data_4A5A # _model_server_result.job_id Bz3wGnHbLGlwl-9AbX0Kng _model_server_result.datetime_utc '2024-10-31 16:19:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4a5a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":700}' # _entry.id 4A5A # _exptl.entry_id 4A5A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4A5A _cell.length_a 71.953 _cell.length_b 150.668 _cell.length_c 486.988 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4A5A _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H 1 1,2 C,D,I,J,K,L 2 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 3 'crystal symmetry operation' 3_654 -x+1,y,-z-1/2 -1 0 0 0 1 0 0 0 -1 71.953 0 -243.494 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 I N N ? 2 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 35 A CYS 59 1_555 A SG CYS 64 A CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf2 A SG CYS 317 A CYS 341 1_555 A SG CYS 328 A CYS 352 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf3 A SG CYS 332 A CYS 356 1_555 A SG CYS 421 A CYS 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf4 A SG CYS 341 A CYS 365 1_555 A SG CYS 409 A CYS 433 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf5 A SG CYS 372 A CYS 396 1_555 A SG CYS 389 A CYS 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? disulf ? disulf6 A SG CYS 502 A CYS 526 1_555 A SG CYS 534 A CYS 558 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf7 B SG CYS 35 B CYS 59 1_555 B SG CYS 64 B CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf8 B SG CYS 317 B CYS 341 1_555 B SG CYS 328 B CYS 352 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? disulf ? disulf9 B SG CYS 332 B CYS 356 1_555 B SG CYS 421 B CYS 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf10 B SG CYS 341 B CYS 365 1_555 B SG CYS 409 B CYS 433 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? disulf ? disulf11 B SG CYS 372 B CYS 396 1_555 B SG CYS 389 B CYS 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf12 B SG CYS 502 B CYS 526 1_555 B SG CYS 534 B CYS 558 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf13 C SG CYS 35 C CYS 59 1_555 C SG CYS 64 C CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf14 C SG CYS 317 C CYS 341 1_555 C SG CYS 328 C CYS 352 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf15 C SG CYS 332 C CYS 356 1_555 C SG CYS 421 C CYS 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf16 C SG CYS 341 C CYS 365 1_555 C SG CYS 409 C CYS 433 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf17 C SG CYS 372 C CYS 396 1_555 C SG CYS 389 C CYS 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf18 C SG CYS 502 C CYS 526 1_555 C SG CYS 534 C CYS 558 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf19 D SG CYS 35 D CYS 59 1_555 D SG CYS 64 D CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.981 ? disulf ? disulf20 D SG CYS 317 D CYS 341 1_555 D SG CYS 328 D CYS 352 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? disulf ? disulf21 D SG CYS 332 D CYS 356 1_555 D SG CYS 421 D CYS 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf22 D SG CYS 341 D CYS 365 1_555 D SG CYS 409 D CYS 433 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf23 D SG CYS 372 D CYS 396 1_555 D SG CYS 389 D CYS 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? disulf ? disulf24 D SG CYS 502 D CYS 526 1_555 D SG CYS 534 D CYS 558 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc1 E O2B ANP . A ANP 700 1_555 F MG MG . A MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? metalc ? metalc2 E O2G ANP . A ANP 700 1_555 F MG MG . A MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.967 ? metalc ? metalc3 G O2B ANP . B ANP 700 1_555 H MG MG . B MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? metalc ? metalc4 G O2G ANP . B ANP 700 1_555 H MG MG . B MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.933 ? metalc ? metalc5 I O2G ANP . C ANP 700 1_555 J MG MG . C MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? metalc ? metalc6 I O2B ANP . C ANP 700 1_555 J MG MG . C MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc7 K O2G ANP . D ANP 700 1_555 L MG MG . D MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? metalc ? metalc8 K O2B ANP . D ANP 700 1_555 L MG MG . D MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 4A5A _atom_sites.fract_transf_matrix[1][1] 0.013898 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006637 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002053 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 ANP A 1 700 700 ANP ANP . F 3 MG A 1 701 701 MG MG . G 2 ANP B 1 700 700 ANP ANP . H 3 MG B 1 701 701 MG MG . I 2 ANP C 1 700 700 ANP ANP . J 3 MG C 1 701 701 MG MG . K 2 ANP D 1 700 700 ANP ANP . L 3 MG D 1 701 701 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . E 2 47.44 9.594 -35.538 1 53.05 ? PG ANP 700 A 1 HETATM 2 O O1G ANP . . . E 2 46.89 8.387 -36.235 1 52.75 ? O1G ANP 700 A 1 HETATM 3 O O2G ANP . . . E 2 46.873 9.774 -34.139 1 58.61 ? O2G ANP 700 A 1 HETATM 4 O O3G ANP . . . E 2 48.945 9.666 -35.625 1 54.29 ? O3G ANP 700 A 1 HETATM 5 P PB ANP . . . E 2 46.113 12.379 -35.81 1 47.84 ? PB ANP 700 A 1 HETATM 6 O O1B ANP . . . E 2 46.896 13.615 -36.159 1 47.6 ? O1B ANP 700 A 1 HETATM 7 O O2B ANP . . . E 2 45.843 12.089 -34.354 1 52.59 ? O2B ANP 700 A 1 HETATM 8 N N3B ANP . . . E 2 46.928 10.977 -36.484 1 51.32 ? N3B ANP 700 A 1 HETATM 9 P PA ANP . . . E 2 43.32 12.833 -35.93 1 56.15 ? PA ANP 700 A 1 HETATM 10 O O1A ANP . . . E 2 43.19 14.335 -35.739 1 56.49 ? O1A ANP 700 A 1 HETATM 11 O O2A ANP . . . E 2 43.153 11.847 -34.799 1 57.99 ? O2A ANP 700 A 1 HETATM 12 O O3A ANP . . . E 2 44.742 12.575 -36.623 1 51.77 ? O3A ANP 700 A 1 HETATM 13 O O5' ANP . . . E 2 42.237 12.358 -37.018 1 59 ? O5' ANP 700 A 1 HETATM 14 C C5' ANP . . . E 2 41.566 13.301 -37.854 1 66.23 ? C5' ANP 700 A 1 HETATM 15 C C4' ANP . . . E 2 41.729 12.928 -39.328 1 68 ? C4' ANP 700 A 1 HETATM 16 O O4' ANP . . . E 2 40.456 12.561 -39.878 1 68.77 ? O4' ANP 700 A 1 HETATM 17 C C3' ANP . . . E 2 42.244 14.11 -40.134 1 68.47 ? C3' ANP 700 A 1 HETATM 18 O O3' ANP . . . E 2 43.258 13.666 -41.041 1 66.35 ? O3' ANP 700 A 1 HETATM 19 C C2' ANP . . . E 2 41.02 14.659 -40.853 1 71.07 ? C2' ANP 700 A 1 HETATM 20 O O2' ANP . . . E 2 41.326 14.992 -42.208 1 69.61 ? O2' ANP 700 A 1 HETATM 21 C C1' ANP . . . E 2 39.962 13.562 -40.772 1 71.67 ? C1' ANP 700 A 1 HETATM 22 N N9 ANP . . . E 2 38.658 14.038 -40.241 1 76.33 ? N9 ANP 700 A 1 HETATM 23 C C8 ANP . . . E 2 38.43 14.648 -39.054 1 77.28 ? C8 ANP 700 A 1 HETATM 24 N N7 ANP . . . E 2 37.104 14.922 -38.886 1 76.23 ? N7 ANP 700 A 1 HETATM 25 C C5 ANP . . . E 2 36.456 14.48 -39.981 1 75.29 ? C5 ANP 700 A 1 HETATM 26 C C6 ANP . . . E 2 35.055 14.447 -40.469 1 75.65 ? C6 ANP 700 A 1 HETATM 27 N N6 ANP . . . E 2 34.034 14.958 -39.745 1 79.88 ? N6 ANP 700 A 1 HETATM 28 N N1 ANP . . . E 2 34.815 13.884 -41.675 1 76.06 ? N1 ANP 700 A 1 HETATM 29 C C2 ANP . . . E 2 35.803 13.365 -42.428 1 75.71 ? C2 ANP 700 A 1 HETATM 30 N N3 ANP . . . E 2 37.097 13.36 -42.054 1 77.19 ? N3 ANP 700 A 1 HETATM 31 C C4 ANP . . . E 2 37.484 13.893 -40.866 1 78 ? C4 ANP 700 A 1 # _model_server_stats.io_time_ms 39 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 31 #