data_4A5M # _model_server_result.job_id SGuVpp-NKhQeCtkUE8OT1A _model_server_result.datetime_utc '2024-12-26 11:28:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4a5m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":1111}' # _entry.id 4A5M # _exptl.entry_id 4A5M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4A5M _cell.length_a 82.851 _cell.length_b 82.851 _cell.length_c 354.436 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4A5M _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 PISA dimeric 2 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,I,J,K,L,S,T 1 1 C,D,M,U,V 2 1 E,F,N,O,P,Q,R,W,X 3 1 G,H,Y,Z 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N ? 2 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 14 A CYS 14 1_555 B SG CYS 49 B CYS 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? disulf ? disulf2 A SG CYS 49 A CYS 49 1_555 B SG CYS 14 B CYS 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf3 C SG CYS 14 C CYS 14 1_555 D SG CYS 49 D CYS 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf4 C SG CYS 49 C CYS 49 1_555 D SG CYS 14 D CYS 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? disulf ? disulf5 E SG CYS 14 E CYS 14 1_555 F SG CYS 49 F CYS 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf6 E SG CYS 49 E CYS 49 1_555 F SG CYS 14 F CYS 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? disulf ? disulf7 G SG CYS 14 G CYS 14 1_555 H SG CYS 49 H CYS 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf8 G SG CYS 49 G CYS 49 1_555 H SG CYS 14 H CYS 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 4A5M _atom_sites.fract_transf_matrix[1][1] 0.01207 _atom_sites.fract_transf_matrix[1][2] 0.006969 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013937 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002821 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 EDO A 1 1110 1110 EDO EDO . J 2 EDO A 1 1111 1111 EDO EDO . K 2 EDO A 1 1112 1112 EDO EDO . L 2 EDO A 1 1113 1113 EDO EDO . M 2 EDO D 1 1111 1111 EDO EDO . N 2 EDO E 1 1110 1110 EDO EDO . O 2 EDO E 1 1111 1111 EDO EDO . P 2 EDO E 1 1112 1112 EDO EDO . Q 2 EDO E 1 1113 1113 EDO EDO . R 3 CL F 1 1111 1111 CL CL . S 4 HOH A 1 2001 2001 HOH HOH . S 4 HOH A 2 2002 2002 HOH HOH . T 4 HOH B 1 2001 2001 HOH HOH . T 4 HOH B 2 2002 2002 HOH HOH . T 4 HOH B 3 2003 2003 HOH HOH . U 4 HOH C 1 2001 2001 HOH HOH . U 4 HOH C 2 2002 2002 HOH HOH . U 4 HOH C 3 2003 2003 HOH HOH . U 4 HOH C 4 2004 2004 HOH HOH . U 4 HOH C 5 2005 2005 HOH HOH . V 4 HOH D 1 2001 2001 HOH HOH . V 4 HOH D 2 2002 2002 HOH HOH . V 4 HOH D 3 2003 2003 HOH HOH . W 4 HOH E 1 2001 2001 HOH HOH . W 4 HOH E 2 2002 2002 HOH HOH . X 4 HOH F 1 2001 2001 HOH HOH . X 4 HOH F 2 2002 2002 HOH HOH . X 4 HOH F 3 2003 2003 HOH HOH . X 4 HOH F 4 2004 2004 HOH HOH . Y 4 HOH G 1 2001 2001 HOH HOH . Z 4 HOH H 1 2001 2001 HOH HOH . Z 4 HOH H 2 2002 2002 HOH HOH . Z 4 HOH H 3 2003 2003 HOH HOH . Z 4 HOH H 4 2004 2004 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . O 2 6.307 -10.095 8.383 1 93.18 ? C1 EDO 1111 E 1 HETATM 2 O O1 EDO . . . O 2 6.615 -10.953 7.258 1 95.36 ? O1 EDO 1111 E 1 HETATM 3 C C2 EDO . . . O 2 6.411 -10.86 9.683 1 89.59 ? C2 EDO 1111 E 1 HETATM 4 O O2 EDO . . . O 2 6.91 -9.954 10.669 1 86.94 ? O2 EDO 1111 E 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #