data_4A6D # _model_server_result.job_id Bu9a87QqWhvrj2ckkPokTg _model_server_result.datetime_utc '2024-11-22 23:48:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4a6d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1350}' # _entry.id 4A6D # _exptl.entry_id 4A6D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 398.437 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYLMETHIONINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4A6D _cell.length_a 170.4 _cell.length_b 170.4 _cell.length_c 123.32 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4A6D _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 17_555 x-y+1/3,-y+2/3,-z+2/3 1 0 0 0 -1 0 0 0 -1 0 98.380486 82.213333 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 267 A GLU 267 1_555 B ZN ZN . A ZN 1348 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? metalc ? metalc2 A NE2 HIS 271 A HIS 271 1_555 B ZN ZN . A ZN 1348 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? metalc ? metalc3 B ZN ZN . A ZN 1348 1_555 J O HOH . A HOH 2041 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? # _chem_comp.formula 'C15 H22 N6 O5 S' _chem_comp.formula_weight 398.437 _chem_comp.id SAM _chem_comp.mon_nstd_flag . _chem_comp.name S-ADENOSYLMETHIONINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAM sing 290 n n N HN1 SAM sing 291 n n N HN2 SAM sing 292 n n CA C SAM sing 293 n n CA CB SAM sing 294 n n CA HA SAM sing 295 n n C O SAM doub 296 n n C OXT SAM sing 297 n n CB CG SAM sing 298 n n CB HB1 SAM sing 299 n n CB HB2 SAM sing 300 n n CG SD SAM sing 301 n n CG HG1 SAM sing 302 n n CG HG2 SAM sing 303 n n SD CE SAM sing 304 n n SD C5' SAM sing 305 n n CE HE1 SAM sing 306 n n CE HE2 SAM sing 307 n n CE HE3 SAM sing 308 n n C5' C4' SAM sing 309 n n C5' "H5'1" SAM sing 310 n n C5' "H5'2" SAM sing 311 n n C4' O4' SAM sing 312 n n C4' C3' SAM sing 313 n n C4' H4' SAM sing 314 n n O4' C1' SAM sing 315 n n C3' O3' SAM sing 316 n n C3' C2' SAM sing 317 n n C3' H3' SAM sing 318 n n O3' HO3' SAM sing 319 n n C2' O2' SAM sing 320 n n C2' C1' SAM sing 321 n n C2' H2' SAM sing 322 n n O2' HO2' SAM sing 323 n n C1' N9 SAM sing 324 n n C1' H1' SAM sing 325 n n N9 C8 SAM sing 326 n y N9 C4 SAM sing 327 n y C8 N7 SAM doub 328 n y C8 H8 SAM sing 329 n n N7 C5 SAM sing 330 n y C5 C6 SAM sing 331 n y C5 C4 SAM doub 332 n y C6 N6 SAM sing 333 n n C6 N1 SAM doub 334 n y N6 HN61 SAM sing 335 n n N6 HN62 SAM sing 336 n n N1 C2 SAM sing 337 n y C2 N3 SAM doub 338 n y C2 H2 SAM sing 339 n n N3 C4 SAM sing 340 n y # _atom_sites.entry_id 4A6D _atom_sites.fract_transf_matrix[1][1] 0.005869 _atom_sites.fract_transf_matrix[1][2] 0.003388 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006776 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008109 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 1348 1348 ZN ZN . C 2 ZN A 1 1349 1349 ZN ZN . D 3 SAM A 1 1350 1350 SAM SAM . E 4 SO4 A 1 1351 1351 SO4 SO4 . F 4 SO4 A 1 1352 1352 SO4 SO4 . G 4 SO4 A 1 1353 1353 SO4 SO4 . H 4 SO4 A 1 1354 1354 SO4 SO4 . I 5 GOL A 1 1355 1355 GOL GOL . J 6 HOH A 1 2001 2001 HOH HOH . J 6 HOH A 2 2002 2002 HOH HOH . J 6 HOH A 3 2003 2003 HOH HOH . J 6 HOH A 4 2004 2004 HOH HOH . J 6 HOH A 5 2005 2005 HOH HOH . J 6 HOH A 6 2006 2006 HOH HOH . J 6 HOH A 7 2007 2007 HOH HOH . J 6 HOH A 8 2008 2008 HOH HOH . J 6 HOH A 9 2009 2009 HOH HOH . J 6 HOH A 10 2010 2010 HOH HOH . J 6 HOH A 11 2011 2011 HOH HOH . J 6 HOH A 12 2012 2012 HOH HOH . J 6 HOH A 13 2013 2013 HOH HOH . J 6 HOH A 14 2014 2014 HOH HOH . J 6 HOH A 15 2015 2015 HOH HOH . J 6 HOH A 16 2016 2016 HOH HOH . J 6 HOH A 17 2017 2017 HOH HOH . J 6 HOH A 18 2018 2018 HOH HOH . J 6 HOH A 19 2019 2019 HOH HOH . J 6 HOH A 20 2020 2020 HOH HOH . J 6 HOH A 21 2021 2021 HOH HOH . J 6 HOH A 22 2022 2022 HOH HOH . J 6 HOH A 23 2023 2023 HOH HOH . J 6 HOH A 24 2024 2024 HOH HOH . J 6 HOH A 25 2025 2025 HOH HOH . J 6 HOH A 26 2026 2026 HOH HOH . J 6 HOH A 27 2027 2027 HOH HOH . J 6 HOH A 28 2028 2028 HOH HOH . J 6 HOH A 29 2029 2029 HOH HOH . J 6 HOH A 30 2030 2030 HOH HOH . J 6 HOH A 31 2031 2031 HOH HOH . J 6 HOH A 32 2032 2032 HOH HOH . J 6 HOH A 33 2033 2033 HOH HOH . J 6 HOH A 34 2034 2034 HOH HOH . J 6 HOH A 35 2035 2035 HOH HOH . J 6 HOH A 36 2036 2036 HOH HOH . J 6 HOH A 37 2037 2037 HOH HOH . J 6 HOH A 38 2038 2038 HOH HOH . J 6 HOH A 39 2039 2039 HOH HOH . J 6 HOH A 40 2040 2040 HOH HOH . J 6 HOH A 41 2041 2041 HOH HOH . J 6 HOH A 42 2042 2042 HOH HOH . J 6 HOH A 43 2043 2043 HOH HOH . J 6 HOH A 44 2044 2044 HOH HOH . J 6 HOH A 45 2045 2045 HOH HOH . J 6 HOH A 46 2046 2046 HOH HOH . J 6 HOH A 47 2047 2047 HOH HOH . J 6 HOH A 48 2048 2048 HOH HOH . J 6 HOH A 49 2049 2049 HOH HOH . J 6 HOH A 50 2050 2050 HOH HOH . J 6 HOH A 51 2051 2051 HOH HOH . J 6 HOH A 52 2052 2052 HOH HOH . J 6 HOH A 53 2053 2053 HOH HOH . J 6 HOH A 54 2054 2054 HOH HOH . J 6 HOH A 55 2055 2055 HOH HOH . J 6 HOH A 56 2056 2056 HOH HOH . J 6 HOH A 57 2057 2057 HOH HOH . J 6 HOH A 58 2058 2058 HOH HOH . J 6 HOH A 59 2059 2059 HOH HOH . J 6 HOH A 60 2060 2060 HOH HOH . J 6 HOH A 61 2061 2061 HOH HOH . J 6 HOH A 62 2062 2062 HOH HOH . J 6 HOH A 63 2063 2063 HOH HOH . J 6 HOH A 64 2064 2064 HOH HOH . J 6 HOH A 65 2065 2065 HOH HOH . J 6 HOH A 66 2066 2066 HOH HOH . J 6 HOH A 67 2067 2067 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAM . . . D 3 2.728 23.288 38.431 1 73.56 ? N SAM 1350 A 1 HETATM 2 C CA SAM . . . D 3 2.438 24.429 37.535 1 76.92 ? CA SAM 1350 A 1 HETATM 3 C C SAM . . . D 3 3.558 25.472 37.339 1 78.77 ? C SAM 1350 A 1 HETATM 4 O O SAM . . . D 3 4.361 25.62 38.237 1 76.97 ? O SAM 1350 A 1 HETATM 5 O OXT SAM . . . D 3 3.684 26.185 36.292 1 79.06 ? OXT SAM 1350 A 1 HETATM 6 C CB SAM . . . D 3 1.142 25.035 38.011 1 76.77 ? CB SAM 1350 A 1 HETATM 7 C CG SAM . . . D 3 1.258 25.755 39.36 1 75.9 ? CG SAM 1350 A 1 HETATM 8 S SD SAM . . . D 3 -0.359 26.528 39.726 1 77.34 ? SD SAM 1350 A 1 HETATM 9 C CE SAM . . . D 3 0.103 27.658 40.974 1 78.99 ? CE SAM 1350 A 1 HETATM 10 C C5' SAM . . . D 3 -1.158 25.34 40.854 1 75.87 ? C5' SAM 1350 A 1 HETATM 11 C C4' SAM . . . D 3 -1.815 24.291 39.945 1 75.67 ? C4' SAM 1350 A 1 HETATM 12 O O4' SAM . . . D 3 -2.525 23.439 40.826 1 75.37 ? O4' SAM 1350 A 1 HETATM 13 C C3' SAM . . . D 3 -2.867 24.92 38.952 1 77.71 ? C3' SAM 1350 A 1 HETATM 14 O O3' SAM . . . D 3 -2.646 24.47 37.605 1 80.44 ? O3' SAM 1350 A 1 HETATM 15 C C2' SAM . . . D 3 -4.227 24.466 39.577 1 77.56 ? C2' SAM 1350 A 1 HETATM 16 O O2' SAM . . . D 3 -5.335 24.28 38.696 1 77.97 ? O2' SAM 1350 A 1 HETATM 17 C C1' SAM . . . D 3 -3.813 23.136 40.232 1 76.19 ? C1' SAM 1350 A 1 HETATM 18 N N9 SAM . . . D 3 -4.747 22.709 41.295 1 76.1 ? N9 SAM 1350 A 1 HETATM 19 C C8 SAM . . . D 3 -5.26 23.504 42.317 1 75.99 ? C8 SAM 1350 A 1 HETATM 20 N N7 SAM . . . D 3 -6.041 22.798 43.079 1 76.58 ? N7 SAM 1350 A 1 HETATM 21 C C5 SAM . . . D 3 -6.138 21.508 42.569 1 76.67 ? C5 SAM 1350 A 1 HETATM 22 C C6 SAM . . . D 3 -6.824 20.329 42.917 1 76.4 ? C6 SAM 1350 A 1 HETATM 23 N N6 SAM . . . D 3 -7.571 20.317 44.047 1 76.57 ? N6 SAM 1350 A 1 HETATM 24 N N1 SAM . . . D 3 -6.636 19.185 42.167 1 76.44 ? N1 SAM 1350 A 1 HETATM 25 C C2 SAM . . . D 3 -5.898 19.193 41.048 1 76.17 ? C2 SAM 1350 A 1 HETATM 26 N N3 SAM . . . D 3 -5.244 20.307 40.687 1 76.08 ? N3 SAM 1350 A 1 HETATM 27 C C4 SAM . . . D 3 -5.281 21.437 41.421 1 76.49 ? C4 SAM 1350 A 1 # _model_server_stats.io_time_ms 52 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 27 #