data_4A5A # _model_server_result.job_id 5cz5_FijwOtGe6uW4zLfTQ _model_server_result.datetime_utc '2024-11-23 13:51:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4a5a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":700}' # _entry.id 4A5A # _exptl.entry_id 4A5A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4A5A _cell.length_a 71.953 _cell.length_b 150.668 _cell.length_c 486.988 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4A5A _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H 1 1,2 C,D,I,J,K,L 2 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 3 'crystal symmetry operation' 3_654 -x+1,y,-z-1/2 -1 0 0 0 1 0 0 0 -1 71.953 0 -243.494 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 I N N ? 2 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 35 A CYS 59 1_555 A SG CYS 64 A CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf2 A SG CYS 317 A CYS 341 1_555 A SG CYS 328 A CYS 352 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf3 A SG CYS 332 A CYS 356 1_555 A SG CYS 421 A CYS 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf4 A SG CYS 341 A CYS 365 1_555 A SG CYS 409 A CYS 433 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf5 A SG CYS 372 A CYS 396 1_555 A SG CYS 389 A CYS 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? disulf ? disulf6 A SG CYS 502 A CYS 526 1_555 A SG CYS 534 A CYS 558 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf7 B SG CYS 35 B CYS 59 1_555 B SG CYS 64 B CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf8 B SG CYS 317 B CYS 341 1_555 B SG CYS 328 B CYS 352 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? disulf ? disulf9 B SG CYS 332 B CYS 356 1_555 B SG CYS 421 B CYS 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf10 B SG CYS 341 B CYS 365 1_555 B SG CYS 409 B CYS 433 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? disulf ? disulf11 B SG CYS 372 B CYS 396 1_555 B SG CYS 389 B CYS 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf12 B SG CYS 502 B CYS 526 1_555 B SG CYS 534 B CYS 558 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf13 C SG CYS 35 C CYS 59 1_555 C SG CYS 64 C CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf14 C SG CYS 317 C CYS 341 1_555 C SG CYS 328 C CYS 352 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf15 C SG CYS 332 C CYS 356 1_555 C SG CYS 421 C CYS 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf16 C SG CYS 341 C CYS 365 1_555 C SG CYS 409 C CYS 433 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf17 C SG CYS 372 C CYS 396 1_555 C SG CYS 389 C CYS 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf18 C SG CYS 502 C CYS 526 1_555 C SG CYS 534 C CYS 558 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf19 D SG CYS 35 D CYS 59 1_555 D SG CYS 64 D CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.981 ? disulf ? disulf20 D SG CYS 317 D CYS 341 1_555 D SG CYS 328 D CYS 352 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? disulf ? disulf21 D SG CYS 332 D CYS 356 1_555 D SG CYS 421 D CYS 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf22 D SG CYS 341 D CYS 365 1_555 D SG CYS 409 D CYS 433 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf23 D SG CYS 372 D CYS 396 1_555 D SG CYS 389 D CYS 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? disulf ? disulf24 D SG CYS 502 D CYS 526 1_555 D SG CYS 534 D CYS 558 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc1 E O2B ANP . A ANP 700 1_555 F MG MG . A MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? metalc ? metalc2 E O2G ANP . A ANP 700 1_555 F MG MG . A MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.967 ? metalc ? metalc3 G O2B ANP . B ANP 700 1_555 H MG MG . B MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? metalc ? metalc4 G O2G ANP . B ANP 700 1_555 H MG MG . B MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.933 ? metalc ? metalc5 I O2G ANP . C ANP 700 1_555 J MG MG . C MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? metalc ? metalc6 I O2B ANP . C ANP 700 1_555 J MG MG . C MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc7 K O2G ANP . D ANP 700 1_555 L MG MG . D MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? metalc ? metalc8 K O2B ANP . D ANP 700 1_555 L MG MG . D MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 4A5A _atom_sites.fract_transf_matrix[1][1] 0.013898 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006637 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002053 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 ANP A 1 700 700 ANP ANP . F 3 MG A 1 701 701 MG MG . G 2 ANP B 1 700 700 ANP ANP . H 3 MG B 1 701 701 MG MG . I 2 ANP C 1 700 700 ANP ANP . J 3 MG C 1 701 701 MG MG . K 2 ANP D 1 700 700 ANP ANP . L 3 MG D 1 701 701 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . G 2 68.134 -24.218 -27.633 1 78.93 ? PG ANP 700 B 1 HETATM 2 O O1G ANP . . . G 2 68.696 -23.455 -28.819 1 79.07 ? O1G ANP 700 B 1 HETATM 3 O O2G ANP . . . G 2 68.701 -23.76 -26.303 1 81.15 ? O2G ANP 700 B 1 HETATM 4 O O3G ANP . . . G 2 66.623 -24.278 -27.642 1 75.25 ? O3G ANP 700 B 1 HETATM 5 P PB ANP . . . G 2 69.489 -26.866 -26.686 1 68.43 ? PB ANP 700 B 1 HETATM 6 O O1B ANP . . . G 2 68.664 -28.099 -26.459 1 60.21 ? O1B ANP 700 B 1 HETATM 7 O O2B ANP . . . G 2 69.821 -25.974 -25.509 1 68.77 ? O2B ANP 700 B 1 HETATM 8 N N3B ANP . . . G 2 68.638 -25.891 -27.878 1 71.68 ? N3B ANP 700 B 1 HETATM 9 P PA ANP . . . G 2 72.343 -27.268 -26.579 1 91.98 ? PA ANP 700 B 1 HETATM 10 O O1A ANP . . . G 2 72.563 -28.533 -25.789 1 88.34 ? O1A ANP 700 B 1 HETATM 11 O O2A ANP . . . G 2 72.471 -25.898 -25.941 1 93.66 ? O2A ANP 700 B 1 HETATM 12 O O3A ANP . . . G 2 70.894 -27.369 -27.319 1 79.73 ? O3A ANP 700 B 1 HETATM 13 O O5' ANP . . . G 2 73.439 -27.271 -27.763 1 96.44 ? O5' ANP 700 B 1 HETATM 14 C C5' ANP . . . G 2 74.146 -28.45 -28.126 1 94.02 ? C5' ANP 700 B 1 HETATM 15 C C4' ANP . . . G 2 73.941 -28.724 -29.614 1 95.98 ? C4' ANP 700 B 1 HETATM 16 O O4' ANP . . . G 2 75.192 -28.578 -30.288 1 91.39 ? O4' ANP 700 B 1 HETATM 17 C C3' ANP . . . G 2 73.448 -30.148 -29.847 1 95.51 ? C3' ANP 700 B 1 HETATM 18 O O3' ANP . . . G 2 72.416 -30.179 -30.851 1 96.35 ? O3' ANP 700 B 1 HETATM 19 C C2' ANP . . . G 2 74.69 -30.912 -30.272 1 91.41 ? C2' ANP 700 B 1 HETATM 20 O O2' ANP . . . G 2 74.39 -31.784 -31.363 1 90.32 ? O2' ANP 700 B 1 HETATM 21 C C1' ANP . . . G 2 75.718 -29.85 -30.667 1 90.48 ? C1' ANP 700 B 1 HETATM 22 N N9 ANP . . . G 2 77.037 -30.02 -29.99 1 88.79 ? N9 ANP 700 B 1 HETATM 23 C C8 ANP . . . G 2 77.265 -30.058 -28.661 1 85.1 ? C8 ANP 700 B 1 HETATM 24 N N7 ANP . . . G 2 78.591 -30.214 -28.406 1 81.94 ? N7 ANP 700 B 1 HETATM 25 C C5 ANP . . . G 2 79.251 -30.276 -29.582 1 79.14 ? C5 ANP 700 B 1 HETATM 26 C C6 ANP . . . G 2 80.665 -30.437 -30.047 1 73.36 ? C6 ANP 700 B 1 HETATM 27 N N6 ANP . . . G 2 81.706 -30.569 -29.198 1 64.81 ? N6 ANP 700 B 1 HETATM 28 N N1 ANP . . . G 2 80.907 -30.446 -31.375 1 75.54 ? N1 ANP 700 B 1 HETATM 29 C C2 ANP . . . G 2 79.907 -30.316 -32.271 1 82.83 ? C2 ANP 700 B 1 HETATM 30 N N3 ANP . . . G 2 78.608 -30.168 -31.925 1 87.2 ? N3 ANP 700 B 1 HETATM 31 C C4 ANP . . . G 2 78.215 -30.139 -30.622 1 85.29 ? C4 ANP 700 B 1 # _model_server_stats.io_time_ms 37 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 49 _model_server_stats.query_time_ms 213 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #