 31 H H222 IM2 . . . B 2 -6.127 2.976 11.67 1 6 ? H222 IM2 1142 A 1 HETATM 32 H H231 IM2 . . . B 2 -4.281 1.692 12.794 1 7.13 ? H231 IM2 1142 A 1 HETATM 33 H H232 IM2 . . . B 2 -3.399 3.185 13.113 1 7.3 ? H232 IM2 1142 A 1 HETATM 34 H H241 IM2 . . . B 2 -3.92 2.224 10.373 1 7.75 ? H241 IM2 1142 A 1 HETATM 35 H H25 IM2 . . . B 2 -2.193 0.892 10.733 1 8.69 ? H25 IM2 1142 A 1 HETATM 36 H H26 IM2 . . . B 2 -0.434 1.776 12.158 1 9.14 ? H26 IM2 1142 A 1 HETATM 37 H H11 IM2 . . . B 2 -7.443 4.778 9.995 1 4.25 ? H11 IM2 1142 A 1 HETATM 38 H H12 IM2 . . . B 2 -8.28 4.125 11.449 1 4.13 ? H12 IM2 1142 A 1 # _model_server_stats.io_time_ms 107 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 76 _model_server_stats.query_time_ms 5766 _model_server_stats.encode_time_ms 29 _model_server_stats.element_count 38 #